Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005371.1

Orthogroup ID

OG0009927

Physical Location & Seq

Genomic Coordinates Reverse (-)

37256 .. 38710

Gene Structure 1455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005371.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atggagaaggagtctgaggcagtgaacgaagcaagccccataaggaagctggctctgttctcacttccgagccagccacccgagcctccagggatgctgacgccgccgctgctgacttcagtctcggttcctttccagtgggaggaggcgccgggaaaaccccgacacttcggcggcggaggaacagagaccaaggccaagtgcgcgagatccttggagctgcctccgaggttgttggtgagtgaggctaaagttatcaacatgccttccccgacgactgtgctggatgggcctgaggtgggccggactctgtcgttttcgtatgcattgaggagcccgagcaaggaggttaagggtggcggcggcggcggcggggggtttgggtctatgaggtgggccaggtttcggaagaacaaggaggccggtgagggcaatttcgacttttcgcctaccgacagcggcggtgatcggacaaaggtgaagatcacaagggttaggagtaaggctagcttcttcaatggtgctcatcactcaaggtcacacatgtgggccagcatctgtgaaagcttaaagcaggtggttccatggagacgcagacaggaaaaactgagaaaatctgctactgttggatatgaacctcaaaatccaattcccactagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

220

Amino Acids

23.96

Weight (kDa)

10.0

Isoelectric Point (pI)

62.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27810 AT5G53030 AT5G53030
fragaria_vesca	FvH4_7g31360
malus_domestica	MD01G1217700.v1.1 MD07G1286900.v1.1
prunus_persica	Prupe.2G309000_v2.0.a1 Prupe.6G127900_v2.0.a1
pyrus_communis	pycom01g22780 pycom07g26020
rosa_chinensis	RchiOBHm_Chr1g0380431
rosa_laevigata	RLG00000026301
rosa_multiflora	Rmu_sc0005371.1_g000009 Rmu_sc0005371.1_g000010
rosa_roxburghii	Rroxscaffold_4G00279380
rosa_rugosa	Rorug01G0421100
rosa_samantha	Rh1AG445400 Rh1BG400700 Rh1CG415100 Rh1DG430800
rosa_wichuraiana	Rw1G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	565
Acc36I	ACCTGC	1 cut(s)	565
AccB1I	GGYRCC	1 cut(s)	148
AccII	CGCG	1 cut(s)	206
AclWI	GGATC	1 cut(s)	204
AcuI	CTGAAG	1 cut(s)	102
AcyI	GRCGYC	2 cut(s)	101, 149
AfiI	CCNNNNNNNGG	4 cut(s)	142, 299, 343, 405
AflIII	ACRYGT	1 cut(s)	543
AgsI	TTSAA	1 cut(s)	517
AhlI	ACTAGT	1 cut(s)	656
AjnI	CCWGG	2 cut(s)	88, 398
AleI	CACNNNNGTG	1 cut(s)	544
AluBI	AGCT	4 cut(s)	49, 220, 510, 567
AluI	AGCT	4 cut(s)	49, 220, 510, 567
Alw21I	GWGCWC	1 cut(s)	526
Alw26I	GTCTC	3 cut(s)	127, 182, 583
AlwI	GGATC	1 cut(s)	204
AlwNI	CAGNNNCTG	1 cut(s)	558
Ama87I	CYCGRG	2 cut(s)	80, 337
AoxI	GGCC	6 cut(s)	195, 290, 301, 396, 420, 549
ApeKI	GCWGC	2 cut(s)	109, 220
AspLEI	GCGC	2 cut(s)	151, 206
AspS9I	GGNCC	4 cut(s)	290, 301, 396, 549
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	4 cut(s)	250, 437, 476, 490
AsuNHI	GCTAGC	1 cut(s)	506
AvaI	CYCGRG	2 cut(s)	80, 337
AxyI	CCTNAGG	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	526
BbvI	GCAGC	2 cut(s)	96, 207
BccI	CCATC	1 cut(s)	281
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BciT130I	CCWGG	2 cut(s)	90, 400
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	3 cut(s)	127, 182, 583
BcuI	ACTAGT	1 cut(s)	656
BfaI	CTAG	2 cut(s)	507, 657
BfoI	RGCGCY	1 cut(s)	152
BfuAI	ACCTGC	1 cut(s)	565
Bme1390I	CCNGG	3 cut(s)	90, 153, 400
BmeT110I	CYCGRG	2 cut(s)	80, 337
BmgT120I	GGNCC	4 cut(s)	290, 301, 396, 549
BmiI	GGNNCC	4 cut(s)	129, 150, 335, 582
BmrFI	CCNGG	3 cut(s)	90, 153, 400
BmsI	GCATC	2 cut(s)	84, 564
BmtI	GCTAGC	1 cut(s)	510
BoxI	GACNNNNGTC	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	517
BpuMI	CCSGG	1 cut(s)	153
BsaHI	GRCGYC	2 cut(s)	101, 149
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	5 cut(s)	89, 192, 213, 227, 584
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	4 cut(s)	142, 299, 343, 405
Bse118I	RCCGGY	1 cut(s)	422
Bse1I	ACTGG	1 cut(s)	136
Bse21I	CCTNAGG	1 cut(s)	294
BseBI	CCWGG	2 cut(s)	90, 400
BseDI	CCNNGG	5 cut(s)	89, 192, 213, 227, 584
BseGI	GGATG	2 cut(s)	99, 292
BseLI	CCNNNNNNNGG	4 cut(s)	142, 299, 343, 405
BseMII	CTCAG	3 cut(s)	6, 285, 599
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	2 cut(s)	158, 346
BseXI	GCAGC	2 cut(s)	96, 207
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	6 cut(s)	197, 292, 303, 398, 422, 551
BshNI	GGYRCC	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	526
BsiHKCI	CYCGRG	2 cut(s)	80, 337
BsiSI	CCGG	3 cut(s)	152, 304, 423
BslI	CCNNNNNNNGG	4 cut(s)	142, 299, 343, 405
BsmAI	GTCTC	3 cut(s)	127, 182, 583
BsmBI	CGTCTC	1 cut(s)	583
BsnI	GGCC	6 cut(s)	197, 292, 303, 398, 422, 551
Bso31I	GGTCTC	1 cut(s)	182
BsoBI	CYCGRG	2 cut(s)	80, 337
Bsp1286I	GDGCHC	2 cut(s)	338, 526
Bsp143I	GATC	3 cut(s)	209, 466, 483
Bsp19I	CCATGG	1 cut(s)	584
BspANI	GGCC	6 cut(s)	197, 292, 303, 398, 422, 551
BspCNI	CTCAG	3 cut(s)	7, 286, 600
BspFNI	CGCG	1 cut(s)	206
BspLI	GGNNCC	4 cut(s)	129, 150, 335, 582
BspMI	ACCTGC	1 cut(s)	565
BspOI	GCTAGC	1 cut(s)	510
BspPI	GGATC	1 cut(s)	204
BspT107I	GGYRCC	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	422
BsrI	ACTGG	1 cut(s)	136
BssAI	RCCGGY	1 cut(s)	422
BssECI	CCNNGG	5 cut(s)	89, 192, 213, 227, 584
BssMI	GATC	3 cut(s)	209, 466, 483
BssNI	GRCGYC	2 cut(s)	101, 149
BssT1I	CCWWGG	3 cut(s)	192, 213, 584
Bst2UI	CCWGG	2 cut(s)	90, 400
Bst4CI	ACNGT	2 cut(s)	280, 625
BstACI	GRCGYC	2 cut(s)	101, 149
BstC8I	GCNNGC	5 cut(s)	34, 51, 74, 508, 553
BstDEI	CTNAG	3 cut(s)	15, 294, 608
BstDSI	CCRYGG	1 cut(s)	584
BstF5I	GGATG	2 cut(s)	99, 292
BstFNI	CGCG	1 cut(s)	206
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	2 cut(s)	151, 206
BstKTI	GATC	3 cut(s)	212, 469, 486
BstMAI	GTCTC	3 cut(s)	127, 182, 583
BstMBI	GATC	3 cut(s)	209, 466, 483
BstMWI	GCNNNNNNNGC	7 cut(s)	82, 103, 109, 203, 289, 366, 369
BstNI	CCWGG	2 cut(s)	90, 400
BstNSI	RCATGY	2 cut(s)	265, 547
BstPAI	GACNNNNGTC	1 cut(s)	119
BstSCI	CCNGG	3 cut(s)	88, 151, 398
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	2 cut(s)	96, 207
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
Bsu36I	CCTNAGG	1 cut(s)	294
BsuRI	GGCC	6 cut(s)	197, 292, 303, 398, 422, 551
BtgI	CCRYGG	1 cut(s)	584
BtsCI	GGATG	2 cut(s)	99, 292
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	27, 143
BveI	ACCTGC	1 cut(s)	565
Cac8I	GCNNGC	5 cut(s)	34, 51, 74, 508, 553
CaiI	CAGNNNCTG	1 cut(s)	558
CfoI	GCGC	2 cut(s)	151, 206
Cfr10I	RCCGGY	1 cut(s)	422
Cfr13I	GGNCC	4 cut(s)	290, 301, 396, 549
CseI	GACGC	2 cut(s)	109, 600
CviAII	CATG	3 cut(s)	262, 544, 585
DdeI	CTNAG	3 cut(s)	15, 294, 608
DinI	GGCGCC	1 cut(s)	150
DpnI	GATC	3 cut(s)	211, 468, 485
DpnII	GATC	3 cut(s)	209, 466, 483
EciI	GGCGGA	1 cut(s)	192
Eco130I	CCWWGG	3 cut(s)	192, 213, 584
Eco24I	GRGCYC	1 cut(s)	338
Eco31I	GGTCTC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	102
Eco81I	CCTNAGG	1 cut(s)	294
Eco88I	CYCGRG	2 cut(s)	80, 337
EcoRII	CCWGG	2 cut(s)	88, 398
EcoT14I	CCWWGG	3 cut(s)	192, 213, 584
EcoT22I	ATGCAT	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	338
EgeI	GGCGCC	1 cut(s)	150
EheI	GGCGCC	1 cut(s)	150
ErhI	CCWWGG	3 cut(s)	192, 213, 584
Esp3I	CGTCTC	1 cut(s)	583
FaeI	CATG	3 cut(s)	265, 547, 588
FaiI	YATR	7 cut(s)	41, 263, 324, 389, 545, 586, 633
FalI	AAGNNNNNCTT	2 cut(s)	494, 526
FatI	CATG	3 cut(s)	261, 543, 584
FauI	CCCGC	1 cut(s)	365
FokI	GGATG	2 cut(s)	106, 299
FriOI	GRGCYC	1 cut(s)	338
FspBI	CTAG	2 cut(s)	507, 657
GlaI	GCGC	2 cut(s)	150, 205
GsuI	CTGGAG	1 cut(s)	72
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	6 cut(s)	197, 292, 303, 398, 422, 551
HapII	CCGG	3 cut(s)	152, 304, 423
HgaI	GACGC	2 cut(s)	109, 600
HhaI	GCGC	2 cut(s)	151, 206
Hin1I	GRCGYC	2 cut(s)	101, 149
Hin1II	CATG	3 cut(s)	265, 547, 588
Hin6I	GCGC	2 cut(s)	149, 204
HinP1I	GCGC	2 cut(s)	149, 204
HindIII	AAGCTT	1 cut(s)	565
HinfI	GANTC	2 cut(s)	11, 307
HpaII	CCGG	3 cut(s)	152, 304, 423
HphI	GGTGA	4 cut(s)	250, 437, 476, 490
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	5 cut(s)	16, 69, 228, 408, 471
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	277
HpyAV	CCTTC	1 cut(s)	276
HpyCH4III	ACNGT	2 cut(s)	280, 625
HpyCH4V	TGCA	1 cut(s)	326
HpyF10VI	GCNNNNNNNGC	7 cut(s)	82, 103, 109, 203, 289, 366, 369
HpyF3I	CTNAG	3 cut(s)	15, 294, 608
Hsp92I	GRCGYC	2 cut(s)	101, 149
Hsp92II	CATG	3 cut(s)	265, 547, 588
HspAI	GCGC	2 cut(s)	149, 204
KasI	GGCGCC	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	209, 466, 483
LmnI	GCTCC	2 cut(s)	217, 333
Lsp1109I	GCAGC	2 cut(s)	96, 207
LweI	GCATC	2 cut(s)	84, 564
MaeI	CTAG	2 cut(s)	507, 657
MaeIII	GTNAC	1 cut(s)	537
MalI	GATC	3 cut(s)	211, 468, 485
MboI	GATC	3 cut(s)	209, 466, 483
MboII	GAAGA	3 cut(s)	421, 493, 505
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	2 cut(s)	338, 526
MluCI	AATT	2 cut(s)	433, 648
Mly113I	GGCGCC	1 cut(s)	149
MlyI	GAGTC	2 cut(s)	20, 301
MmeI	TCCRAC	1 cut(s)	607
Mph1103I	ATGCAT	1 cut(s)	328
MseI	TTAA	3 cut(s)	351, 569, 661
MslI	CAYNNNNRTG	1 cut(s)	544
MspA1I	CMGCKG	2 cut(s)	109, 459
MspI	CCGG	3 cut(s)	152, 304, 423
MspR9I	CCNGG	3 cut(s)	90, 153, 400
MvaI	CCWGG	2 cut(s)	90, 400
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	7 cut(s)	82, 103, 109, 203, 289, 366, 369
NarI	GGCGCC	1 cut(s)	149
NciI	CCSGG	1 cut(s)	153
NcoI	CCATGG	1 cut(s)	584
NdeII	GATC	3 cut(s)	209, 466, 483
NheI	GCTAGC	1 cut(s)	506
NlaIII	CATG	3 cut(s)	265, 547, 588
NlaIV	GGNNCC	4 cut(s)	129, 150, 335, 582
NmuCI	GTSAC	1 cut(s)	537
NsiI	ATGCAT	1 cut(s)	328
NspI	RCATGY	2 cut(s)	265, 547
OliI	CACNNNNGTG	1 cut(s)	544
PaqCI	CACCTGC	1 cut(s)	565
PciI	ACATGT	1 cut(s)	543
PflFI	GACNNNGTC	1 cut(s)	310
PleI	GAGTC	2 cut(s)	19, 301
PluTI	GGCGCC	1 cut(s)	152
PpsI	GAGTC	2 cut(s)	19, 301
PscI	ACATGT	1 cut(s)	543
PshAI	GACNNNNGTC	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	88, 398
PspGI	CCWGG	2 cut(s)	88, 398
PspN4I	GGNNCC	4 cut(s)	129, 150, 335, 582
PspPI	GGNCC	4 cut(s)	290, 301, 396, 549
PstNI	CAGNNNCTG	1 cut(s)	558
PsuI	RGATCY	1 cut(s)	209
PsyI	GACNNNGTC	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	544
SaqAI	TTAA	3 cut(s)	351, 569, 661
Sau3AI	GATC	3 cut(s)	209, 466, 483
Sau96I	GGNCC	4 cut(s)	290, 301, 396, 549
SchI	GAGTC	2 cut(s)	20, 301
ScrFI	CCNGG	3 cut(s)	90, 153, 400
SduI	GDGCHC	2 cut(s)	338, 526
SfaNI	GCATC	2 cut(s)	84, 564
SfoI	GGCGCC	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	544
SmlI	CTYRAG	1 cut(s)	532
SmoI	CTYRAG	1 cut(s)	532
SpeI	ACTAGT	1 cut(s)	656
Sse9I	AATT	2 cut(s)	433, 648
SspDI	GGCGCC	1 cut(s)	148
SspMI	CTAG	2 cut(s)	507, 657
StyD4I	CCNGG	3 cut(s)	88, 151, 398
StyI	CCWWGG	3 cut(s)	192, 213, 584
TaaI	ACNGT	2 cut(s)	280, 625
TaqI	TCGA	1 cut(s)	438
TasI	AATT	2 cut(s)	433, 648
TauI	GCSGC	8 cut(s)	106, 109, 177, 363, 366, 369, 372, 462
Tru1I	TTAA	3 cut(s)	351, 569, 661
Tru9I	TTAA	3 cut(s)	351, 569, 661
TscAI	CASTG	2 cut(s)	27, 143
TseFI	GTSAC	1 cut(s)	537
TseI	GCWGC	2 cut(s)	109, 220
Tsp45I	GTSAC	1 cut(s)	537
TspDTI	ATGAA	1 cut(s)	648
TspRI	CASTG	2 cut(s)	27, 143
Tth111I	GACNNNGTC	1 cut(s)	310
XceI	RCATGY	2 cut(s)	265, 547
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XspI	CTAG	2 cut(s)	507, 657
Zsp2I	ATGCAT	1 cut(s)	328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.