Rorug04G0021900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0009584
Physical Location & Seq
Forward (+)
3144670 .. 3145386
717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0021900.1

Sequence Viewer

Length: 717 bp
ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAGGCGGAGCAGGTGGACTCCCACTACAGATCATATAAGAATCCTCAAGGAGCTTTTCTACAACAAGGGAGTTAGGTCCCCAACTATAGAGCAGGTTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTTTTGGTTCGTGAACCAAAGGGCTCGGGAGAAGCAGAAGAAGAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGGCTTGTTGGTGATGACAATGTTACCAATTCATTTGCACCTGCTTCTGCTTCTGCTTCTTCTGCTGGTGTAATGATTGCTTTTAACGGGCAGATGGGGAACTATGGCGGTTATGGATCCATGAACATGGAGAAGAGTGCTAGGGATTGTTCAATCTCAGTTGGAGGGGGAACTAGTTCTACTTTCTTTGACATGAATGTAGAACAAACTTTCATGGAACAAAGAGGAGAAGATCACCAGGAGATTGAAACCCTTTCACTGTTTCCCGTGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTCACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCTGGAGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

26.17

Weight (kDa)

7.71

Isoelectric Point (pI)

55.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 89 1.2e-08 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 78, 361
Acc36I ACCTGC 3 cut(s) 78, 160, 361
AciI CCGC 4 cut(s) 82, 420, 633, 712
AclWI GGATC 3 cut(s) 188, 423, 436
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 584
AgsI TTSAA 3 cut(s) 220, 465, 560
AhlI ACTAGT 1 cut(s) 485
AjnI CCWGG 1 cut(s) 549
AleI CACNNNNGTG 1 cut(s) 642
AluBI AGCT 4 cut(s) 130, 193, 667, 692
AluI AGCT 4 cut(s) 130, 193, 667, 692
Alw21I GWGCWC 1 cut(s) 669
Alw26I GTCTC 1 cut(s) 191
AlwI GGATC 3 cut(s) 188, 423, 436
Ama87I CYCGRG 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 487
AspS9I GGNCC 2 cut(s) 153, 276
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 3 cut(s) 335, 539, 599
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 2 cut(s) 153, 276
BaeGI GKGCMC 1 cut(s) 300
BamHI GGATCC 1 cut(s) 428
BanII GRGCYC 2 cut(s) 256, 669
BbsI GAAGAC 1 cut(s) 617
Bbv12I GWGCWC 1 cut(s) 669
BbvI GCAGC 1 cut(s) 62
BccI CCATC 3 cut(s) 26, 400, 617
BceAI ACGGC 1 cut(s) 220
BciT130I CCWGG 1 cut(s) 551
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 191
BcuI ACTAGT 1 cut(s) 485
BfaI CTAG 2 cut(s) 453, 486
BfmI CTRYAG 2 cut(s) 102, 162
BfuAI ACCTGC 3 cut(s) 78, 160, 361
BisI GCNGC 2 cut(s) 51, 712
BlpI GCTNAGC 1 cut(s) 668
BlsI GCNGC 2 cut(s) 52, 713
Bme1390I CCNGG 2 cut(s) 55, 551
Bme18I GGWCC 2 cut(s) 153, 276
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 153, 276
BmiI GGNNCC 4 cut(s) 6, 155, 430, 710
BmrFI CCNGG 2 cut(s) 55, 551
BpiI GAAGAC 1 cut(s) 617
BpmI CTGGAG 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 668
BpuEI CTTGAG 2 cut(s) 107, 683
BpuMI CCSGG 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 584
BseBI CCWGG 1 cut(s) 551
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 37, 292
BseLI CCNNNNNNNGG 1 cut(s) 584
BseMII CTCAG 2 cut(s) 483, 682
BseRI GAGGAG 1 cut(s) 552
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 669
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 584
BsmAI GTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 139
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 3 cut(s) 256, 300, 669
Bsp143I GATC 6 cut(s) 106, 180, 210, 308, 428, 544
Bsp1720I GCTNAGC 1 cut(s) 668
BspACI CCGC 4 cut(s) 82, 420, 633, 712
BspCNI CTCAG 2 cut(s) 482, 681
BspLI GGNNCC 4 cut(s) 6, 155, 430, 710
BspMI ACCTGC 3 cut(s) 78, 160, 361
BspPI GGATC 3 cut(s) 188, 423, 436
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 6 cut(s) 106, 180, 210, 308, 428, 544
Bst2UI CCWGG 1 cut(s) 551
Bst4CI ACNGT 2 cut(s) 573, 641
Bst6I CTCTTC 2 cut(s) 266, 440
BstDEI CTNAG 2 cut(s) 469, 668
BstF5I GGATG 2 cut(s) 37, 292
BstKTI GATC 6 cut(s) 109, 183, 213, 311, 431, 547
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 6 cut(s) 106, 180, 210, 308, 428, 544
BstMWI GCNNNNNNNGC 3 cut(s) 79, 374, 678
BstNI CCWGG 1 cut(s) 551
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 2 cut(s) 53, 549
BstSFI CTRYAG 2 cut(s) 102, 162
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 617
BstX2I RGATCY 2 cut(s) 180, 428
BstXI CCANNNNNNTGG 1 cut(s) 439
BstYI RGATCY 2 cut(s) 180, 428
BtsCI GGATG 2 cut(s) 37, 292
BtsIMutI CAGTG 1 cut(s) 569
BveI ACCTGC 3 cut(s) 78, 160, 361
Cfr13I GGNCC 2 cut(s) 153, 276
Csp6I GTAC 1 cut(s) 202
CviAII CATG 9 cut(s) 70, 293, 301, 433, 439, 505, 526, 584, 607
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 2 cut(s) 469, 668
DpnI GATC 6 cut(s) 108, 182, 212, 310, 430, 546
DpnII GATC 6 cut(s) 106, 180, 210, 308, 428, 544
Eam1104I CTCTTC 2 cut(s) 266, 440
EarI CTCTTC 2 cut(s) 266, 440
EciI GGCGGA 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 667
Eco24I GRGCYC 2 cut(s) 256, 669
Eco47I GGWCC 2 cut(s) 153, 276
Eco53kI GAGCTC 1 cut(s) 667
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 667
EcoO109I RGGNCCY 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 549
EcoT38I GRGCYC 2 cut(s) 256, 669
FaeI CATG 9 cut(s) 73, 296, 304, 436, 442, 508, 529, 587, 610
FaqI GGGAC 1 cut(s) 139
FatI CATG 9 cut(s) 69, 292, 300, 432, 438, 504, 525, 583, 606
Fnu4HI GCNGC 2 cut(s) 51, 712
FokI GGATG 2 cut(s) 44, 299
FriOI GRGCYC 2 cut(s) 256, 669
Fsp4HI GCNGC 2 cut(s) 51, 712
FspBI CTAG 2 cut(s) 453, 486
GluI GCNGC 2 cut(s) 51, 712
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 173
HapII CCGG 1 cut(s) 54
Hin1II CATG 9 cut(s) 73, 296, 304, 436, 442, 508, 529, 587, 610
HinfI GANTC 2 cut(s) 94, 117
HpaII CCGG 1 cut(s) 54
HphI GGTGA 3 cut(s) 335, 539, 599
Hpy166II GTNNAC 3 cut(s) 93, 244, 279
Hpy188I TCNGA 3 cut(s) 177, 286, 622
Hpy188III TCNNGA 4 cut(s) 220, 241, 257, 706
Hpy8I GTNNAC 3 cut(s) 93, 244, 279
HpyCH4III ACNGT 2 cut(s) 573, 641
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 304, 350, 583
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 374, 678
HpyF3I CTNAG 2 cut(s) 469, 668
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 9 cut(s) 73, 296, 304, 436, 442, 508, 529, 587, 610
Kzo9I GATC 6 cut(s) 106, 180, 210, 308, 428, 544
LmnI GCTCC 3 cut(s) 84, 127, 708
Lsp1109I GCAGC 1 cut(s) 62
MaeI CTAG 2 cut(s) 453, 486
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 2 cut(s) 334, 635
MalI GATC 6 cut(s) 108, 182, 212, 310, 430, 546
MboI GATC 6 cut(s) 106, 180, 210, 308, 428, 544
MboII GAAGA 6 cut(s) 280, 283, 363, 457, 554, 622
MflI RGATCY 2 cut(s) 180, 428
MhlI GDGCHC 3 cut(s) 256, 300, 669
MluCI AATT 1 cut(s) 340
MlyI GAGTC 1 cut(s) 88
MmeI TCCRAC 1 cut(s) 454
MroXI GAANNNNTTC 1 cut(s) 487
MseI TTAA 1 cut(s) 396
MslI CAYNNNNRTG 2 cut(s) 437, 642
MspA1I CMGCKG 2 cut(s) 193, 714
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 2 cut(s) 55, 551
MvaI CCWGG 1 cut(s) 551
MwoI GCNNNNNNNGC 3 cut(s) 79, 374, 678
NciI CCSGG 1 cut(s) 55
NdeII GATC 6 cut(s) 106, 180, 210, 308, 428, 544
NlaIII CATG 9 cut(s) 73, 296, 304, 436, 442, 508, 529, 587, 610
NlaIV GGNNCC 4 cut(s) 6, 155, 430, 710
NmuCI GTSAC 1 cut(s) 635
NspI RCATGY 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 642
PaqCI CACCTGC 2 cut(s) 78, 361
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 487
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 2 cut(s) 52, 713
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PpuMI RGGWCCY 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 669
Psp5II RGGWCCY 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 549
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 1 cut(s) 549
PspN4I GGNNCC 4 cut(s) 6, 155, 430, 710
PspPI GGNCC 2 cut(s) 153, 276
PspPPI RGGWCCY 1 cut(s) 153
PsrI GAACNNNNNNTAC 2 cut(s) 475, 507
PsuI RGATCY 2 cut(s) 180, 428
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 2 cut(s) 437, 642
SacI GAGCTC 1 cut(s) 669
SaqAI TTAA 1 cut(s) 396
SatI GCNGC 2 cut(s) 51, 712
Sau3AI GATC 6 cut(s) 106, 180, 210, 308, 428, 544
Sau96I GGNCC 2 cut(s) 153, 276
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 2 cut(s) 55, 551
SduI GDGCHC 3 cut(s) 256, 300, 669
SfcI CTRYAG 2 cut(s) 102, 162
SinI GGWCC 2 cut(s) 153, 276
SmiMI CAYNNNNRTG 2 cut(s) 437, 642
SmlI CTYRAG 2 cut(s) 122, 662
SmoI CTYRAG 2 cut(s) 122, 662
SpeI ACTAGT 1 cut(s) 485
Sse9I AATT 1 cut(s) 340
SsiI CCGC 4 cut(s) 82, 420, 633, 712
SspMI CTAG 2 cut(s) 453, 486
SstI GAGCTC 1 cut(s) 669
StyD4I CCNGG 2 cut(s) 53, 549
TaaI ACNGT 2 cut(s) 573, 641
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 213
TasI AATT 1 cut(s) 340
TauI GCSGC 1 cut(s) 714
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 1 cut(s) 396
Tru9I TTAA 1 cut(s) 396
TscAI CASTG 1 cut(s) 576
TseFI GTSAC 1 cut(s) 635
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 635
TspDTI ATGAA 6 cut(s) 281, 333, 449, 514, 521, 623
TspRI CASTG 1 cut(s) 576
VpaK11BI GGWCC 2 cut(s) 153, 276
XceI RCATGY 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 487
XspI CTAG 2 cut(s) 453, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.