Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0009927

Physical Location & Seq

Genomic Coordinates Reverse (-)

20269178 .. 20270578

Gene Structure 1401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g22780.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGTCTCGGAAAAAAGCATAACACCGAAGCTGTCGCTGTTCTCGCTTCCTTCCCAGTCGCCGGAGTCGCCGGGGATGCTAACTCCACCTCTCCAAACCTCCGCCTCGGTTCCATTCCAGTGGGAGGAAGCTCCAGGAAAGCCGAGGAACTGCGGTGGCAGCGCAGAATCCAAACCCAAGTGCGCCAGATCCTTGGAGCTGCCTCCGAGGTTGCTGAGCGAGGCGGCCAAAACTACCAACATGCCCTCCCCGATCACCGTGTTGGACGGGCCTGACGTTGGGCGGACTATGTCTTTTTCGTTCAGAGATAGGAGCCCTGATGCTTTTGGGATCAGTAAGAGGTTGAGCAAGGAGAGTTGTAGGAGGGGCGCCGGCGGTTTTGGGTCTATGAGGTTGGGGAGTTTTAGGAAGAGCAAGGAGGTTGTTGGCCAGGGCGGCTTTGACTTTTTGCCTCCGGCTAGTGGCGGCGGTGGCGGTGGTGAAACGAAGGTGAATATCACAAGAGTTGGGAGGAGAGCCAGTTTCTTGAATGATTCCAACACAAGGTCACGTATGTGGGCAAGCATTTGCGAAAGCTTTAAGCAGGTGGTCCCATGGAGACGCAGGCAAGAAAAAATGAGAAAAATGGCCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

212

Amino Acids

22.87

Weight (kDa)

10.48

Isoelectric Point (pI)

72.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27810 AT5G53030 AT5G53030
fragaria_vesca	FvH4_7g31360
malus_domestica	MD01G1217700.v1.1 MD07G1286900.v1.1
prunus_persica	Prupe.2G309000_v2.0.a1 Prupe.6G127900_v2.0.a1
pyrus_communis	pycom01g22780 pycom07g26020
rosa_chinensis	RchiOBHm_Chr1g0380431
rosa_laevigata	RLG00000026301
rosa_multiflora	Rmu_sc0005371.1_g000009 Rmu_sc0005371.1_g000010
rosa_roxburghii	Rroxscaffold_4G00279380
rosa_rugosa	Rorug01G0421100
rosa_samantha	Rh1AG445400 Rh1BG400700 Rh1CG415100 Rh1DG430800
rosa_wichuraiana	Rw1G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	574
Acc36I	ACCTGC	1 cut(s)	574
AccB1I	GGYRCC	1 cut(s)	368
AciI	CCGC	9 cut(s)	102, 153, 224, 283, 375, 435, 465, 468, 474
AclWI	GGATC	2 cut(s)	183, 338
AcoI	YGGCCR	2 cut(s)	225, 427
AcyI	GRCGYC	1 cut(s)	369
AfiI	CCNNNNNNNGG	5 cut(s)	61, 124, 278, 461, 543
AgsI	TTSAA	1 cut(s)	529
AjnI	CCWGG	2 cut(s)	133, 429
AleI	CACNNNNGTG	1 cut(s)	553
AluBI	AGCT	4 cut(s)	31, 131, 199, 576
AluI	AGCT	4 cut(s)	31, 131, 199, 576
Alw26I	GTCTC	2 cut(s)	10, 592
AlwI	GGATC	2 cut(s)	183, 338
AoxI	GGCC	4 cut(s)	225, 269, 427, 627
ApeKI	GCWGC	2 cut(s)	159, 199
AspLEI	GCGC	3 cut(s)	164, 185, 371
AspS9I	GGNCC	2 cut(s)	269, 589
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	3 cut(s)	247, 491, 502
AvaII	GGWCC	1 cut(s)	589
BalI	TGGCCA	1 cut(s)	429
BanI	GGYRCC	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	317
BbvI	GCAGC	2 cut(s)	171, 186
BciT130I	CCWGG	2 cut(s)	135, 431
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	2 cut(s)	10, 592
BfaI	CTAG	1 cut(s)	459
BfoI	RGCGCY	1 cut(s)	372
BfuAI	ACCTGC	1 cut(s)	574
BglI	GCCNNNNNGGC	1 cut(s)	435
BisI	GCNGC	5 cut(s)	160, 200, 225, 436, 466
BlpI	GCTNAGC	1 cut(s)	215
BlsI	GCNGC	5 cut(s)	161, 201, 226, 437, 467
Bme1390I	CCNGG	3 cut(s)	72, 135, 431
Bme18I	GGWCC	1 cut(s)	589
BmgT120I	GGNCC	2 cut(s)	269, 589
BmiI	GGNNCC	4 cut(s)	111, 314, 370, 591
BmrFI	CCNGG	3 cut(s)	72, 135, 431
BmrI	ACTGGG	1 cut(s)	49
BmsI	GCATC	2 cut(s)	66, 310
BmuI	ACTGGG	1 cut(s)	49
BpmI	CTGGAG	1 cut(s)	117
Bpu1102I	GCTNAGC	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	72
BsaAI	YACGTR	1 cut(s)	551
BsaHI	GRCGYC	1 cut(s)	369
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	7 cut(s)	71, 105, 143, 192, 206, 430, 593
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 260, 505, 535
Bsc4I	CCNNNNNNNGG	5 cut(s)	61, 124, 278, 461, 543
Bse118I	RCCGGY	1 cut(s)	371
Bse1I	ACTGG	3 cut(s)	55, 118, 519
BseBI	CCWGG	2 cut(s)	135, 431
BseDI	CCNNGG	7 cut(s)	71, 105, 143, 192, 206, 430, 593
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	5 cut(s)	61, 124, 278, 461, 543
BseMII	CTCAG	1 cut(s)	206
BseNI	ACTGG	3 cut(s)	55, 118, 519
BseRI	GAGGAG	1 cut(s)	526
BseXI	GCAGC	2 cut(s)	171, 186
BshFI	GGCC	4 cut(s)	227, 271, 429, 629
BshNI	GGYRCC	1 cut(s)	368
BsiSI	CCGG	4 cut(s)	62, 71, 372, 455
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	5 cut(s)	61, 124, 278, 461, 543
BsmAI	GTCTC	2 cut(s)	10, 592
BsmBI	CGTCTC	1 cut(s)	592
BsmFI	GGGAC	1 cut(s)	575
BsnI	GGCC	4 cut(s)	227, 271, 429, 629
Bso31I	GGTCTC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	317
Bsp143I	GATC	3 cut(s)	188, 252, 330
Bsp1720I	GCTNAGC	1 cut(s)	215
Bsp19I	CCATGG	1 cut(s)	593
BspACI	CCGC	9 cut(s)	102, 153, 224, 283, 375, 435, 465, 468, 474
BspANI	GGCC	4 cut(s)	227, 271, 429, 629
BspCNI	CTCAG	1 cut(s)	207
BspLI	GGNNCC	4 cut(s)	111, 314, 370, 591
BspMI	ACCTGC	1 cut(s)	574
BspPI	GGATC	2 cut(s)	183, 338
BspQI	GCTCTTC	1 cut(s)	404
BspT107I	GGYRCC	1 cut(s)	368
BspTNI	GGTCTC	1 cut(s)	10
BsrFI	RCCGGY	1 cut(s)	371
BsrI	ACTGG	3 cut(s)	55, 118, 519
BssAI	RCCGGY	1 cut(s)	371
BssECI	CCNNGG	7 cut(s)	71, 105, 143, 192, 206, 430, 593
BssMI	GATC	3 cut(s)	188, 252, 330
BssNI	GRCGYC	1 cut(s)	369
BssT1I	CCWWGG	2 cut(s)	192, 593
Bst2UI	CCWGG	2 cut(s)	135, 431
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	1 cut(s)	404
BstACI	GRCGYC	1 cut(s)	369
BstBAI	YACGTR	1 cut(s)	551
BstC8I	GCNNGC	3 cut(s)	373, 562, 605
BstDEI	CTNAG	1 cut(s)	215
BstDSI	CCRYGG	1 cut(s)	593
BstF5I	GGATG	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	372
BstHHI	GCGC	3 cut(s)	164, 185, 371
BstKTI	GATC	3 cut(s)	191, 255, 333
BstMAI	GTCTC	2 cut(s)	10, 592
BstMBI	GATC	3 cut(s)	188, 252, 330
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 67, 76, 159, 435, 471
BstNI	CCWGG	2 cut(s)	135, 431
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	3 cut(s)	70, 133, 429
BstV1I	GCAGC	2 cut(s)	171, 186
BstX2I	RGATCY	1 cut(s)	188
BstXI	CCANNNNNNTGG	2 cut(s)	120, 193
BstYI	RGATCY	1 cut(s)	188
BsuRI	GGCC	4 cut(s)	227, 271, 429, 629
BtgI	CCRYGG	1 cut(s)	593
BtsCI	GGATG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	125
BveI	ACCTGC	1 cut(s)	574
Cac8I	GCNNGC	3 cut(s)	373, 562, 605
CfoI	GCGC	3 cut(s)	164, 185, 371
Cfr10I	RCCGGY	1 cut(s)	371
Cfr13I	GGNCC	2 cut(s)	269, 589
CseI	GACGC	1 cut(s)	609
CviAII	CATG	2 cut(s)	241, 594
DdeI	CTNAG	1 cut(s)	215
DinI	GGCGCC	1 cut(s)	370
DpnI	GATC	3 cut(s)	190, 254, 332
DpnII	GATC	3 cut(s)	188, 252, 330
EaeI	YGGCCR	2 cut(s)	225, 427
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
EciI	GGCGGA	2 cut(s)	91, 298
Eco130I	CCWWGG	2 cut(s)	192, 593
Eco24I	GRGCYC	1 cut(s)	317
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	589
EcoRII	CCWGG	2 cut(s)	133, 429
EcoT14I	CCWWGG	2 cut(s)	192, 593
EcoT38I	GRGCYC	1 cut(s)	317
EgeI	GGCGCC	1 cut(s)	370
EheI	GGCGCC	1 cut(s)	370
ErhI	CCWWGG	2 cut(s)	192, 593
Esp3I	CGTCTC	1 cut(s)	592
FaeI	CATG	2 cut(s)	244, 597
FaiI	YATR	6 cut(s)	20, 242, 290, 389, 554, 595
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	2 cut(s)	240, 593
Fnu4HI	GCNGC	5 cut(s)	160, 200, 225, 436, 466
FokI	GGATG	1 cut(s)	88
FriOI	GRGCYC	1 cut(s)	317
Fsp4HI	GCNGC	5 cut(s)	160, 200, 225, 436, 466
FspBI	CTAG	1 cut(s)	459
GlaI	GCGC	3 cut(s)	163, 184, 370
GluI	GCNGC	5 cut(s)	160, 200, 225, 436, 466
GsuI	CTGGAG	1 cut(s)	117
HaeII	RGCGCY	1 cut(s)	372
HaeIII	GGCC	4 cut(s)	227, 271, 429, 629
HapII	CCGG	4 cut(s)	62, 71, 372, 455
HgaI	GACGC	1 cut(s)	609
HhaI	GCGC	3 cut(s)	164, 185, 371
Hin1I	GRCGYC	1 cut(s)	369
Hin1II	CATG	2 cut(s)	244, 597
Hin6I	GCGC	3 cut(s)	162, 183, 369
HinP1I	GCGC	3 cut(s)	162, 183, 369
HindIII	AAGCTT	1 cut(s)	574
HinfI	GANTC	3 cut(s)	65, 167, 533
HpaII	CCGG	4 cut(s)	62, 71, 372, 455
HphI	GGTGA	3 cut(s)	247, 491, 502
Hpy188I	TCNGA	3 cut(s)	10, 207, 305
Hpy188III	TCNNGA	1 cut(s)	526
HpyAV	CCTTC	2 cut(s)	60, 481
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	2 cut(s)	276, 550
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 67, 76, 159, 435, 471
HpyF3I	CTNAG	1 cut(s)	215
HpySE526I	ACGT	2 cut(s)	276, 550
Hsp92I	GRCGYC	1 cut(s)	369
Hsp92II	CATG	2 cut(s)	244, 597
HspAI	GCGC	3 cut(s)	162, 183, 369
KasI	GGCGCC	1 cut(s)	368
KroI	GCCGGC	1 cut(s)	371
KroNI	GCCGGC	1 cut(s)	373
Kzo9I	GATC	3 cut(s)	188, 252, 330
LguI	GCTCTTC	1 cut(s)	404
LmnI	GCTCC	3 cut(s)	136, 196, 312
Lsp1109I	GCAGC	2 cut(s)	171, 186
LweI	GCATC	2 cut(s)	66, 310
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	2 cut(s)	276, 550
MaeIII	GTNAC	1 cut(s)	546
MalI	GATC	3 cut(s)	190, 254, 332
MboI	GATC	3 cut(s)	188, 252, 330
MboII	GAAGA	1 cut(s)	421
MflI	RGATCY	1 cut(s)	188
MhlI	GDGCHC	1 cut(s)	317
MlsI	TGGCCA	1 cut(s)	429
MluNI	TGGCCA	1 cut(s)	429
Mly113I	GGCGCC	1 cut(s)	369
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	2 cut(s)	243, 561
Mox20I	TGGCCA	1 cut(s)	429
MreI	CGCCGGCG	1 cut(s)	371
MroNI	GCCGGC	1 cut(s)	371
MscI	TGGCCA	1 cut(s)	429
MseI	TTAA	1 cut(s)	579
MslI	CAYNNNNRTG	2 cut(s)	118, 553
Msp20I	TGGCCA	1 cut(s)	429
MspI	CCGG	4 cut(s)	62, 71, 372, 455
MspR9I	CCNGG	3 cut(s)	72, 135, 431
MvaI	CCWGG	2 cut(s)	135, 431
MwoI	GCNNNNNNNGC	6 cut(s)	43, 67, 76, 159, 435, 471
NaeI	GCCGGC	1 cut(s)	373
NarI	GGCGCC	1 cut(s)	369
NciI	CCSGG	1 cut(s)	72
NcoI	CCATGG	1 cut(s)	593
NdeII	GATC	3 cut(s)	188, 252, 330
NgoMIV	GCCGGC	1 cut(s)	371
NlaIII	CATG	2 cut(s)	244, 597
NlaIV	GGNNCC	4 cut(s)	111, 314, 370, 591
NmeAIII	GCCGAG	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	546
NspI	RCATGY	1 cut(s)	244
OliI	CACNNNNGTG	1 cut(s)	553
PaqCI	CACCTGC	1 cut(s)	574
PciSI	GCTCTTC	1 cut(s)	404
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PdiI	GCCGGC	1 cut(s)	373
PfeI	GAWTC	2 cut(s)	167, 533
PflFI	GACNNNGTC	1 cut(s)	289
PfoI	TCCNGGA	1 cut(s)	133
PkrI	GCNGC	5 cut(s)	161, 201, 226, 437, 467
PleI	GAGTC	1 cut(s)	73
PluTI	GGCGCC	1 cut(s)	372
PpsI	GAGTC	1 cut(s)	73
Ppu21I	YACGTR	1 cut(s)	551
Psp6I	CCWGG	2 cut(s)	133, 429
PspGI	CCWGG	2 cut(s)	133, 429
PspN4I	GGNNCC	4 cut(s)	111, 314, 370, 591
PspPI	GGNCC	2 cut(s)	269, 589
PsuI	RGATCY	1 cut(s)	188
PsyI	GACNNNGTC	1 cut(s)	289
RseI	CAYNNNNRTG	2 cut(s)	118, 553
SapI	GCTCTTC	1 cut(s)	404
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	5 cut(s)	160, 200, 225, 436, 466
Sau3AI	GATC	3 cut(s)	188, 252, 330
Sau96I	GGNCC	2 cut(s)	269, 589
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	3 cut(s)	72, 135, 431
SduI	GDGCHC	1 cut(s)	317
SfaNI	GCATC	2 cut(s)	66, 310
SfoI	GGCGCC	1 cut(s)	370
SgrAI	CRCCGGYG	1 cut(s)	371
SinI	GGWCC	1 cut(s)	589
SmiMI	CAYNNNNRTG	2 cut(s)	118, 553
SsiI	CCGC	9 cut(s)	102, 153, 224, 283, 375, 435, 465, 468, 474
SspDI	GGCGCC	1 cut(s)	368
SspMI	CTAG	1 cut(s)	459
StyD4I	CCNGG	3 cut(s)	70, 133, 429
StyI	CCWWGG	2 cut(s)	192, 593
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	2 cut(s)	279, 553
TauI	GCSGC	3 cut(s)	227, 438, 468
TfiI	GAWTC	2 cut(s)	167, 533
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	1 cut(s)	125
TseFI	GTSAC	1 cut(s)	546
TseI	GCWGC	2 cut(s)	159, 199
Tsp45I	GTSAC	1 cut(s)	546
TspRI	CASTG	1 cut(s)	125
Tth111I	GACNNNGTC	1 cut(s)	289
VpaK11BI	GGWCC	1 cut(s)	589
XceI	RCATGY	1 cut(s)	244
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.