Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0009927

Physical Location & Seq

Genomic Coordinates Forward (+)

1990529 .. 1992500

Gene Structure 1972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026301

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGAGAAGGAGTCTGAGGCAGTGAACGAAGCAAGCCCCATAAGGAAGCTGGCTCTGTTCTCACTTCCGAGCCAGCCACCCGAGCCTCCAGGGATGCTGACGCCGCCGCTGCTGACGTCAGTCTCGGTTCCTTTCCAGTGGGAGGAGGCGCCGGGAAAGCCCCGACACTTCTGCGGCGGAGAAGGCGGCGGAGGAACAGAGACCAAGGCCAAGTGCGCGAGATCCTTGGAGCTGCCTCCGAGATTGTTGGTGAGTGAGGCTAAAGTTACCAACATGCCTTCCCCGACGACTGTGCTGGATGGGCCTGAGGTGGGCCGGACTCTGTCGTTTTCGTATGCATTGAGGAGCCCGAGCAAGGAGGTTAAGGGCGGCAGCGGCGGCGGCGGGGGGTTTGGGTCTATGAGGTGGGCCAGGTTTCGGAAGAACAAGGAGGCCGGTGAGGGCAATTTCGACTTTTCGCCTACCGACAGCGGCGGTGATCGGACAAAGGTGAAGATCACAAGGGTTAGGAGTAAGGCTAGCTTCTTCAATGGTGCTCATCACTCAAGGTCACACATGTGGGCCAGCATCTGTGAAAGCTTAAAGCAGGTGGTTCCATGGAGACGCAGACAGGAAAAACTGAGAAAATCTGCTACTGTTGGATATGAACCTCAAAATCCAATTCCCACTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

225

Amino Acids

24.32

Weight (kDa)

9.83

Isoelectric Point (pI)

59.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27810 AT5G53030 AT5G53030
fragaria_vesca	FvH4_7g31360
malus_domestica	MD01G1217700.v1.1 MD07G1286900.v1.1
prunus_persica	Prupe.2G309000_v2.0.a1 Prupe.6G127900_v2.0.a1
pyrus_communis	pycom01g22780 pycom07g26020
rosa_chinensis	RchiOBHm_Chr1g0380431
rosa_laevigata	RLG00000026301
rosa_multiflora	Rmu_sc0005371.1_g000009 Rmu_sc0005371.1_g000010
rosa_roxburghii	Rroxscaffold_4G00279380
rosa_rugosa	Rorug01G0421100
rosa_samantha	Rh1AG445400 Rh1BG400700 Rh1CG415100 Rh1DG430800
rosa_wichuraiana	Rw1G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	577
AatII	GACGTC	1 cut(s)	119
Acc36I	ACCTGC	1 cut(s)	577
AccB1I	GGYRCC	1 cut(s)	148
AccII	CGCG	1 cut(s)	218
AclWI	GGATC	1 cut(s)	216
AcyI	GRCGYC	3 cut(s)	101, 116, 149
AfiI	CCNNNNNNNGG	4 cut(s)	142, 311, 355, 417
AflIII	ACRYGT	1 cut(s)	555
AgsI	TTSAA	1 cut(s)	529
AhlI	ACTAGT	1 cut(s)	668
AjnI	CCWGG	2 cut(s)	88, 410
AleI	CACNNNNGTG	1 cut(s)	556
AluBI	AGCT	4 cut(s)	49, 232, 522, 579
AluI	AGCT	4 cut(s)	49, 232, 522, 579
Alw21I	GWGCWC	1 cut(s)	538
Alw26I	GTCTC	3 cut(s)	127, 194, 595
AlwI	GGATC	1 cut(s)	216
AlwNI	CAGNNNCTG	1 cut(s)	570
Ama87I	CYCGRG	2 cut(s)	80, 349
AoxI	GGCC	6 cut(s)	207, 302, 313, 408, 432, 561
ApeKI	GCWGC	3 cut(s)	109, 232, 372
AspLEI	GCGC	2 cut(s)	151, 218
AspS9I	GGNCC	4 cut(s)	302, 313, 408, 561
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	4 cut(s)	262, 449, 488, 502
AsuNHI	GCTAGC	1 cut(s)	518
AvaI	CYCGRG	2 cut(s)	80, 349
AxyI	CCTNAGG	1 cut(s)	306
BanI	GGYRCC	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	538
BbvI	GCAGC	3 cut(s)	96, 219, 384
BccI	CCATC	1 cut(s)	293
BcgI	CGANNNNNNTGC	4 cut(s)	153, 187, 274, 308
BciT130I	CCWGG	2 cut(s)	90, 412
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	3 cut(s)	127, 194, 595
BcuI	ACTAGT	1 cut(s)	668
BfaI	CTAG	2 cut(s)	519, 669
BfoI	RGCGCY	1 cut(s)	152
BfuAI	ACCTGC	1 cut(s)	577
Bme1390I	CCNGG	3 cut(s)	90, 153, 412
BmeT110I	CYCGRG	2 cut(s)	80, 349
BmgT120I	GGNCC	4 cut(s)	302, 313, 408, 561
BmiI	GGNNCC	4 cut(s)	129, 150, 347, 594
BmrFI	CCNGG	3 cut(s)	90, 153, 412
BmsI	GCATC	2 cut(s)	84, 576
BmtI	GCTAGC	1 cut(s)	522
BoxI	GACNNNNGTC	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	529
BpuMI	CCSGG	1 cut(s)	153
BsaHI	GRCGYC	3 cut(s)	101, 116, 149
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	4 cut(s)	89, 204, 225, 596
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	4 cut(s)	142, 311, 355, 417
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	1 cut(s)	136
Bse21I	CCTNAGG	1 cut(s)	306
BseBI	CCWGG	2 cut(s)	90, 412
BseDI	CCNNGG	4 cut(s)	89, 204, 225, 596
BseGI	GGATG	2 cut(s)	99, 304
BseLI	CCNNNNNNNGG	4 cut(s)	142, 311, 355, 417
BseMII	CTCAG	3 cut(s)	6, 297, 611
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	2 cut(s)	158, 358
BseXI	GCAGC	3 cut(s)	96, 219, 384
Bsh1236I	CGCG	1 cut(s)	218
BshFI	GGCC	6 cut(s)	209, 304, 315, 410, 434, 563
BshNI	GGYRCC	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	538
BsiHKCI	CYCGRG	2 cut(s)	80, 349
BsiSI	CCGG	3 cut(s)	152, 316, 435
BslI	CCNNNNNNNGG	4 cut(s)	142, 311, 355, 417
BsmAI	GTCTC	3 cut(s)	127, 194, 595
BsmBI	CGTCTC	1 cut(s)	595
BsnI	GGCC	6 cut(s)	209, 304, 315, 410, 434, 563
Bso31I	GGTCTC	1 cut(s)	194
BsoBI	CYCGRG	2 cut(s)	80, 349
Bsp1286I	GDGCHC	2 cut(s)	350, 538
Bsp143I	GATC	3 cut(s)	221, 478, 495
Bsp19I	CCATGG	1 cut(s)	596
BspANI	GGCC	6 cut(s)	209, 304, 315, 410, 434, 563
BspCNI	CTCAG	3 cut(s)	7, 298, 612
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	4 cut(s)	129, 150, 347, 594
BspMI	ACCTGC	1 cut(s)	577
BspOI	GCTAGC	1 cut(s)	522
BspPI	GGATC	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	136
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	4 cut(s)	89, 204, 225, 596
BssMI	GATC	3 cut(s)	221, 478, 495
BssNI	GRCGYC	3 cut(s)	101, 116, 149
BssT1I	CCWWGG	3 cut(s)	204, 225, 596
Bst2UI	CCWGG	2 cut(s)	90, 412
Bst4CI	ACNGT	2 cut(s)	292, 637
BstACI	GRCGYC	3 cut(s)	101, 116, 149
BstC8I	GCNNGC	5 cut(s)	34, 51, 74, 520, 565
BstDEI	CTNAG	3 cut(s)	15, 306, 620
BstDSI	CCRYGG	1 cut(s)	596
BstF5I	GGATG	2 cut(s)	99, 304
BstFNI	CGCG	1 cut(s)	218
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	2 cut(s)	151, 218
BstKTI	GATC	3 cut(s)	224, 481, 498
BstMAI	GTCTC	3 cut(s)	127, 194, 595
BstMBI	GATC	3 cut(s)	221, 478, 495
BstNI	CCWGG	2 cut(s)	90, 412
BstNSI	RCATGY	2 cut(s)	277, 559
BstPAI	GACNNNNGTC	1 cut(s)	119
BstSCI	CCNGG	3 cut(s)	88, 151, 410
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	3 cut(s)	96, 219, 384
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
Bsu36I	CCTNAGG	1 cut(s)	306
BsuRI	GGCC	6 cut(s)	209, 304, 315, 410, 434, 563
BtgI	CCRYGG	1 cut(s)	596
BtsCI	GGATG	2 cut(s)	99, 304
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	27, 143
BveI	ACCTGC	1 cut(s)	577
Cac8I	GCNNGC	5 cut(s)	34, 51, 74, 520, 565
CaiI	CAGNNNCTG	1 cut(s)	570
CfoI	GCGC	2 cut(s)	151, 218
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	4 cut(s)	302, 313, 408, 561
CseI	GACGC	2 cut(s)	109, 612
CviAII	CATG	3 cut(s)	274, 556, 597
DdeI	CTNAG	3 cut(s)	15, 306, 620
DinI	GGCGCC	1 cut(s)	150
DpnI	GATC	3 cut(s)	223, 480, 497
DpnII	GATC	3 cut(s)	221, 478, 495
EciI	GGCGGA	2 cut(s)	192, 204
Eco130I	CCWWGG	3 cut(s)	204, 225, 596
Eco24I	GRGCYC	1 cut(s)	350
Eco31I	GGTCTC	1 cut(s)	194
Eco81I	CCTNAGG	1 cut(s)	306
Eco88I	CYCGRG	2 cut(s)	80, 349
EcoRII	CCWGG	2 cut(s)	88, 410
EcoT14I	CCWWGG	3 cut(s)	204, 225, 596
EcoT22I	ATGCAT	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	350
EgeI	GGCGCC	1 cut(s)	150
EheI	GGCGCC	1 cut(s)	150
ErhI	CCWWGG	3 cut(s)	204, 225, 596
Esp3I	CGTCTC	1 cut(s)	595
FaeI	CATG	3 cut(s)	277, 559, 600
FaiI	YATR	7 cut(s)	41, 275, 336, 401, 557, 598, 645
FalI	AAGNNNNNCTT	2 cut(s)	506, 538
FatI	CATG	3 cut(s)	273, 555, 596
FauI	CCCGC	1 cut(s)	377
FokI	GGATG	2 cut(s)	106, 311
FriOI	GRGCYC	1 cut(s)	350
FspBI	CTAG	2 cut(s)	519, 669
GlaI	GCGC	2 cut(s)	150, 217
GsuI	CTGGAG	1 cut(s)	72
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	6 cut(s)	209, 304, 315, 410, 434, 563
HapII	CCGG	3 cut(s)	152, 316, 435
HgaI	GACGC	2 cut(s)	109, 612
HhaI	GCGC	2 cut(s)	151, 218
Hin1I	GRCGYC	3 cut(s)	101, 116, 149
Hin1II	CATG	3 cut(s)	277, 559, 600
Hin6I	GCGC	2 cut(s)	149, 216
HinP1I	GCGC	2 cut(s)	149, 216
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	2 cut(s)	11, 319
HpaII	CCGG	3 cut(s)	152, 316, 435
HphI	GGTGA	4 cut(s)	262, 449, 488, 502
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	5 cut(s)	16, 69, 240, 420, 483
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	289
HpyAV	CCTTC	2 cut(s)	176, 288
HpyCH4III	ACNGT	2 cut(s)	292, 637
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	1 cut(s)	338
HpyF3I	CTNAG	3 cut(s)	15, 306, 620
HpySE526I	ACGT	1 cut(s)	116
Hsp92I	GRCGYC	3 cut(s)	101, 116, 149
Hsp92II	CATG	3 cut(s)	277, 559, 600
HspAI	GCGC	2 cut(s)	149, 216
KasI	GGCGCC	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	221, 478, 495
LmnI	GCTCC	2 cut(s)	229, 345
Lsp1109I	GCAGC	3 cut(s)	96, 219, 384
LweI	GCATC	2 cut(s)	84, 576
MaeI	CTAG	2 cut(s)	519, 669
MaeII	ACGT	1 cut(s)	116
MaeIII	GTNAC	2 cut(s)	265, 549
MalI	GATC	3 cut(s)	223, 480, 497
MboI	GATC	3 cut(s)	221, 478, 495
MboII	GAAGA	3 cut(s)	433, 505, 517
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	2 cut(s)	350, 538
MluCI	AATT	2 cut(s)	445, 660
Mly113I	GGCGCC	1 cut(s)	149
MlyI	GAGTC	2 cut(s)	20, 313
MmeI	TCCRAC	1 cut(s)	619
Mph1103I	ATGCAT	1 cut(s)	340
MseI	TTAA	3 cut(s)	363, 581, 673
MslI	CAYNNNNRTG	1 cut(s)	556
MspA1I	CMGCKG	3 cut(s)	109, 375, 471
MspI	CCGG	3 cut(s)	152, 316, 435
MspR9I	CCNGG	3 cut(s)	90, 153, 412
MvaI	CCWGG	2 cut(s)	90, 412
MvnI	CGCG	1 cut(s)	218
NarI	GGCGCC	1 cut(s)	149
NciI	CCSGG	1 cut(s)	153
NcoI	CCATGG	1 cut(s)	596
NdeII	GATC	3 cut(s)	221, 478, 495
NheI	GCTAGC	1 cut(s)	518
NlaIII	CATG	3 cut(s)	277, 559, 600
NlaIV	GGNNCC	4 cut(s)	129, 150, 347, 594
NmuCI	GTSAC	1 cut(s)	549
NsiI	ATGCAT	1 cut(s)	340
NspI	RCATGY	2 cut(s)	277, 559
OliI	CACNNNNGTG	1 cut(s)	556
PaqCI	CACCTGC	1 cut(s)	577
PciI	ACATGT	1 cut(s)	555
PflFI	GACNNNGTC	1 cut(s)	322
PleI	GAGTC	2 cut(s)	19, 313
PluTI	GGCGCC	1 cut(s)	152
PpsI	GAGTC	2 cut(s)	19, 313
PscI	ACATGT	1 cut(s)	555
PshAI	GACNNNNGTC	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	88, 410
PspGI	CCWGG	2 cut(s)	88, 410
PspN4I	GGNNCC	4 cut(s)	129, 150, 347, 594
PspPI	GGNCC	4 cut(s)	302, 313, 408, 561
PstNI	CAGNNNCTG	1 cut(s)	570
PsuI	RGATCY	1 cut(s)	221
PsyI	GACNNNGTC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	556
SaqAI	TTAA	3 cut(s)	363, 581, 673
Sau3AI	GATC	3 cut(s)	221, 478, 495
Sau96I	GGNCC	4 cut(s)	302, 313, 408, 561
SchI	GAGTC	2 cut(s)	20, 313
ScrFI	CCNGG	3 cut(s)	90, 153, 412
SduI	GDGCHC	2 cut(s)	350, 538
SfaNI	GCATC	2 cut(s)	84, 576
SfoI	GGCGCC	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	556
SmlI	CTYRAG	1 cut(s)	544
SmoI	CTYRAG	1 cut(s)	544
SpeI	ACTAGT	1 cut(s)	668
Sse9I	AATT	2 cut(s)	445, 660
SspDI	GGCGCC	1 cut(s)	148
SspMI	CTAG	2 cut(s)	519, 669
StyD4I	CCNGG	3 cut(s)	88, 151, 410
StyI	CCWWGG	3 cut(s)	204, 225, 596
TaaI	ACNGT	2 cut(s)	292, 637
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	1 cut(s)	450
TasI	AATT	2 cut(s)	445, 660
TauI	GCSGC	9 cut(s)	106, 109, 177, 189, 372, 378, 381, 384, 474
Tru1I	TTAA	3 cut(s)	363, 581, 673
Tru9I	TTAA	3 cut(s)	363, 581, 673
TscAI	CASTG	2 cut(s)	27, 143
TseFI	GTSAC	1 cut(s)	549
TseI	GCWGC	3 cut(s)	109, 232, 372
Tsp45I	GTSAC	1 cut(s)	549
TspDTI	ATGAA	1 cut(s)	660
TspRI	CASTG	2 cut(s)	27, 143
Tth111I	GACNNNGTC	1 cut(s)	322
XceI	RCATGY	2 cut(s)	277, 559
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XspI	CTAG	2 cut(s)	519, 669
ZraI	GACGTC	1 cut(s)	117
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.