Rroxscaffold_5G00344890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0009584
Physical Location & Seq
Reverse (-)
15051162 .. 15059316
8155 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00344890.1

Sequence Viewer

Length: 957 bp
ATGGCAGCCTCCATGCTTTTCGTCTTCTCCATATTCTCAGCCCTCTTATTCAACGGAATCACGGCAGAGCCACCGCTTCTGAACGACGGCTCTCCGGAGGTTGCAGATTCGCCGATAAGACTCCAACTCCAACTTCGGTTGCTGGAGACCAAGGTTTACCTTCTAGAATCAAGCATTGATGAGAAAAACCGTGAACTGAGGAAAAAGGATGAAAAAATTAGGCAGATGGAGGAGATTATTCAAGGGAAATCAAACAGCAATGCATTTTTCCAAAGTGGGACAGAGGCTGTGCAGGGAAGAGAATTTTCAGATGCTATGCAATTCACAGATGAGTTACGTGAGAAGAATCCTGAGGAGCTAGTGAATCAGGTTATTGAGGAAATCATATTGCAGAATAAGAAAAAAGATGATCTGGAAGCCCAAGTAAGGGTAGCTGAGCAAAAAATCCAGGAATTGAAATTAAAAGCAGAAGATGTTTTGTATAAGACATGTAGCTTTTCAAATGTCTCTCCTGTGAGTCCTCTTTCTCTAGCTTTGGAAGTAAATAATAACAGAAGATCAGAGTTTGCAAAACTGCATGCTCTTCAAGGGGCATTAGAAATGAAAGCTCAGGTTAATAGTTCGGCTCAGCTCAGCATTGACACAATCAAATCCGCACCAAAAGTTGGTGAAGATAGTGACAAGGATTCGTCTGAAAAATCAGAAAGGGTTCACACAGAGGAACATTCTAAGGATCTAACCCAAAGGAACACGAGTTACCTCCTTGAATTACCAATCGCATGTTGGGTGGGTGCGTGGAGCTCAAATAGTTGTGTTCAATATGCAGGTGGGGTGGGGAGTTTATCAGACGTGGAGGAACTTCAACATCTTAATGCCTGGCTTAATGAAGTTAAAACTACTGTTAAAAATGGTGCTGTAGATGTGTACCGAAAATGGAGCATGGTCAACCAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

318

Amino Acids

35.71

Weight (kDa)

5.03

Isoelectric Point (pI)

44.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 815
Acc36I ACCTGC 1 cut(s) 815
AccB7I CCANNNNNTGG 1 cut(s) 665
AccIII TCCGGA 1 cut(s) 94
AciI CCGC 2 cut(s) 74, 654
AclWI GGATC 1 cut(s) 741
AcsI RAATTY 1 cut(s) 302
AfaI GTAC 1 cut(s) 926
AfiI CCNNNNNNNGG 3 cut(s) 426, 427, 665
AflIII ACRYGT 1 cut(s) 488
AgsI TTSAA 8 cut(s) 52, 242, 457, 501, 587, 767, 818, 863
AjiI CACGTC 1 cut(s) 850
AjnI CCWGG 2 cut(s) 447, 875
AjuI GAANNNNNNNTTGG 2 cut(s) 117, 149
AluBI AGCT 7 cut(s) 358, 434, 495, 533, 608, 631, 801
AluI AGCT 7 cut(s) 358, 434, 495, 533, 608, 631, 801
Alw21I GWGCWC 1 cut(s) 803
Alw26I GTCTC 2 cut(s) 140, 511
AlwI GGATC 1 cut(s) 741
AlwNI CAGNNNCTG 1 cut(s) 287
Aor13HI TCCGGA 1 cut(s) 94
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 1 cut(s) 302
Asp700I GAANNNNTTC 1 cut(s) 708
AsuHPI GGTGA 1 cut(s) 680
AxyI CCTNAGG 1 cut(s) 351
BanII GRGCYC 1 cut(s) 803
BauI CACGAG 1 cut(s) 751
BbsI GAAGAC 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 803
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 220
BceAI ACGGC 2 cut(s) 78, 103
BciT130I CCWGG 2 cut(s) 449, 877
BcoDI GTCTC 2 cut(s) 140, 511
BfaI CTAG 3 cut(s) 164, 359, 530
BfmI CTRYAG 1 cut(s) 915
BfuAI ACCTGC 1 cut(s) 815
BisI GCNGC 1 cut(s) 6
BlpI GCTNAGC 3 cut(s) 435, 627, 632
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 449, 877
BmgBI CACGTC 1 cut(s) 850
BmrFI CCNGG 2 cut(s) 449, 877
BmsI GCATC 1 cut(s) 301
BpiI GAAGAC 1 cut(s) 16
BpmI CTGGAG 1 cut(s) 164
Bpu10I CCTNAGC 1 cut(s) 609
Bpu1102I GCTNAGC 3 cut(s) 435, 627, 632
BsaAI YACGTR 1 cut(s) 338
BsaI GGTCTC 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 150
BsaWI WCCGGW 1 cut(s) 94
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 3 cut(s) 426, 427, 665
Bse21I CCTNAGG 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 265
BseAI TCCGGA 1 cut(s) 94
BseBI CCWGG 2 cut(s) 449, 877
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 3 cut(s) 426, 427, 665
BseMI GCAATG 1 cut(s) 265
BseMII CTCAG 7 cut(s) 51, 188, 342, 426, 623, 641, 646
BseRI GAGGAG 2 cut(s) 245, 368
BseXI GCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 311
BsiHKAI GWGCWC 1 cut(s) 803
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 3 cut(s) 426, 427, 665
BsmAI GTCTC 2 cut(s) 140, 511
BsmFI GGGAC 1 cut(s) 292
Bso31I GGTCTC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 803
Bsp13I TCCGGA 1 cut(s) 94
Bsp143I GATC 3 cut(s) 409, 557, 733
Bsp1720I GCTNAGC 3 cut(s) 435, 627, 632
BspACI CCGC 2 cut(s) 74, 654
BspCNI CTCAG 7 cut(s) 50, 189, 343, 427, 622, 640, 645
BspEI TCCGGA 1 cut(s) 94
BspMI ACCTGC 1 cut(s) 815
BspPI GGATC 1 cut(s) 741
BspQI GCTCTTC 1 cut(s) 588
BspTNI GGTCTC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 3 cut(s) 409, 557, 733
BssSI CACGAG 1 cut(s) 751
BssT1I CCWWGG 1 cut(s) 150
Bst2BI CACGAG 1 cut(s) 751
Bst2UI CCWGG 2 cut(s) 449, 877
Bst4CI ACNGT 2 cut(s) 191, 901
Bst6I CTCTTC 2 cut(s) 292, 588
BstBAI YACGTR 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 579
BstDEI CTNAG 8 cut(s) 37, 197, 351, 435, 609, 627, 632, 729
BstF5I GGATG 1 cut(s) 214
BstKTI GATC 3 cut(s) 412, 560, 736
BstMAI GTCTC 2 cut(s) 140, 511
BstMBI GATC 3 cut(s) 409, 557, 733
BstNI CCWGG 2 cut(s) 449, 877
BstNSI RCATGY 3 cut(s) 492, 581, 783
BstSCI CCNGG 2 cut(s) 447, 875
BstSFI CTRYAG 1 cut(s) 915
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 733
BstYI RGATCY 1 cut(s) 733
Bsu36I CCTNAGG 1 cut(s) 351
BtrI CACGTC 1 cut(s) 850
BtsCI GGATG 1 cut(s) 214
BveI ACCTGC 1 cut(s) 815
Cac8I GCNNGC 1 cut(s) 579
CaiI CAGNNNCTG 1 cut(s) 287
Csp6I GTAC 1 cut(s) 925
CviAII CATG 6 cut(s) 13, 489, 578, 780, 940, 954
CviQI GTAC 1 cut(s) 925
DdeI CTNAG 8 cut(s) 37, 197, 351, 435, 609, 627, 632, 729
DpnI GATC 3 cut(s) 411, 559, 735
DpnII GATC 3 cut(s) 409, 557, 733
Eam1104I CTCTTC 2 cut(s) 292, 588
EarI CTCTTC 2 cut(s) 292, 588
Ecl136II GAGCTC 1 cut(s) 801
Eco130I CCWWGG 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 803
Eco31I GGTCTC 1 cut(s) 140
Eco53kI GAGCTC 1 cut(s) 801
Eco81I CCTNAGG 1 cut(s) 351
EcoICRI GAGCTC 1 cut(s) 801
EcoRII CCWGG 2 cut(s) 447, 875
EcoT14I CCWWGG 1 cut(s) 150
EcoT22I ATGCAT 1 cut(s) 265
EcoT38I GRGCYC 1 cut(s) 803
ErhI CCWWGG 1 cut(s) 150
FaeI CATG 6 cut(s) 16, 492, 581, 783, 943, 957
FaqI GGGAC 1 cut(s) 292
FatI CATG 6 cut(s) 12, 488, 577, 779, 939, 953
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 221
FriOI GRGCYC 1 cut(s) 803
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 3 cut(s) 164, 359, 530
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 164
HapII CCGG 1 cut(s) 95
Hin1II CATG 6 cut(s) 16, 492, 581, 783, 943, 957
HincII GTYRAC 1 cut(s) 946
HindII GTYRAC 1 cut(s) 946
HinfI GANTC 8 cut(s) 57, 107, 120, 167, 346, 364, 517, 686
HpaII CCGG 1 cut(s) 95
HphI GGTGA 1 cut(s) 680
Hpy166II GTNNAC 5 cut(s) 157, 194, 712, 925, 946
Hpy188I TCNGA 6 cut(s) 81, 310, 562, 694, 703, 847
Hpy188III TCNNGA 4 cut(s) 95, 164, 350, 413
Hpy8I GTNNAC 5 cut(s) 157, 194, 712, 925, 946
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 2 cut(s) 191, 901
HpyCH4IV ACGT 2 cut(s) 337, 849
HpyCH4V TGCA 8 cut(s) 104, 263, 292, 319, 391, 569, 577, 824
HpyF3I CTNAG 8 cut(s) 37, 197, 351, 435, 609, 627, 632, 729
HpySE526I ACGT 2 cut(s) 337, 849
Hsp92II CATG 6 cut(s) 16, 492, 581, 783, 943, 957
Kpn2I TCCGGA 1 cut(s) 94
Kzo9I GATC 3 cut(s) 409, 557, 733
LguI GCTCTTC 1 cut(s) 588
LmnI GCTCC 3 cut(s) 355, 798, 936
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 301
MaeI CTAG 3 cut(s) 164, 359, 530
MaeII ACGT 2 cut(s) 337, 849
MaeIII GTNAC 3 cut(s) 333, 677, 755
MalI GATC 3 cut(s) 411, 559, 735
MboI GATC 3 cut(s) 409, 557, 733
MboII GAAGA 7 cut(s) 16, 309, 355, 482, 567, 575, 683
MflI RGATCY 1 cut(s) 733
MhlI GDGCHC 1 cut(s) 803
MluCI AATT 6 cut(s) 216, 302, 320, 452, 458, 767
MlyI GAGTC 2 cut(s) 114, 526
MmeI TCCRAC 2 cut(s) 148, 154
Mph1103I ATGCAT 1 cut(s) 265
MroI TCCGGA 1 cut(s) 94
MroXI GAANNNNTTC 1 cut(s) 708
MseI TTAA 6 cut(s) 461, 615, 870, 882, 891, 903
MslI CAYNNNNRTG 1 cut(s) 870
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 2 cut(s) 449, 877
MvaI CCWGG 2 cut(s) 449, 877
NdeII GATC 3 cut(s) 409, 557, 733
NlaIII CATG 6 cut(s) 16, 492, 581, 783, 943, 957
NmuCI GTSAC 1 cut(s) 677
NsiI ATGCAT 1 cut(s) 265
NspI RCATGY 3 cut(s) 492, 581, 783
PaeI GCATGC 1 cut(s) 581
PaqCI CACCTGC 1 cut(s) 815
PciI ACATGT 1 cut(s) 488
PciSI GCTCTTC 1 cut(s) 588
PdmI GAANNNNTTC 1 cut(s) 708
PfeI GAWTC 6 cut(s) 57, 107, 167, 346, 364, 686
PflMI CCANNNNNTGG 1 cut(s) 665
PfoI TCCNGGA 1 cut(s) 447
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 2 cut(s) 114, 525
PpsI GAGTC 2 cut(s) 114, 525
Ppu21I YACGTR 1 cut(s) 338
PscI ACATGT 1 cut(s) 488
Psp124BI GAGCTC 1 cut(s) 803
Psp6I CCWGG 2 cut(s) 447, 875
PspGI CCWGG 2 cut(s) 447, 875
PsrI GAACNNNNNNTAC 2 cut(s) 740, 772
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 1 cut(s) 733
RsaI GTAC 1 cut(s) 926
RsaNI GTAC 1 cut(s) 925
RseI CAYNNNNRTG 1 cut(s) 870
SacI GAGCTC 1 cut(s) 803
SapI GCTCTTC 1 cut(s) 588
SaqAI TTAA 6 cut(s) 461, 615, 870, 882, 891, 903
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 409, 557, 733
SchI GAGTC 2 cut(s) 114, 526
ScrFI CCNGG 2 cut(s) 449, 877
SduI GDGCHC 1 cut(s) 803
SfaNI GCATC 1 cut(s) 301
SfcI CTRYAG 1 cut(s) 915
SmiMI CAYNNNNRTG 1 cut(s) 870
SphI GCATGC 1 cut(s) 581
Sse9I AATT 6 cut(s) 216, 302, 320, 452, 458, 767
SsiI CCGC 2 cut(s) 74, 654
SspMI CTAG 3 cut(s) 164, 359, 530
SstI GAGCTC 1 cut(s) 803
StyD4I CCNGG 2 cut(s) 447, 875
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 2 cut(s) 191, 901
TaiI ACGT 2 cut(s) 340, 852
TasI AATT 6 cut(s) 216, 302, 320, 452, 458, 767
TfiI GAWTC 6 cut(s) 57, 107, 167, 346, 364, 686
Tru1I TTAA 6 cut(s) 461, 615, 870, 882, 891, 903
Tru9I TTAA 6 cut(s) 461, 615, 870, 882, 891, 903
TseFI GTSAC 1 cut(s) 677
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 677
TspDTI ATGAA 3 cut(s) 225, 617, 900
TspGWI ACGGA 1 cut(s) 69
Van91I CCANNNNNTGG 1 cut(s) 665
XapI RAATTY 1 cut(s) 302
XbaI TCTAGA 1 cut(s) 163
XceI RCATGY 3 cut(s) 492, 581, 783
XcmI CCANNNNNNNNNTGG 1 cut(s) 780
XmnI GAANNNNTTC 1 cut(s) 708
XspI CTAG 3 cut(s) 164, 359, 530
Zsp2I ATGCAT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.