Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0009927

Physical Location & Seq

Genomic Coordinates Reverse (-)

66552042 .. 66553485

Gene Structure 1444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG445400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGAGAAGGAGTCTGAGGCAGTGAACGAAGCAAGCCCCATAAGGAAGCTGGCTCTGTTCTCACTTCCGAGCCAGCCACCCGAGCCTCCAGGGATGCTGACGCCGCCGCTGCTGACGTCAGTCTCGGTTCCTTTCCAGTGGGAGGAGGCGCCAGGAAAGCCCCGACACTTCGGCGGCGGAGGAACAGAGACCAAGGCCAAGTGCGCGAGATCCTTGGAGCTGCCTCCGAGGTTGTTGGTGAGTGAGGCTAAAGTTACCAACATGCCTTCCCCGACGACTGTGCTGGATGGGCCTGAGGTGGGCCGGACTCTGTCGTTTTCGTATGCATTGAGGAGCCCGAGCAAGGAGGTTAAGGGCGGCGGCGGCGGCGGGGGGTTTGGGTCTATGAGGTGGGCCAGGTTTCTGAAGAACAAGGAGGCCGGTGAGGGCAATTTCGACTTTTCGCCTACCGACAGCGGCGGTGATCGGACAAAGGTGAAGATCACAAGGGTTAGGAGTAAGGCTAGCTTCTTCAATGGTGCTCATCACTCAAGGTCACACATGTGGGCCAGCATCTATGAAAGCTTAAAGCAGGTGGTTCCATGGAAACGCAGACAGGAAAAACTGAGAAAATCTGCTACTGTTGGATATGAACCTCAAAATCCAATTCCCACTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

219

Amino Acids

23.89

Weight (kDa)

9.84

Isoelectric Point (pI)

59.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27810 AT5G53030 AT5G53030
fragaria_vesca	FvH4_7g31360
malus_domestica	MD01G1217700.v1.1 MD07G1286900.v1.1
prunus_persica	Prupe.2G309000_v2.0.a1 Prupe.6G127900_v2.0.a1
pyrus_communis	pycom01g22780 pycom07g26020
rosa_chinensis	RchiOBHm_Chr1g0380431
rosa_laevigata	RLG00000026301
rosa_multiflora	Rmu_sc0005371.1_g000009 Rmu_sc0005371.1_g000010
rosa_roxburghii	Rroxscaffold_4G00279380
rosa_rugosa	Rorug01G0421100
rosa_samantha	Rh1AG445400 Rh1BG400700 Rh1CG415100 Rh1DG430800
rosa_wichuraiana	Rw1G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	562
AatII	GACGTC	1 cut(s)	119
Acc36I	ACCTGC	1 cut(s)	562
AccB1I	GGYRCC	1 cut(s)	148
AccII	CGCG	1 cut(s)	206
AclWI	GGATC	1 cut(s)	204
AcuI	CTGAAG	1 cut(s)	425
AcyI	GRCGYC	3 cut(s)	101, 116, 149
AfiI	CCNNNNNNNGG	3 cut(s)	142, 299, 343
AflIII	ACRYGT	1 cut(s)	540
AgsI	TTSAA	1 cut(s)	514
AjnI	CCWGG	3 cut(s)	88, 151, 395
AleI	CACNNNNGTG	1 cut(s)	541
AluBI	AGCT	4 cut(s)	49, 220, 507, 564
AluI	AGCT	4 cut(s)	49, 220, 507, 564
Alw21I	GWGCWC	1 cut(s)	523
Alw26I	GTCTC	2 cut(s)	127, 182
AlwI	GGATC	1 cut(s)	204
Ama87I	CYCGRG	2 cut(s)	80, 337
AoxI	GGCC	6 cut(s)	195, 290, 301, 393, 417, 546
ApeKI	GCWGC	2 cut(s)	109, 220
AspLEI	GCGC	2 cut(s)	151, 206
AspS9I	GGNCC	4 cut(s)	290, 301, 393, 546
AsuHPI	GGTGA	4 cut(s)	250, 434, 473, 487
AsuNHI	GCTAGC	1 cut(s)	503
AvaI	CYCGRG	2 cut(s)	80, 337
AxyI	CCTNAGG	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	523
BbvI	GCAGC	2 cut(s)	96, 207
BccI	CCATC	1 cut(s)	281
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BciT130I	CCWGG	3 cut(s)	90, 153, 397
BcoDI	GTCTC	2 cut(s)	127, 182
BfaI	CTAG	1 cut(s)	504
BfoI	RGCGCY	1 cut(s)	152
BfuAI	ACCTGC	1 cut(s)	562
Bme1390I	CCNGG	3 cut(s)	90, 153, 397
BmeT110I	CYCGRG	2 cut(s)	80, 337
BmgT120I	GGNCC	4 cut(s)	290, 301, 393, 546
BmiI	GGNNCC	4 cut(s)	129, 150, 335, 579
BmrFI	CCNGG	3 cut(s)	90, 153, 397
BmsI	GCATC	2 cut(s)	84, 561
BmtI	GCTAGC	1 cut(s)	507
BoxI	GACNNNNGTC	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	514
BsaHI	GRCGYC	3 cut(s)	101, 116, 149
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	5 cut(s)	89, 192, 213, 227, 581
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 299, 343
Bse118I	RCCGGY	1 cut(s)	419
Bse1I	ACTGG	1 cut(s)	136
Bse21I	CCTNAGG	1 cut(s)	294
BseBI	CCWGG	3 cut(s)	90, 153, 397
BseDI	CCNNGG	5 cut(s)	89, 192, 213, 227, 581
BseGI	GGATG	2 cut(s)	99, 292
BseLI	CCNNNNNNNGG	3 cut(s)	142, 299, 343
BseMII	CTCAG	3 cut(s)	6, 285, 596
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	2 cut(s)	158, 346
BseXI	GCAGC	2 cut(s)	96, 207
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	6 cut(s)	197, 292, 303, 395, 419, 548
BshNI	GGYRCC	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	523
BsiHKCI	CYCGRG	2 cut(s)	80, 337
BsiSI	CCGG	2 cut(s)	304, 420
BslI	CCNNNNNNNGG	3 cut(s)	142, 299, 343
BsmAI	GTCTC	2 cut(s)	127, 182
BsnI	GGCC	6 cut(s)	197, 292, 303, 395, 419, 548
Bso31I	GGTCTC	1 cut(s)	182
BsoBI	CYCGRG	2 cut(s)	80, 337
Bsp1286I	GDGCHC	2 cut(s)	338, 523
Bsp143I	GATC	3 cut(s)	209, 463, 480
Bsp19I	CCATGG	1 cut(s)	581
BspANI	GGCC	6 cut(s)	197, 292, 303, 395, 419, 548
BspCNI	CTCAG	3 cut(s)	7, 286, 597
BspFNI	CGCG	1 cut(s)	206
BspLI	GGNNCC	4 cut(s)	129, 150, 335, 579
BspMI	ACCTGC	1 cut(s)	562
BspOI	GCTAGC	1 cut(s)	507
BspPI	GGATC	1 cut(s)	204
BspT107I	GGYRCC	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	419
BsrI	ACTGG	1 cut(s)	136
BssAI	RCCGGY	1 cut(s)	419
BssECI	CCNNGG	5 cut(s)	89, 192, 213, 227, 581
BssMI	GATC	3 cut(s)	209, 463, 480
BssNI	GRCGYC	3 cut(s)	101, 116, 149
BssT1I	CCWWGG	3 cut(s)	192, 213, 581
Bst2UI	CCWGG	3 cut(s)	90, 153, 397
Bst4CI	ACNGT	2 cut(s)	280, 622
BstACI	GRCGYC	3 cut(s)	101, 116, 149
BstC8I	GCNNGC	5 cut(s)	34, 51, 74, 505, 550
BstDEI	CTNAG	3 cut(s)	15, 294, 605
BstDSI	CCRYGG	1 cut(s)	581
BstF5I	GGATG	2 cut(s)	99, 292
BstFNI	CGCG	1 cut(s)	206
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	2 cut(s)	151, 206
BstKTI	GATC	3 cut(s)	212, 466, 483
BstMAI	GTCTC	2 cut(s)	127, 182
BstMBI	GATC	3 cut(s)	209, 463, 480
BstMWI	GCNNNNNNNGC	8 cut(s)	82, 103, 109, 157, 203, 289, 363, 366
BstNI	CCWGG	3 cut(s)	90, 153, 397
BstNSI	RCATGY	2 cut(s)	265, 544
BstPAI	GACNNNNGTC	1 cut(s)	119
BstSCI	CCNGG	3 cut(s)	88, 151, 395
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	2 cut(s)	96, 207
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
Bsu36I	CCTNAGG	1 cut(s)	294
BsuRI	GGCC	6 cut(s)	197, 292, 303, 395, 419, 548
BtgI	CCRYGG	1 cut(s)	581
BtsCI	GGATG	2 cut(s)	99, 292
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	27, 143
BveI	ACCTGC	1 cut(s)	562
Cac8I	GCNNGC	5 cut(s)	34, 51, 74, 505, 550
CfoI	GCGC	2 cut(s)	151, 206
Cfr10I	RCCGGY	1 cut(s)	419
Cfr13I	GGNCC	4 cut(s)	290, 301, 393, 546
CseI	GACGC	1 cut(s)	109
CviAII	CATG	3 cut(s)	262, 541, 582
DdeI	CTNAG	3 cut(s)	15, 294, 605
DinI	GGCGCC	1 cut(s)	150
DpnI	GATC	3 cut(s)	211, 465, 482
DpnII	GATC	3 cut(s)	209, 463, 480
EciI	GGCGGA	1 cut(s)	192
Eco130I	CCWWGG	3 cut(s)	192, 213, 581
Eco24I	GRGCYC	1 cut(s)	338
Eco31I	GGTCTC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	425
Eco81I	CCTNAGG	1 cut(s)	294
Eco88I	CYCGRG	2 cut(s)	80, 337
EcoRII	CCWGG	3 cut(s)	88, 151, 395
EcoT14I	CCWWGG	3 cut(s)	192, 213, 581
EcoT22I	ATGCAT	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	338
EgeI	GGCGCC	1 cut(s)	150
EheI	GGCGCC	1 cut(s)	150
ErhI	CCWWGG	3 cut(s)	192, 213, 581
FaeI	CATG	3 cut(s)	265, 544, 585
FaiI	YATR	8 cut(s)	41, 263, 324, 386, 542, 558, 583, 630
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FatI	CATG	3 cut(s)	261, 540, 581
FauI	CCCGC	1 cut(s)	362
FokI	GGATG	2 cut(s)	106, 299
FriOI	GRGCYC	1 cut(s)	338
FspBI	CTAG	1 cut(s)	504
GlaI	GCGC	2 cut(s)	150, 205
GsuI	CTGGAG	1 cut(s)	72
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	6 cut(s)	197, 292, 303, 395, 419, 548
HapII	CCGG	2 cut(s)	304, 420
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	2 cut(s)	151, 206
Hin1I	GRCGYC	3 cut(s)	101, 116, 149
Hin1II	CATG	3 cut(s)	265, 544, 585
Hin6I	GCGC	2 cut(s)	149, 204
HinP1I	GCGC	2 cut(s)	149, 204
HindIII	AAGCTT	1 cut(s)	562
HinfI	GANTC	2 cut(s)	11, 307
HpaII	CCGG	2 cut(s)	304, 420
HphI	GGTGA	4 cut(s)	250, 434, 473, 487
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	5 cut(s)	16, 69, 228, 405, 468
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	277
HpyAV	CCTTC	1 cut(s)	276
HpyCH4III	ACNGT	2 cut(s)	280, 622
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	1 cut(s)	326
HpyF10VI	GCNNNNNNNGC	8 cut(s)	82, 103, 109, 157, 203, 289, 363, 366
HpyF3I	CTNAG	3 cut(s)	15, 294, 605
HpySE526I	ACGT	1 cut(s)	116
Hsp92I	GRCGYC	3 cut(s)	101, 116, 149
Hsp92II	CATG	3 cut(s)	265, 544, 585
HspAI	GCGC	2 cut(s)	149, 204
KasI	GGCGCC	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	209, 463, 480
LmnI	GCTCC	2 cut(s)	217, 333
Lsp1109I	GCAGC	2 cut(s)	96, 207
LweI	GCATC	2 cut(s)	84, 561
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	1 cut(s)	116
MaeIII	GTNAC	2 cut(s)	253, 534
MalI	GATC	3 cut(s)	211, 465, 482
MboI	GATC	3 cut(s)	209, 463, 480
MboII	GAAGA	3 cut(s)	418, 490, 502
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	2 cut(s)	338, 523
MluCI	AATT	2 cut(s)	430, 645
Mly113I	GGCGCC	1 cut(s)	149
MlyI	GAGTC	2 cut(s)	20, 301
MmeI	TCCRAC	1 cut(s)	604
Mph1103I	ATGCAT	1 cut(s)	328
MseI	TTAA	2 cut(s)	351, 566
MslI	CAYNNNNRTG	1 cut(s)	541
MspA1I	CMGCKG	2 cut(s)	109, 456
MspI	CCGG	2 cut(s)	304, 420
MspR9I	CCNGG	3 cut(s)	90, 153, 397
MvaI	CCWGG	3 cut(s)	90, 153, 397
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	8 cut(s)	82, 103, 109, 157, 203, 289, 363, 366
NarI	GGCGCC	1 cut(s)	149
NcoI	CCATGG	1 cut(s)	581
NdeII	GATC	3 cut(s)	209, 463, 480
NheI	GCTAGC	1 cut(s)	503
NlaIII	CATG	3 cut(s)	265, 544, 585
NlaIV	GGNNCC	4 cut(s)	129, 150, 335, 579
NmuCI	GTSAC	1 cut(s)	534
NsiI	ATGCAT	1 cut(s)	328
NspI	RCATGY	2 cut(s)	265, 544
OliI	CACNNNNGTG	1 cut(s)	541
PaqCI	CACCTGC	1 cut(s)	562
PciI	ACATGT	1 cut(s)	540
PflFI	GACNNNGTC	1 cut(s)	310
PleI	GAGTC	2 cut(s)	19, 301
PluTI	GGCGCC	1 cut(s)	152
PpsI	GAGTC	2 cut(s)	19, 301
PscI	ACATGT	1 cut(s)	540
PshAI	GACNNNNGTC	1 cut(s)	119
Psp6I	CCWGG	3 cut(s)	88, 151, 395
PspGI	CCWGG	3 cut(s)	88, 151, 395
PspN4I	GGNNCC	4 cut(s)	129, 150, 335, 579
PspPI	GGNCC	4 cut(s)	290, 301, 393, 546
PsuI	RGATCY	1 cut(s)	209
PsyI	GACNNNGTC	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	541
SaqAI	TTAA	2 cut(s)	351, 566
Sau3AI	GATC	3 cut(s)	209, 463, 480
Sau96I	GGNCC	4 cut(s)	290, 301, 393, 546
SchI	GAGTC	2 cut(s)	20, 301
ScrFI	CCNGG	3 cut(s)	90, 153, 397
SduI	GDGCHC	2 cut(s)	338, 523
SfaNI	GCATC	2 cut(s)	84, 561
SfoI	GGCGCC	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	541
SmlI	CTYRAG	1 cut(s)	529
SmoI	CTYRAG	1 cut(s)	529
Sse9I	AATT	2 cut(s)	430, 645
SspDI	GGCGCC	1 cut(s)	148
SspMI	CTAG	1 cut(s)	504
StyD4I	CCNGG	3 cut(s)	88, 151, 395
StyI	CCWWGG	3 cut(s)	192, 213, 581
TaaI	ACNGT	2 cut(s)	280, 622
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	1 cut(s)	435
TasI	AATT	2 cut(s)	430, 645
TauI	GCSGC	8 cut(s)	106, 109, 177, 360, 363, 366, 369, 459
Tru1I	TTAA	2 cut(s)	351, 566
Tru9I	TTAA	2 cut(s)	351, 566
TscAI	CASTG	2 cut(s)	27, 143
TseFI	GTSAC	1 cut(s)	534
TseI	GCWGC	2 cut(s)	109, 220
Tsp45I	GTSAC	1 cut(s)	534
TspDTI	ATGAA	2 cut(s)	573, 645
TspRI	CASTG	2 cut(s)	27, 143
Tth111I	GACNNNGTC	1 cut(s)	310
XceI	RCATGY	2 cut(s)	265, 544
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XspI	CTAG	1 cut(s)	504
ZraI	GACGTC	1 cut(s)	117
Zsp2I	ATGCAT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.