Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0009927

Physical Location & Seq

Genomic Coordinates Reverse (-)

34859483 .. 34861489

Gene Structure 2007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1286900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGCGTCGGAAGCAAGCATAACACCGAAGCTGTCGCTGTTCTCGCTTCCTTCCCAGCGGCCGGAGCCGCCGGGGATTTTAACACCACCGCTCCAAACCACCGCCTCGGTTCCATTCAAGTGGGAGGAAGCTCCAGGAAAGCCGAGGGACTGCGGCGGCAGCGCAGAATCCAAACCCAAGTGCGCGAGATCCTTGGAGTTGCCTCCGAGGTTGCTGAGCGAAGCGGCCAAAATTACCAACACGCCCTCCCCGACCACCGTGTTGGACGGGCCTGACGTCGGGCGGACTATGTCGTTTTCGTTCACAGATGGGAGCCCTGATGCTTTTGGGAGTAAGAGGTTGAGCAAGGAGAGTTGTAGGAGCGTCGGCGGTGGCGGTTTTGGGTCTATGAGGTGGGCAAGTTTCAGGAAGAACAAGGAGGTTGTTGACCACGGCGGTTTTGACTCTTTGCCTCCGGCTAGTGGTGGCGGTGAAACGAAGGTGAAGGTCACAAGAGTTCGGAGGAGAGCTAGCTTCTTGAATGCTTCCAACACAAGGTCAAGTATGTGGGCAAGCATTTACAAAAGCCTTAAGCAGGTGGTCCCCGTTCCATGGAGACGCAGGCAAGAAAAACTTAGAAATATGGCCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

211

Amino Acids

22.71

Weight (kDa)

10.31

Isoelectric Point (pI)

65.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27810 AT5G53030 AT5G53030
fragaria_vesca	FvH4_7g31360
malus_domestica	MD01G1217700.v1.1 MD07G1286900.v1.1
prunus_persica	Prupe.2G309000_v2.0.a1 Prupe.6G127900_v2.0.a1
pyrus_communis	pycom01g22780 pycom07g26020
rosa_chinensis	RchiOBHm_Chr1g0380431
rosa_laevigata	RLG00000026301
rosa_multiflora	Rmu_sc0005371.1_g000009 Rmu_sc0005371.1_g000010
rosa_roxburghii	Rroxscaffold_4G00279380
rosa_rugosa	Rorug01G0421100
rosa_samantha	Rh1AG445400 Rh1BG400700 Rh1CG415100 Rh1DG430800
rosa_wichuraiana	Rw1G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	565
AatII	GACGTC	1 cut(s)	279
Acc36I	ACCTGC	1 cut(s)	565
AccBSI	CCGCTC	1 cut(s)	91
AccII	CGCG	1 cut(s)	185
AclWI	GGATC	1 cut(s)	183
AcoI	YGGCCR	2 cut(s)	59, 225
AcyI	GRCGYC	2 cut(s)	5, 276
AfiI	CCNNNNNNNGG	6 cut(s)	61, 278, 461, 534, 574, 591
AflII	CTTAAG	1 cut(s)	569
AgsI	TTSAA	2 cut(s)	118, 520
AjnI	CCWGG	1 cut(s)	133
AluBI	AGCT	4 cut(s)	31, 131, 509, 513
AluI	AGCT	4 cut(s)	31, 131, 509, 513
Alw26I	GTCTC	1 cut(s)	589
AlwI	GGATC	1 cut(s)	183
AoxI	GGCC	4 cut(s)	59, 225, 269, 624
ApeKI	GCWGC	1 cut(s)	159
AspLEI	GCGC	2 cut(s)	164, 185
AspS9I	GGNCC	2 cut(s)	269, 580
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	2 cut(s)	482, 493
AsuNHI	GCTAGC	1 cut(s)	509
AvaII	GGWCC	1 cut(s)	580
BanII	GRGCYC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	171
BccI	CCATC	1 cut(s)	302
BceAI	ACGGC	1 cut(s)	448
BciT130I	CCWGG	1 cut(s)	135
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	589
BfaI	CTAG	2 cut(s)	459, 510
BfrI	CTTAAG	1 cut(s)	569
BfuAI	ACCTGC	1 cut(s)	565
BisI	GCNGC	6 cut(s)	59, 68, 154, 157, 160, 225
BlpI	GCTNAGC	1 cut(s)	215
BlsI	GCNGC	6 cut(s)	60, 69, 155, 158, 161, 226
Bme1390I	CCNGG	2 cut(s)	72, 135
Bme18I	GGWCC	1 cut(s)	580
BmgT120I	GGNCC	2 cut(s)	269, 580
BmiI	GGNNCC	4 cut(s)	66, 111, 314, 582
BmrFI	CCNGG	2 cut(s)	72, 135
BmsI	GCATC	1 cut(s)	310
BmtI	GCTAGC	1 cut(s)	513
BpmI	CTGGAG	1 cut(s)	117
Bpu1102I	GCTNAGC	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	72
BsaHI	GRCGYC	2 cut(s)	5, 276
BsaJI	CCNNGG	7 cut(s)	71, 105, 143, 192, 206, 430, 590
BsaXI	ACNNNNNCTCC	4 cut(s)	75, 105, 230, 260
Bsc4I	CCNNNNNNNGG	6 cut(s)	61, 278, 461, 534, 574, 591
BseBI	CCWGG	1 cut(s)	135
BseDI	CCNNGG	7 cut(s)	71, 105, 143, 192, 206, 430, 590
BseLI	CCNNNNNNNGG	6 cut(s)	61, 278, 461, 534, 574, 591
BseMII	CTCAG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	517
BseX3I	CGGCCG	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	171
BseYI	CCCAGC	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	185
Bsh1285I	CGRYCG	1 cut(s)	62
BshFI	GGCC	4 cut(s)	61, 227, 271, 626
BsiEI	CGRYCG	1 cut(s)	62
BsiSI	CCGG	3 cut(s)	62, 71, 455
BslFI	GGGAC	2 cut(s)	161, 566
BslI	CCNNNNNNNGG	6 cut(s)	61, 278, 461, 534, 574, 591
BsmAI	GTCTC	1 cut(s)	589
BsmBI	CGTCTC	1 cut(s)	589
BsmFI	GGGAC	2 cut(s)	161, 566
BsmI	GAATGC	1 cut(s)	526
BsnI	GGCC	4 cut(s)	61, 227, 271, 626
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	1 cut(s)	188
Bsp1720I	GCTNAGC	1 cut(s)	215
Bsp19I	CCATGG	1 cut(s)	590
BspANI	GGCC	4 cut(s)	61, 227, 271, 626
BspCNI	CTCAG	1 cut(s)	207
BspFNI	CGCG	1 cut(s)	185
BspLI	GGNNCC	4 cut(s)	66, 111, 314, 582
BspMI	ACCTGC	1 cut(s)	565
BspOI	GCTAGC	1 cut(s)	513
BspPI	GGATC	1 cut(s)	183
BspTI	CTTAAG	1 cut(s)	569
BsrBI	CCGCTC	1 cut(s)	91
BssECI	CCNNGG	7 cut(s)	71, 105, 143, 192, 206, 430, 590
BssMI	GATC	1 cut(s)	188
BssNI	GRCGYC	2 cut(s)	5, 276
BssT1I	CCWWGG	2 cut(s)	192, 590
Bst2UI	CCWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	259
BstACI	GRCGYC	2 cut(s)	5, 276
BstAFI	CTTAAG	1 cut(s)	569
BstC8I	GCNNGC	4 cut(s)	16, 511, 553, 602
BstDEI	CTNAG	2 cut(s)	215, 614
BstDSI	CCRYGG	2 cut(s)	430, 590
BstENI	CCTNNNNNAGG	1 cut(s)	572
BstFNI	CGCG	1 cut(s)	185
BstHHI	GCGC	2 cut(s)	164, 185
BstKTI	GATC	1 cut(s)	191
BstMAI	GTCTC	1 cut(s)	589
BstMBI	GATC	1 cut(s)	188
BstMCI	CGRYCG	1 cut(s)	62
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 43, 64, 67, 159
BstNI	CCWGG	1 cut(s)	135
BstSCI	CCNGG	2 cut(s)	70, 133
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	188
BstXI	CCANNNNNNTGG	2 cut(s)	120, 262
BstYI	RGATCY	1 cut(s)	188
BstZI	CGGCCG	1 cut(s)	59
BsuRI	GGCC	4 cut(s)	61, 227, 271, 626
BtgI	CCRYGG	2 cut(s)	430, 590
BveI	ACCTGC	1 cut(s)	565
Cac8I	GCNNGC	4 cut(s)	16, 511, 553, 602
CfoI	GCGC	2 cut(s)	164, 185
Cfr13I	GGNCC	2 cut(s)	269, 580
CseI	GACGC	2 cut(s)	352, 606
CviAII	CATG	1 cut(s)	591
DdeI	CTNAG	2 cut(s)	215, 614
DpnI	GATC	1 cut(s)	190
DpnII	GATC	1 cut(s)	188
EaeI	YGGCCR	2 cut(s)	59, 225
EagI	CGGCCG	1 cut(s)	59
EciI	GGCGGA	1 cut(s)	298
EclXI	CGGCCG	1 cut(s)	59
Eco130I	CCWWGG	2 cut(s)	192, 590
Eco24I	GRGCYC	1 cut(s)	317
Eco47I	GGWCC	1 cut(s)	580
Eco52I	CGGCCG	1 cut(s)	59
EcoNI	CCTNNNNNAGG	1 cut(s)	572
EcoRII	CCWGG	1 cut(s)	133
EcoT14I	CCWWGG	2 cut(s)	192, 590
EcoT38I	GRGCYC	1 cut(s)	317
ErhI	CCWWGG	2 cut(s)	192, 590
Esp3I	CGTCTC	1 cut(s)	589
FaeI	CATG	1 cut(s)	594
FaiI	YATR	6 cut(s)	20, 290, 389, 545, 592, 623
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FaqI	GGGAC	2 cut(s)	161, 566
FatI	CATG	1 cut(s)	590
Fnu4HI	GCNGC	6 cut(s)	59, 68, 154, 157, 160, 225
FriOI	GRGCYC	1 cut(s)	317
Fsp4HI	GCNGC	6 cut(s)	59, 68, 154, 157, 160, 225
FspBI	CTAG	2 cut(s)	459, 510
GlaI	GCGC	2 cut(s)	163, 184
GluI	GCNGC	6 cut(s)	59, 68, 154, 157, 160, 225
GsaI	CCCAGC	1 cut(s)	58
GsuI	CTGGAG	1 cut(s)	117
HaeIII	GGCC	4 cut(s)	61, 227, 271, 626
HapII	CCGG	3 cut(s)	62, 71, 455
HgaI	GACGC	2 cut(s)	352, 606
HhaI	GCGC	2 cut(s)	164, 185
Hin1I	GRCGYC	2 cut(s)	5, 276
Hin1II	CATG	1 cut(s)	594
Hin6I	GCGC	2 cut(s)	162, 183
HinP1I	GCGC	2 cut(s)	162, 183
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HinfI	GANTC	2 cut(s)	167, 443
HpaII	CCGG	3 cut(s)	62, 71, 455
HphI	GGTGA	2 cut(s)	482, 493
Hpy166II	GTNNAC	2 cut(s)	303, 427
Hpy188I	TCNGA	3 cut(s)	10, 207, 501
Hpy188III	TCNNGA	2 cut(s)	406, 517
Hpy8I	GTNNAC	2 cut(s)	303, 427
Hpy99I	CGWCG	3 cut(s)	10, 281, 368
HpyAV	CCTTC	3 cut(s)	60, 472, 478
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	276
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 43, 64, 67, 159
HpyF3I	CTNAG	2 cut(s)	215, 614
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	2 cut(s)	5, 276
Hsp92II	CATG	1 cut(s)	594
HspAI	GCGC	2 cut(s)	162, 183
Kzo9I	GATC	1 cut(s)	188
LmnI	GCTCC	5 cut(s)	64, 96, 136, 312, 360
Lsp1109I	GCAGC	1 cut(s)	171
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	2 cut(s)	459, 510
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	1 cut(s)	487
MalI	GATC	1 cut(s)	190
MbiI	CCGCTC	1 cut(s)	91
MboI	GATC	1 cut(s)	188
MboII	GAAGA	1 cut(s)	421
MflI	RGATCY	1 cut(s)	188
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	1 cut(s)	231
MlyI	GAGTC	1 cut(s)	437
MmeI	TCCRAC	2 cut(s)	243, 552
MseI	TTAA	2 cut(s)	80, 570
MslI	CAYNNNNRTG	1 cut(s)	118
MspA1I	CMGCKG	1 cut(s)	58
MspCI	CTTAAG	1 cut(s)	569
MspI	CCGG	3 cut(s)	62, 71, 455
MspR9I	CCNGG	2 cut(s)	72, 135
Mva1269I	GAATGC	1 cut(s)	526
MvaI	CCWGG	1 cut(s)	135
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	5 cut(s)	11, 43, 64, 67, 159
NciI	CCSGG	1 cut(s)	72
NcoI	CCATGG	1 cut(s)	590
NdeII	GATC	1 cut(s)	188
NheI	GCTAGC	1 cut(s)	509
NlaIII	CATG	1 cut(s)	594
NlaIV	GGNNCC	4 cut(s)	66, 111, 314, 582
NmeAIII	GCCGAG	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	487
PaqCI	CACCTGC	1 cut(s)	565
PcsI	WCGNNNNNNNCGW	2 cut(s)	248, 273
PctI	GAATGC	1 cut(s)	526
PfeI	GAWTC	1 cut(s)	167
PflFI	GACNNNGTC	1 cut(s)	289
PfoI	TCCNGGA	1 cut(s)	133
PkrI	GCNGC	6 cut(s)	60, 69, 155, 158, 161, 226
PleI	GAGTC	1 cut(s)	437
PpsI	GAGTC	1 cut(s)	437
Psp6I	CCWGG	1 cut(s)	133
PspFI	CCCAGC	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	133
PspN4I	GGNNCC	4 cut(s)	66, 111, 314, 582
PspPI	GGNCC	2 cut(s)	269, 580
PsuI	RGATCY	1 cut(s)	188
PsyI	GACNNNGTC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	118
SaqAI	TTAA	2 cut(s)	80, 570
SatI	GCNGC	6 cut(s)	59, 68, 154, 157, 160, 225
Sau3AI	GATC	1 cut(s)	188
Sau96I	GGNCC	2 cut(s)	269, 580
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	2 cut(s)	72, 135
SduI	GDGCHC	1 cut(s)	317
SfaNI	GCATC	1 cut(s)	310
SinI	GGWCC	1 cut(s)	580
SmiMI	CAYNNNNRTG	1 cut(s)	118
SmlI	CTYRAG	1 cut(s)	569
SmoI	CTYRAG	1 cut(s)	569
Sse9I	AATT	1 cut(s)	231
SspMI	CTAG	2 cut(s)	459, 510
StyD4I	CCNGG	2 cut(s)	70, 133
StyI	CCWWGG	2 cut(s)	192, 590
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	1 cut(s)	279
TasI	AATT	1 cut(s)	231
TauI	GCSGC	5 cut(s)	61, 70, 156, 159, 227
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	2 cut(s)	80, 570
Tru9I	TTAA	2 cut(s)	80, 570
TseFI	GTSAC	1 cut(s)	487
TseI	GCWGC	1 cut(s)	159
Tsp45I	GTSAC	1 cut(s)	487
Tth111I	GACNNNGTC	1 cut(s)	289
Vha464I	CTTAAG	1 cut(s)	569
VpaK11BI	GGWCC	1 cut(s)	580
XagI	CCTNNNNNAGG	1 cut(s)	572
XspI	CTAG	2 cut(s)	459, 510
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.