Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009927

Physical Location & Seq

Genomic Coordinates Reverse (-)

66098460 .. 66100268

Gene Structure 1809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60370

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGAGAAGGAGTCTGAGGCAGTGAACGAAGCAAGCCCCATAAGGAAGCTGGCTCTGTTCTCACTTCCGAGCCAGCCACCCGAGCCTCCAGGGATGCTGACGCCGCCGCTGCTGACTTCAGTCTCGGTTCCTTTCCAGTGGGAGGAGGCGCCGGGAAAACCCCGACACTTCGGCGGCGGAGAAGGCGGCGGAGGAACAGAGACCAAGGCCAAGTGCGCGAGATCCTTGGAGCTGCCTCCGAGGTTGTTGGTGAGTGAGGCTAAAGTTACCAACATGCCTTCCCCGACGACTGTGCTGGATGGACCTGAGGTGGGCCGGACTCTGTCGTTTTCGTATGCATTGAGGAGCCCGAGCAAGGAGGTTAAGGGCGGCGGCGGCGGGGGGTTTGGGTCTATGAGGTGGGCCAGGTTTCGGAAGAACAAGGAGGCCGGTGAGGGCAATTTCGACTTTCCGCCTACCGACAGCGGTGGTGATCGGACAAAGGTGAAGATCACAAGGGTTAGGAGTAAGGCTAGCTTCTTCAATGGTGCTCATCACTCAAGGTCACACATGTGGGCCAGCATCTGTGAAAGCTTAAAGCAGGTGGTTCCATGGAGACGCAGACAGGAAAAACTGAGAAAATCTGCTACTGTTGGATATGAACCTCAAAATCCAATTCTCACTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF688

Protein Analysis

222

Amino Acids

24.16

Weight (kDa)

9.91

Isoelectric Point (pI)

61.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27810 AT5G53030 AT5G53030
fragaria_vesca	FvH4_7g31360
malus_domestica	MD01G1217700.v1.1 MD07G1286900.v1.1
prunus_persica	Prupe.2G309000_v2.0.a1 Prupe.6G127900_v2.0.a1
pyrus_communis	pycom01g22780 pycom07g26020
rosa_chinensis	RchiOBHm_Chr1g0380431
rosa_laevigata	RLG00000026301
rosa_multiflora	Rmu_sc0005371.1_g000009 Rmu_sc0005371.1_g000010
rosa_roxburghii	Rroxscaffold_4G00279380
rosa_rugosa	Rorug01G0421100
rosa_samantha	Rh1AG445400 Rh1BG400700 Rh1CG415100 Rh1DG430800
rosa_wichuraiana	Rw1G038760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	571
Acc36I	ACCTGC	1 cut(s)	571
AccB1I	GGYRCC	1 cut(s)	148
AccII	CGCG	1 cut(s)	218
AclWI	GGATC	1 cut(s)	216
AcuI	CTGAAG	1 cut(s)	102
AcyI	GRCGYC	2 cut(s)	101, 149
AfiI	CCNNNNNNNGG	4 cut(s)	142, 311, 355, 411
AflIII	ACRYGT	1 cut(s)	549
AgsI	TTSAA	1 cut(s)	523
AhlI	ACTAGT	1 cut(s)	662
AjnI	CCWGG	2 cut(s)	88, 404
AleI	CACNNNNGTG	1 cut(s)	550
AluBI	AGCT	4 cut(s)	49, 232, 516, 573
AluI	AGCT	4 cut(s)	49, 232, 516, 573
Alw21I	GWGCWC	1 cut(s)	532
Alw26I	GTCTC	3 cut(s)	127, 194, 589
AlwI	GGATC	1 cut(s)	216
AlwNI	CAGNNNCTG	1 cut(s)	564
Ama87I	CYCGRG	2 cut(s)	80, 349
AoxI	GGCC	5 cut(s)	207, 313, 402, 426, 555
ApeKI	GCWGC	2 cut(s)	109, 232
AspLEI	GCGC	2 cut(s)	151, 218
AspS9I	GGNCC	4 cut(s)	302, 313, 402, 555
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	4 cut(s)	262, 443, 482, 496
AsuNHI	GCTAGC	1 cut(s)	512
AvaI	CYCGRG	2 cut(s)	80, 349
AvaII	GGWCC	1 cut(s)	302
AxyI	CCTNAGG	1 cut(s)	306
BanI	GGYRCC	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	350
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	2 cut(s)	96, 219
BccI	CCATC	1 cut(s)	293
BcgI	CGANNNNNNTGC	2 cut(s)	274, 308
BciT130I	CCWGG	2 cut(s)	90, 406
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	3 cut(s)	127, 194, 589
BcuI	ACTAGT	1 cut(s)	662
BfaI	CTAG	2 cut(s)	513, 663
BfoI	RGCGCY	1 cut(s)	152
BfuAI	ACCTGC	1 cut(s)	571
BisI	GCNGC	9 cut(s)	104, 107, 110, 175, 187, 233, 370, 373, 376
BlsI	GCNGC	9 cut(s)	105, 108, 111, 176, 188, 234, 371, 374, 377
Bme1390I	CCNGG	3 cut(s)	90, 153, 406
Bme18I	GGWCC	1 cut(s)	302
BmeT110I	CYCGRG	2 cut(s)	80, 349
BmgT120I	GGNCC	4 cut(s)	302, 313, 402, 555
BmiI	GGNNCC	4 cut(s)	129, 150, 347, 588
BmrFI	CCNGG	3 cut(s)	90, 153, 406
BmsI	GCATC	2 cut(s)	84, 570
BmtI	GCTAGC	1 cut(s)	516
BoxI	GACNNNNGTC	1 cut(s)	119
BpmI	CTGGAG	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	523
BpuMI	CCSGG	1 cut(s)	153
BsaHI	GRCGYC	2 cut(s)	101, 149
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	5 cut(s)	89, 204, 225, 239, 590
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	4 cut(s)	142, 311, 355, 411
Bse118I	RCCGGY	1 cut(s)	428
Bse1I	ACTGG	1 cut(s)	136
Bse21I	CCTNAGG	1 cut(s)	306
BseBI	CCWGG	2 cut(s)	90, 406
BseDI	CCNNGG	5 cut(s)	89, 204, 225, 239, 590
BseGI	GGATG	2 cut(s)	99, 304
BseLI	CCNNNNNNNGG	4 cut(s)	142, 311, 355, 411
BseMII	CTCAG	3 cut(s)	6, 297, 605
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	2 cut(s)	158, 358
BseXI	GCAGC	2 cut(s)	96, 219
Bsh1236I	CGCG	1 cut(s)	218
BshFI	GGCC	5 cut(s)	209, 315, 404, 428, 557
BshNI	GGYRCC	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	532
BsiHKCI	CYCGRG	2 cut(s)	80, 349
BsiSI	CCGG	3 cut(s)	152, 316, 429
BslI	CCNNNNNNNGG	4 cut(s)	142, 311, 355, 411
BsmAI	GTCTC	3 cut(s)	127, 194, 589
BsmBI	CGTCTC	1 cut(s)	589
BsnI	GGCC	5 cut(s)	209, 315, 404, 428, 557
Bso31I	GGTCTC	1 cut(s)	194
BsoBI	CYCGRG	2 cut(s)	80, 349
Bsp1286I	GDGCHC	2 cut(s)	350, 532
Bsp143I	GATC	3 cut(s)	221, 472, 489
Bsp19I	CCATGG	1 cut(s)	590
BspANI	GGCC	5 cut(s)	209, 315, 404, 428, 557
BspCNI	CTCAG	3 cut(s)	7, 298, 606
BspFNI	CGCG	1 cut(s)	218
BspLI	GGNNCC	4 cut(s)	129, 150, 347, 588
BspMI	ACCTGC	1 cut(s)	571
BspOI	GCTAGC	1 cut(s)	516
BspPI	GGATC	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	148
BspTNI	GGTCTC	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	428
BsrI	ACTGG	1 cut(s)	136
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	5 cut(s)	89, 204, 225, 239, 590
BssMI	GATC	3 cut(s)	221, 472, 489
BssNI	GRCGYC	2 cut(s)	101, 149
BssT1I	CCWWGG	3 cut(s)	204, 225, 590
Bst2UI	CCWGG	2 cut(s)	90, 406
Bst4CI	ACNGT	2 cut(s)	292, 631
BstACI	GRCGYC	2 cut(s)	101, 149
BstC8I	GCNNGC	5 cut(s)	34, 51, 74, 514, 559
BstDEI	CTNAG	3 cut(s)	15, 306, 614
BstDSI	CCRYGG	1 cut(s)	590
BstF5I	GGATG	2 cut(s)	99, 304
BstFNI	CGCG	1 cut(s)	218
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	2 cut(s)	151, 218
BstKTI	GATC	3 cut(s)	224, 475, 492
BstMAI	GTCTC	3 cut(s)	127, 194, 589
BstMBI	GATC	3 cut(s)	221, 472, 489
BstMWI	GCNNNNNNNGC	6 cut(s)	82, 103, 109, 183, 215, 375
BstNI	CCWGG	2 cut(s)	90, 406
BstNSI	RCATGY	2 cut(s)	277, 553
BstPAI	GACNNNNGTC	1 cut(s)	119
BstSCI	CCNGG	3 cut(s)	88, 151, 404
BstUI	CGCG	1 cut(s)	218
BstV1I	GCAGC	2 cut(s)	96, 219
BstX2I	RGATCY	1 cut(s)	221
BstYI	RGATCY	1 cut(s)	221
Bsu36I	CCTNAGG	1 cut(s)	306
BsuRI	GGCC	5 cut(s)	209, 315, 404, 428, 557
BtgI	CCRYGG	1 cut(s)	590
BtsCI	GGATG	2 cut(s)	99, 304
BtsI	GCAGTG	1 cut(s)	27
BtsIMutI	CAGTG	2 cut(s)	27, 143
BveI	ACCTGC	1 cut(s)	571
Cac8I	GCNNGC	5 cut(s)	34, 51, 74, 514, 559
CaiI	CAGNNNCTG	1 cut(s)	564
CfoI	GCGC	2 cut(s)	151, 218
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	4 cut(s)	302, 313, 402, 555
CseI	GACGC	2 cut(s)	109, 606
CviAII	CATG	3 cut(s)	274, 550, 591
DdeI	CTNAG	3 cut(s)	15, 306, 614
DinI	GGCGCC	1 cut(s)	150
DpnI	GATC	3 cut(s)	223, 474, 491
DpnII	GATC	3 cut(s)	221, 472, 489
EciI	GGCGGA	3 cut(s)	192, 204, 441
Eco130I	CCWWGG	3 cut(s)	204, 225, 590
Eco24I	GRGCYC	1 cut(s)	350
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	102
Eco81I	CCTNAGG	1 cut(s)	306
Eco88I	CYCGRG	2 cut(s)	80, 349
EcoRII	CCWGG	2 cut(s)	88, 404
EcoT14I	CCWWGG	3 cut(s)	204, 225, 590
EcoT22I	ATGCAT	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	350
EgeI	GGCGCC	1 cut(s)	150
EheI	GGCGCC	1 cut(s)	150
ErhI	CCWWGG	3 cut(s)	204, 225, 590
Esp3I	CGTCTC	1 cut(s)	589
FaeI	CATG	3 cut(s)	277, 553, 594
FaiI	YATR	7 cut(s)	41, 275, 336, 395, 551, 592, 639
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FatI	CATG	3 cut(s)	273, 549, 590
FauI	CCCGC	1 cut(s)	371
Fnu4HI	GCNGC	9 cut(s)	104, 107, 110, 175, 187, 233, 370, 373, 376
FokI	GGATG	2 cut(s)	106, 311
FriOI	GRGCYC	1 cut(s)	350
Fsp4HI	GCNGC	9 cut(s)	104, 107, 110, 175, 187, 233, 370, 373, 376
FspBI	CTAG	2 cut(s)	513, 663
GlaI	GCGC	2 cut(s)	150, 217
GluI	GCNGC	9 cut(s)	104, 107, 110, 175, 187, 233, 370, 373, 376
GsuI	CTGGAG	1 cut(s)	72
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	5 cut(s)	209, 315, 404, 428, 557
HapII	CCGG	3 cut(s)	152, 316, 429
HgaI	GACGC	2 cut(s)	109, 606
HhaI	GCGC	2 cut(s)	151, 218
Hin1I	GRCGYC	2 cut(s)	101, 149
Hin1II	CATG	3 cut(s)	277, 553, 594
Hin6I	GCGC	2 cut(s)	149, 216
HinP1I	GCGC	2 cut(s)	149, 216
HindIII	AAGCTT	1 cut(s)	571
HinfI	GANTC	2 cut(s)	11, 319
HpaII	CCGG	3 cut(s)	152, 316, 429
HphI	GGTGA	4 cut(s)	262, 443, 482, 496
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	5 cut(s)	16, 69, 240, 414, 477
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	289
HpyAV	CCTTC	2 cut(s)	176, 288
HpyCH4III	ACNGT	2 cut(s)	292, 631
HpyCH4V	TGCA	1 cut(s)	338
HpyF10VI	GCNNNNNNNGC	6 cut(s)	82, 103, 109, 183, 215, 375
HpyF3I	CTNAG	3 cut(s)	15, 306, 614
Hsp92I	GRCGYC	2 cut(s)	101, 149
Hsp92II	CATG	3 cut(s)	277, 553, 594
HspAI	GCGC	2 cut(s)	149, 216
KasI	GGCGCC	1 cut(s)	148
Kzo9I	GATC	3 cut(s)	221, 472, 489
LmnI	GCTCC	2 cut(s)	229, 345
Lsp1109I	GCAGC	2 cut(s)	96, 219
LweI	GCATC	2 cut(s)	84, 570
MaeI	CTAG	2 cut(s)	513, 663
MaeIII	GTNAC	2 cut(s)	265, 543
MalI	GATC	3 cut(s)	223, 474, 491
MboI	GATC	3 cut(s)	221, 472, 489
MboII	GAAGA	3 cut(s)	427, 499, 511
MflI	RGATCY	1 cut(s)	221
MhlI	GDGCHC	2 cut(s)	350, 532
MluCI	AATT	2 cut(s)	439, 654
Mly113I	GGCGCC	1 cut(s)	149
MlyI	GAGTC	2 cut(s)	20, 313
MmeI	TCCRAC	1 cut(s)	613
Mph1103I	ATGCAT	1 cut(s)	340
MseI	TTAA	3 cut(s)	363, 575, 667
MslI	CAYNNNNRTG	1 cut(s)	550
MspA1I	CMGCKG	2 cut(s)	109, 465
MspI	CCGG	3 cut(s)	152, 316, 429
MspR9I	CCNGG	3 cut(s)	90, 153, 406
MvaI	CCWGG	2 cut(s)	90, 406
MvnI	CGCG	1 cut(s)	218
MwoI	GCNNNNNNNGC	6 cut(s)	82, 103, 109, 183, 215, 375
NarI	GGCGCC	1 cut(s)	149
NciI	CCSGG	1 cut(s)	153
NcoI	CCATGG	1 cut(s)	590
NdeII	GATC	3 cut(s)	221, 472, 489
NheI	GCTAGC	1 cut(s)	512
NlaIII	CATG	3 cut(s)	277, 553, 594
NlaIV	GGNNCC	4 cut(s)	129, 150, 347, 588
NmuCI	GTSAC	1 cut(s)	543
NsiI	ATGCAT	1 cut(s)	340
NspI	RCATGY	2 cut(s)	277, 553
OliI	CACNNNNGTG	1 cut(s)	550
PaqCI	CACCTGC	1 cut(s)	571
PciI	ACATGT	1 cut(s)	549
PflFI	GACNNNGTC	1 cut(s)	322
PkrI	GCNGC	9 cut(s)	105, 108, 111, 176, 188, 234, 371, 374, 377
PleI	GAGTC	2 cut(s)	19, 313
PluTI	GGCGCC	1 cut(s)	152
PpsI	GAGTC	2 cut(s)	19, 313
PscI	ACATGT	1 cut(s)	549
PshAI	GACNNNNGTC	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	88, 404
PspGI	CCWGG	2 cut(s)	88, 404
PspN4I	GGNNCC	4 cut(s)	129, 150, 347, 588
PspPI	GGNCC	4 cut(s)	302, 313, 402, 555
PstNI	CAGNNNCTG	1 cut(s)	564
PsuI	RGATCY	1 cut(s)	221
PsyI	GACNNNGTC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	550
SaqAI	TTAA	3 cut(s)	363, 575, 667
SatI	GCNGC	9 cut(s)	104, 107, 110, 175, 187, 233, 370, 373, 376
Sau3AI	GATC	3 cut(s)	221, 472, 489
Sau96I	GGNCC	4 cut(s)	302, 313, 402, 555
SchI	GAGTC	2 cut(s)	20, 313
ScrFI	CCNGG	3 cut(s)	90, 153, 406
SduI	GDGCHC	2 cut(s)	350, 532
SfaNI	GCATC	2 cut(s)	84, 570
SfoI	GGCGCC	1 cut(s)	150
SinI	GGWCC	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	550
SmlI	CTYRAG	1 cut(s)	538
SmoI	CTYRAG	1 cut(s)	538
SpeI	ACTAGT	1 cut(s)	662
Sse9I	AATT	2 cut(s)	439, 654
SspDI	GGCGCC	1 cut(s)	148
SspMI	CTAG	2 cut(s)	513, 663
StyD4I	CCNGG	3 cut(s)	88, 151, 404
StyI	CCWWGG	3 cut(s)	204, 225, 590
TaaI	ACNGT	2 cut(s)	292, 631
TaqI	TCGA	1 cut(s)	444
TasI	AATT	2 cut(s)	439, 654
TauI	GCSGC	7 cut(s)	106, 109, 177, 189, 372, 375, 378
Tru1I	TTAA	3 cut(s)	363, 575, 667
Tru9I	TTAA	3 cut(s)	363, 575, 667
TscAI	CASTG	2 cut(s)	27, 143
TseFI	GTSAC	1 cut(s)	543
TseI	GCWGC	2 cut(s)	109, 232
Tsp45I	GTSAC	1 cut(s)	543
TspDTI	ATGAA	1 cut(s)	654
TspRI	CASTG	2 cut(s)	27, 143
Tth111I	GACNNNGTC	1 cut(s)	322
VpaK11BI	GGWCC	1 cut(s)	302
XceI	RCATGY	2 cut(s)	277, 553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XspI	CTAG	2 cut(s)	513, 663
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.