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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G30090 |
| fragaria_vesca | FvH4_4g07490 FvH4_4g07490 FvH4_4g07490 |
| malus_domestica | MD16G1251700.v1.1 |
| prunus_persica | Prupe.1G078300_v2.0.a1 Prupe.1G078300_v2.0.a1 Prupe.1G078300_v2.0.a1 Prupe.1G078300_v2.0.a1 Prupe.1G078300_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr4g0399971 |
| rosa_laevigata | RLG00000009223 |
| rosa_roxburghii | Rroxscaffold_5G00344870 Rroxscaffold_5G00344890 |
| rosa_rugosa | Rorug04G0021900 |
| rosa_samantha | Rh4AG097500 Rh4BG095400 Rh4BG095500 Rh4CG106700 Rh4DG092400 |
| rosa_wichuraiana | Rw4G008080 Rw4G008090 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 1131 |
| AccB1I | GGYRCC | 1 cut(s) | 1131 |
| AciI | CCGC | 1 cut(s) | 1135 |
| AcuI | CTGAAG | 1 cut(s) | 986 |
| AfaI | GTAC | 3 cut(s) | 821, 867, 1133 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 223, 949, 1127 |
| AgeI | ACCGGT | 1 cut(s) | 988 |
| AgsI | TTSAA | 5 cut(s) | 164, 449, 563, 617, 695 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 498 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 839, 871 |
| AluBI | AGCT | 7 cut(s) | 16, 77, 404, 438, 445, 1010, 1028 |
| AluI | AGCT | 7 cut(s) | 16, 77, 404, 438, 445, 1010, 1028 |
| Alw26I | GTCTC | 3 cut(s) | 157, 1081, 1093 |
| AoxI | GGCC | 1 cut(s) | 1020 |
| ApeKI | GCWGC | 1 cut(s) | 105 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 135, 167 |
| AsiGI | ACCGGT | 1 cut(s) | 988 |
| Asp718I | GGTACC | 1 cut(s) | 1131 |
| AspS9I | GGNCC | 1 cut(s) | 1020 |
| AsuC2I | CCSGG | 2 cut(s) | 829, 1129 |
| AsuHPI | GGTGA | 3 cut(s) | 808, 973, 1151 |
| AxyI | CCTNAGG | 1 cut(s) | 1086 |
| BanI | GGYRCC | 1 cut(s) | 1131 |
| BbvI | GCAGC | 1 cut(s) | 92 |
| BccI | CCATC | 3 cut(s) | 452, 722, 951 |
| BclI | TGATCA | 1 cut(s) | 798 |
| BcnI | CCSGG | 2 cut(s) | 829, 1129 |
| BcoDI | GTCTC | 3 cut(s) | 157, 1081, 1093 |
| BfmI | CTRYAG | 2 cut(s) | 335, 1071 |
| BisI | GCNGC | 1 cut(s) | 106 |
| BlpI | GCTNAGC | 1 cut(s) | 197 |
| BlsI | GCNGC | 1 cut(s) | 107 |
| Bme1390I | CCNGG | 2 cut(s) | 829, 1129 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 498 |
| BmgT120I | GGNCC | 1 cut(s) | 1020 |
| BmiI | GGNNCC | 2 cut(s) | 1021, 1133 |
| BmrFI | CCNGG | 2 cut(s) | 829, 1129 |
| BmsI | GCATC | 3 cut(s) | 535, 643, 654 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 197 |
| BpuEI | CTTGAG | 2 cut(s) | 812, 939 |
| BpuMI | CCSGG | 2 cut(s) | 829, 1129 |
| Bsa29I | ATCGAT | 1 cut(s) | 456 |
| BsaJI | CCNNGG | 3 cut(s) | 217, 763, 999 |
| BsaWI | WCCGGW | 2 cut(s) | 292, 988 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 223, 949, 1127 |
| Bse118I | RCCGGY | 1 cut(s) | 988 |
| Bse1I | ACTGG | 1 cut(s) | 67 |
| Bse21I | CCTNAGG | 1 cut(s) | 1086 |
| Bse3DI | GCAATG | 1 cut(s) | 115 |
| BseCI | ATCGAT | 1 cut(s) | 456 |
| BseDI | CCNNGG | 3 cut(s) | 217, 763, 999 |
| BseGI | GGATG | 3 cut(s) | 759, 814, 1153 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 223, 949, 1127 |
| BseMI | GCAATG | 1 cut(s) | 115 |
| BseMII | CTCAG | 1 cut(s) | 105 |
| BseNI | ACTGG | 1 cut(s) | 67 |
| BseXI | GCAGC | 1 cut(s) | 92 |
| BshFI | GGCC | 1 cut(s) | 1022 |
| BshNI | GGYRCC | 1 cut(s) | 1131 |
| BshTI | ACCGGT | 1 cut(s) | 988 |
| BshVI | ATCGAT | 1 cut(s) | 456 |
| BsiSI | CCGG | 4 cut(s) | 293, 829, 989, 1128 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 223, 949, 1127 |
| BsmAI | GTCTC | 3 cut(s) | 157, 1081, 1093 |
| BsmBI | CGTCTC | 1 cut(s) | 157 |
| BsnI | GGCC | 1 cut(s) | 1022 |
| Bsp143I | GATC | 3 cut(s) | 115, 798, 978 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 197 |
| Bsp19I | CCATGG | 1 cut(s) | 999 |
| BspACI | CCGC | 1 cut(s) | 1135 |
| BspANI | GGCC | 1 cut(s) | 1022 |
| BspCNI | CTCAG | 1 cut(s) | 104 |
| BspDI | ATCGAT | 1 cut(s) | 456 |
| BspLI | GGNNCC | 2 cut(s) | 1021, 1133 |
| BspMAI | CTGCAG | 1 cut(s) | 1075 |
| BspQI | GCTCTTC | 1 cut(s) | 165 |
| BspT107I | GGYRCC | 1 cut(s) | 1131 |
| BsrDI | GCAATG | 1 cut(s) | 115 |
| BsrFI | RCCGGY | 1 cut(s) | 988 |
| BsrI | ACTGG | 1 cut(s) | 67 |
| BssAI | RCCGGY | 1 cut(s) | 988 |
| BssECI | CCNNGG | 3 cut(s) | 217, 763, 999 |
| BssMI | GATC | 3 cut(s) | 115, 798, 978 |
| BssT1I | CCWWGG | 2 cut(s) | 763, 999 |
| Bst4CI | ACNGT | 1 cut(s) | 151 |
| Bst6I | CTCTTC | 6 cut(s) | 165, 201, 312, 552, 564, 1091 |
| BstC8I | GCNNGC | 2 cut(s) | 303, 741 |
| BstDEI | CTNAG | 8 cut(s) | 91, 197, 434, 536, 735, 877, 1006, 1086 |
| BstDSI | CCRYGG | 1 cut(s) | 999 |
| BstF5I | GGATG | 3 cut(s) | 759, 814, 1153 |
| BstKTI | GATC | 3 cut(s) | 118, 801, 981 |
| BstMAI | GTCTC | 3 cut(s) | 157, 1081, 1093 |
| BstMBI | GATC | 3 cut(s) | 115, 798, 978 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 410 |
| BstNSI | RCATGY | 2 cut(s) | 305, 660 |
| BstSCI | CCNGG | 2 cut(s) | 827, 1127 |
| BstSFI | CTRYAG | 2 cut(s) | 335, 1071 |
| BstV1I | GCAGC | 1 cut(s) | 92 |
| Bsu15I | ATCGAT | 1 cut(s) | 456 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1086 |
| BsuRI | GGCC | 1 cut(s) | 1022 |
| BsuTUI | ATCGAT | 1 cut(s) | 456 |
| BtgI | CCRYGG | 1 cut(s) | 999 |
| BtsCI | GGATG | 3 cut(s) | 759, 814, 1153 |
| BtsIMutI | CAGTG | 2 cut(s) | 60, 620 |
| Cac8I | GCNNGC | 2 cut(s) | 303, 741 |
| Cfr10I | RCCGGY | 1 cut(s) | 988 |
| Cfr13I | GGNCC | 1 cut(s) | 1020 |
| ClaI | ATCGAT | 1 cut(s) | 456 |
| CseI | GACGC | 1 cut(s) | 782 |
| Csp6I | GTAC | 3 cut(s) | 820, 866, 1132 |
| CspAI | ACCGGT | 1 cut(s) | 988 |
| CviAII | CATG | 4 cut(s) | 302, 657, 905, 1000 |
| CviQI | GTAC | 3 cut(s) | 820, 866, 1132 |
| DdeI | CTNAG | 8 cut(s) | 91, 197, 434, 536, 735, 877, 1006, 1086 |
| DpnI | GATC | 3 cut(s) | 117, 800, 980 |
| DpnII | GATC | 3 cut(s) | 115, 798, 978 |
| DriI | GACNNNNNGTC | 1 cut(s) | 498 |
| Eam1104I | CTCTTC | 6 cut(s) | 165, 201, 312, 552, 564, 1091 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 498 |
| EarI | CTCTTC | 6 cut(s) | 165, 201, 312, 552, 564, 1091 |
| Eco130I | CCWWGG | 2 cut(s) | 763, 999 |
| Eco57I | CTGAAG | 1 cut(s) | 986 |
| Eco81I | CCTNAGG | 1 cut(s) | 1086 |
| EcoT14I | CCWWGG | 2 cut(s) | 763, 999 |
| EcoT22I | ATGCAT | 1 cut(s) | 658 |
| ErhI | CCWWGG | 2 cut(s) | 763, 999 |
| Esp3I | CGTCTC | 1 cut(s) | 157 |
| FaeI | CATG | 4 cut(s) | 305, 660, 908, 1003 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 180, 212, 839, 871 |
| FatI | CATG | 4 cut(s) | 301, 656, 904, 999 |
| FbaI | TGATCA | 1 cut(s) | 798 |
| Fnu4HI | GCNGC | 1 cut(s) | 106 |
| FokI | GGATG | 3 cut(s) | 746, 801, 1140 |
| Fsp4HI | GCNGC | 1 cut(s) | 106 |
| GluI | GCNGC | 1 cut(s) | 106 |
| HaeIII | GGCC | 1 cut(s) | 1022 |
| HapII | CCGG | 4 cut(s) | 293, 829, 989, 1128 |
| HgaI | GACGC | 1 cut(s) | 782 |
| Hin1II | CATG | 4 cut(s) | 305, 660, 908, 1003 |
| HincII | GTYRAC | 1 cut(s) | 925 |
| HindII | GTYRAC | 1 cut(s) | 925 |
| HindIII | AAGCTT | 2 cut(s) | 75, 443 |
| HinfI | GANTC | 3 cut(s) | 289, 637, 1038 |
| HpaI | GTTAAC | 1 cut(s) | 925 |
| HpaII | CCGG | 4 cut(s) | 293, 829, 989, 1128 |
| HphI | GGTGA | 3 cut(s) | 808, 973, 1151 |
| Hpy166II | GTNNAC | 2 cut(s) | 822, 925 |
| Hpy188I | TCNGA | 6 cut(s) | 94, 218, 513, 604, 803, 915 |
| Hpy188III | TCNNGA | 4 cut(s) | 592, 680, 791, 956 |
| Hpy8I | GTNNAC | 2 cut(s) | 822, 925 |
| HpyAV | CCTTC | 2 cut(s) | 316, 381 |
| HpyCH4III | ACNGT | 1 cut(s) | 151 |
| HpyCH4IV | ACGT | 1 cut(s) | 897 |
| HpyCH4V | TGCA | 4 cut(s) | 108, 428, 656, 1073 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 410 |
| HpyF3I | CTNAG | 8 cut(s) | 91, 197, 434, 536, 735, 877, 1006, 1086 |
| HpySE526I | ACGT | 1 cut(s) | 897 |
| Hsp92II | CATG | 4 cut(s) | 305, 660, 908, 1003 |
| KpnI | GGTACC | 1 cut(s) | 1135 |
| Ksp22I | TGATCA | 1 cut(s) | 798 |
| KspAI | GTTAAC | 1 cut(s) | 925 |
| Kzo9I | GATC | 3 cut(s) | 115, 798, 978 |
| LguI | GCTCTTC | 1 cut(s) | 165 |
| LmnI | GCTCC | 1 cut(s) | 48 |
| Lsp1109I | GCAGC | 1 cut(s) | 92 |
| LweI | GCATC | 3 cut(s) | 535, 643, 654 |
| MaeII | ACGT | 1 cut(s) | 897 |
| MaeIII | GTNAC | 2 cut(s) | 37, 661 |
| MalI | GATC | 3 cut(s) | 117, 800, 980 |
| MboI | GATC | 3 cut(s) | 115, 798, 978 |
| MluCI | AATT | 8 cut(s) | 48, 191, 267, 281, 407, 579, 1032, 1061 |
| MnlI | CCTC | 6 cut(s) | 100, 212, 618, 787, 1053, 1167 |
| Mph1103I | ATGCAT | 1 cut(s) | 658 |
| MseI | TTAA | 7 cut(s) | 12, 132, 356, 486, 842, 924, 1031 |
| MslI | CAYNNNNRTG | 1 cut(s) | 306 |
| MspI | CCGG | 4 cut(s) | 293, 829, 989, 1128 |
| MspR9I | CCNGG | 2 cut(s) | 829, 1129 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 410 |
| NciI | CCSGG | 2 cut(s) | 829, 1129 |
| NcoI | CCATGG | 1 cut(s) | 999 |
| NdeII | GATC | 3 cut(s) | 115, 798, 978 |
| NlaIII | CATG | 4 cut(s) | 305, 660, 908, 1003 |
| NlaIV | GGNNCC | 2 cut(s) | 1021, 1133 |
| NmuCI | GTSAC | 1 cut(s) | 661 |
| NsiI | ATGCAT | 1 cut(s) | 658 |
| NspI | RCATGY | 2 cut(s) | 305, 660 |
| PaeI | GCATGC | 1 cut(s) | 305 |
| PciSI | GCTCTTC | 1 cut(s) | 165 |
| PfeI | GAWTC | 3 cut(s) | 289, 637, 1038 |
| PinAI | ACCGGT | 1 cut(s) | 988 |
| PkrI | GCNGC | 1 cut(s) | 107 |
| PspN4I | GGNNCC | 2 cut(s) | 1021, 1133 |
| PspPI | GGNCC | 1 cut(s) | 1020 |
| PstI | CTGCAG | 1 cut(s) | 1075 |
| RsaI | GTAC | 3 cut(s) | 821, 867, 1133 |
| RsaNI | GTAC | 3 cut(s) | 820, 866, 1132 |
| RseI | CAYNNNNRTG | 1 cut(s) | 306 |
| SapI | GCTCTTC | 1 cut(s) | 165 |
| SaqAI | TTAA | 7 cut(s) | 12, 132, 356, 486, 842, 924, 1031 |
| SatI | GCNGC | 1 cut(s) | 106 |
| Sau3AI | GATC | 3 cut(s) | 115, 798, 978 |
| Sau96I | GGNCC | 1 cut(s) | 1020 |
| ScrFI | CCNGG | 2 cut(s) | 829, 1129 |
| SfaNI | GCATC | 3 cut(s) | 535, 643, 654 |
| SfcI | CTRYAG | 2 cut(s) | 335, 1071 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 306 |
| SmlI | CTYRAG | 2 cut(s) | 791, 954 |
| SmoI | CTYRAG | 2 cut(s) | 791, 954 |
| SphI | GCATGC | 1 cut(s) | 305 |
| Sse9I | AATT | 8 cut(s) | 48, 191, 267, 281, 407, 579, 1032, 1061 |
| SsiI | CCGC | 1 cut(s) | 1135 |
| StyD4I | CCNGG | 2 cut(s) | 827, 1127 |
| StyI | CCWWGG | 2 cut(s) | 763, 999 |
| TaaI | ACNGT | 1 cut(s) | 151 |
| TaiI | ACGT | 1 cut(s) | 900 |
| TaqI | TCGA | 5 cut(s) | 393, 456, 572, 681, 717 |
| TasI | AATT | 8 cut(s) | 48, 191, 267, 281, 407, 579, 1032, 1061 |
| TatI | WGTACW | 1 cut(s) | 865 |
| TfiI | GAWTC | 3 cut(s) | 289, 637, 1038 |
| Tru1I | TTAA | 7 cut(s) | 12, 132, 356, 486, 842, 924, 1031 |
| Tru9I | TTAA | 7 cut(s) | 12, 132, 356, 486, 842, 924, 1031 |
| TscAI | CASTG | 2 cut(s) | 67, 627 |
| TseFI | GTSAC | 1 cut(s) | 661 |
| TseI | GCWGC | 1 cut(s) | 105 |
| Tsp45I | GTSAC | 1 cut(s) | 661 |
| TspDTI | ATGAA | 6 cut(s) | 45, 345, 539, 590, 768, 1042 |
| TspGWI | ACGGA | 1 cut(s) | 807 |
| TspRI | CASTG | 2 cut(s) | 67, 627 |
| XceI | RCATGY | 2 cut(s) | 305, 660 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 562 |
| Zsp2I | ATGCAT | 1 cut(s) | 658 |