RchiOBHm_Chr4g0399971

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0009584
Physical Location & Seq
Reverse (-)
17447005 .. 17462010
15006 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37206

Sequence Viewer

Length: 1215 bp
ATGGCAGCCTCCATGCTTTTCGTCTTCTCCATATTCTCAGTCCTATTATTCAACGGAATCACGGCAGAGCCACCGCTTCTGAACGACGGGTCTCCGGAGGTTGCAGATTCGCCGATAAGACACCAACTCCAACTTCGGTTGCTGGAGACCAAGGTTTACCTTCTAGAATTAAGCATTGATGAGAAAAACCGTGAACTGAGGAAAAAGGATGAAAAAATTAGGCAGATGGAGGAGATTATTCAAGGGAAATCAAACAGCAATGCATTTTTCCAAAGTGAGACAGAGGCTGTCCAGGGAAGAGAATTTTTAGATGCTATGCAATTCACAGATGAGTTACGTGAGAAGAATCCTGAGGAGCTAGTGAATCAGGTTATTGAGGAAATCATATTGCAGAATAAGAAAAAAAATGAACTGGAAGCCCAAGCAAGGGTAGCTGAGCAAAAACTCCAGGGATTGAAATTAAAAGTAAAAGATATCCATGGAGGATGGCTTTCAGTTCTACATTCAGTTGCAGTTCATATAAGCCATTTTCAGTCATACATAGTGACTTACTGGAATGAGTGTGGGAGACCAGCCTTGGATGTGGCAATTGAAAAGGCATTAGAAATGAAAGCTCAGGTTAATATTTTGGCTCAGCTCAGCACTGAAACAATCAAATCTAAATGGATACCAGGTTTGAAGAAACAATCTTTAGAAATTGTAGCCTATCTTGATCCAAATATTCAATTACTCACTGCAAAAACTGTTGATATCTACCATTCGTCAAAGAGTTCTGTAGCACCATTTGTTTTCAAGGCACAAGAAATGGCAAATCCTCACATTCAGGTAGCTAAGAAGTTTACCGAGCCATACATAGCTCAGCTTATGATGGCGATAGATGAGGCTACAATGGTGACAAGAACCCATTTAGCTAACATACACGTTACCTTGAAGCCATATACAAAGCAAGTACTCCACGCATGCAGAAAATTCATCAAATCTGCAACTTTTTACCATCATGAGGTCCAAGAAATGCTCAAAAACAATACGTTGACACAATCACTTGCAACTATCGAACTGGCATGGCTTCTGGCCACTGCTTTACTGGCCCTGCCTGCAGTTCTTATGTTTAAGTTGACTTCTGTTATTTTCAGAAAAAAGGCAAATAAGCGTATTCCTAGATCCTATGCATATCATACATGCCGCAAGCTCAAGCGTGCTCATCCTGACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

404

Amino Acids

46.15

Weight (kDa)

9.18

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 94
AciI CCGC 2 cut(s) 74, 1183
AclWI GGATC 2 cut(s) 707, 1155
AcoI YGGCCR 1 cut(s) 1071
AcsI RAATTY 2 cut(s) 302, 968
AfaI GTAC 1 cut(s) 951
AfiI CCNNNNNNNGG 3 cut(s) 426, 427, 1000
AflIII ACRYGT 1 cut(s) 919
AgsI TTSAA 8 cut(s) 52, 242, 457, 593, 679, 725, 793, 931
AjnI CCWGG 3 cut(s) 291, 447, 670
AjuI GAANNNNNNNTTGG 2 cut(s) 117, 149
AluBI AGCT 9 cut(s) 358, 434, 614, 637, 830, 857, 862, 911, 1189
AluI AGCT 9 cut(s) 358, 434, 614, 637, 830, 857, 862, 911, 1189
Alw21I GWGCWC 1 cut(s) 1201
Alw26I GTCTC 4 cut(s) 96, 140, 272, 562
AlwI GGATC 2 cut(s) 707, 1155
AlwNI CAGNNNCTG 1 cut(s) 287
Aor13HI TCCGGA 1 cut(s) 94
AoxI GGCC 2 cut(s) 1071, 1086
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 302, 968
AspS9I GGNCC 2 cut(s) 1003, 1087
AsuHPI GGTGA 1 cut(s) 904
AvaII GGWCC 1 cut(s) 1003
AxyI CCTNAGG 1 cut(s) 351
BalI TGGCCA 1 cut(s) 1073
BbsI GAAGAC 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 1201
BbvI GCAGC 1 cut(s) 17
BccI CCATC 4 cut(s) 220, 480, 862, 1002
BceAI ACGGC 1 cut(s) 78
BciT130I CCWGG 3 cut(s) 293, 449, 672
BciVI GTATCC 1 cut(s) 660
BcoDI GTCTC 4 cut(s) 96, 140, 272, 562
BfaI CTAG 3 cut(s) 164, 359, 1158
BfmI CTRYAG 2 cut(s) 774, 1095
BfuI GTATCC 1 cut(s) 660
BisI GCNGC 2 cut(s) 6, 1183
BlpI GCTNAGC 4 cut(s) 435, 633, 638, 858
BlsI GCNGC 2 cut(s) 7, 1184
BmcAI AGTACT 1 cut(s) 951
Bme1390I CCNGG 3 cut(s) 293, 449, 672
Bme18I GGWCC 1 cut(s) 1003
BmgT120I GGNCC 2 cut(s) 1003, 1087
BmrFI CCNGG 3 cut(s) 293, 449, 672
BmsI GCATC 1 cut(s) 301
BpiI GAAGAC 1 cut(s) 16
BpmI CTGGAG 2 cut(s) 164, 431
Bpu10I CCTNAGC 1 cut(s) 615
Bpu1102I GCTNAGC 4 cut(s) 435, 633, 638, 858
BpuEI CTTGAG 1 cut(s) 1175
BsaAI YACGTR 1 cut(s) 338
BsaI GGTCTC 3 cut(s) 96, 140, 562
BsaJI CCNNGG 5 cut(s) 150, 292, 448, 478, 576
BsaWI WCCGGW 1 cut(s) 94
BsaXI ACNNNNNCTCC 2 cut(s) 111, 141
Bsc4I CCNNNNNNNGG 3 cut(s) 426, 427, 1000
Bse1I ACTGG 4 cut(s) 417, 557, 1062, 1089
Bse21I CCTNAGG 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 265
BseAI TCCGGA 1 cut(s) 94
BseBI CCWGG 3 cut(s) 293, 449, 672
BseDI CCNNGG 5 cut(s) 150, 292, 448, 478, 576
BseGI GGATG 4 cut(s) 214, 491, 586, 1201
BseLI CCNNNNNNNGG 3 cut(s) 426, 427, 1000
BseMI GCAATG 1 cut(s) 265
BseMII CTCAG 8 cut(s) 51, 188, 342, 426, 629, 647, 652, 872
BseNI ACTGG 4 cut(s) 417, 557, 1062, 1089
BseRI GAGGAG 2 cut(s) 245, 368
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 2 cut(s) 1073, 1088
BsiHKAI GWGCWC 1 cut(s) 1201
BsiSI CCGG 1 cut(s) 95
BslI CCNNNNNNNGG 3 cut(s) 426, 427, 1000
BsmAI GTCTC 4 cut(s) 96, 140, 272, 562
BsnI GGCC 2 cut(s) 1073, 1088
Bso31I GGTCTC 3 cut(s) 96, 140, 562
Bsp1286I GDGCHC 1 cut(s) 1201
Bsp13I TCCGGA 1 cut(s) 94
Bsp143I GATC 2 cut(s) 712, 1160
Bsp1720I GCTNAGC 4 cut(s) 435, 633, 638, 858
Bsp19I CCATGG 1 cut(s) 478
BspACI CCGC 2 cut(s) 74, 1183
BspANI GGCC 2 cut(s) 1073, 1088
BspCNI CTCAG 8 cut(s) 50, 189, 343, 427, 628, 646, 651, 871
BspEI TCCGGA 1 cut(s) 94
BspHI TCATGA 1 cut(s) 997
BspMAI CTGCAG 1 cut(s) 1099
BspPI GGATC 2 cut(s) 707, 1155
BspTNI GGTCTC 3 cut(s) 96, 140, 562
BsrDI GCAATG 1 cut(s) 265
BsrI ACTGG 4 cut(s) 417, 557, 1062, 1089
BssECI CCNNGG 5 cut(s) 150, 292, 448, 478, 576
BssMI GATC 2 cut(s) 712, 1160
BssT1I CCWWGG 3 cut(s) 150, 478, 576
Bst2UI CCWGG 3 cut(s) 293, 449, 672
Bst4CI ACNGT 2 cut(s) 191, 745
Bst6I CTCTTC 1 cut(s) 292
BstBAI YACGTR 1 cut(s) 338
BstC8I GCNNGC 4 cut(s) 961, 1095, 1187, 1197
BstDEI CTNAG 9 cut(s) 37, 197, 351, 435, 615, 633, 638, 831, 858
BstDSI CCRYGG 1 cut(s) 478
BstF5I GGATG 4 cut(s) 214, 491, 586, 1201
BstKTI GATC 2 cut(s) 715, 1163
BstMAI GTCTC 4 cut(s) 96, 140, 272, 562
BstMBI GATC 2 cut(s) 712, 1160
BstMWI GCNNNNNNNGC 3 cut(s) 431, 1085, 1094
BstNI CCWGG 3 cut(s) 293, 449, 672
BstNSI RCATGY 2 cut(s) 963, 1182
BstSCI CCNGG 3 cut(s) 291, 447, 670
BstSFI CTRYAG 2 cut(s) 774, 1095
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 1160
BstYI RGATCY 1 cut(s) 1160
Bsu36I CCTNAGG 1 cut(s) 351
BsuI GTATCC 1 cut(s) 660
BsuRI GGCC 2 cut(s) 1073, 1088
BtgI CCRYGG 1 cut(s) 478
BtsCI GGATG 4 cut(s) 214, 491, 586, 1201
BtsI GCAGTG 2 cut(s) 732, 1074
BtsIMutI CAGTG 3 cut(s) 642, 732, 1074
Cac8I GCNNGC 4 cut(s) 961, 1095, 1187, 1197
CaiI CAGNNNCTG 1 cut(s) 287
CciI TCATGA 1 cut(s) 997
Cfr13I GGNCC 2 cut(s) 1003, 1087
CsiI ACCWGGT 1 cut(s) 670
Csp6I GTAC 1 cut(s) 950
CviAII CATG 6 cut(s) 13, 479, 960, 998, 1062, 1179
CviQI GTAC 1 cut(s) 950
DdeI CTNAG 9 cut(s) 37, 197, 351, 435, 615, 633, 638, 831, 858
DpnI GATC 2 cut(s) 714, 1162
DpnII GATC 2 cut(s) 712, 1160
EaeI YGGCCR 1 cut(s) 1071
Eam1104I CTCTTC 1 cut(s) 292
EarI CTCTTC 1 cut(s) 292
Eco130I CCWWGG 3 cut(s) 150, 478, 576
Eco31I GGTCTC 3 cut(s) 96, 140, 562
Eco32I GATATC 2 cut(s) 475, 751
Eco47I GGWCC 1 cut(s) 1003
Eco81I CCTNAGG 1 cut(s) 351
EcoRII CCWGG 3 cut(s) 291, 447, 670
EcoRV GATATC 2 cut(s) 475, 751
EcoT14I CCWWGG 3 cut(s) 150, 478, 576
EcoT22I ATGCAT 2 cut(s) 265, 1171
ErhI CCWWGG 3 cut(s) 150, 478, 576
FaeI CATG 6 cut(s) 16, 482, 963, 1001, 1065, 1182
FatI CATG 6 cut(s) 12, 478, 959, 997, 1061, 1178
Fnu4HI GCNGC 2 cut(s) 6, 1183
FokI GGATG 4 cut(s) 221, 498, 593, 1188
Fsp4HI GCNGC 2 cut(s) 6, 1183
FspBI CTAG 3 cut(s) 164, 359, 1158
GluI GCNGC 2 cut(s) 6, 1183
GsuI CTGGAG 2 cut(s) 164, 431
HaeIII GGCC 2 cut(s) 1073, 1088
HapII CCGG 1 cut(s) 95
Hin1II CATG 6 cut(s) 16, 482, 963, 1001, 1065, 1182
HincII GTYRAC 2 cut(s) 1032, 1116
HindII GTYRAC 2 cut(s) 1032, 1116
HinfI GANTC 4 cut(s) 57, 107, 346, 364
HpaII CCGG 1 cut(s) 95
HphI GGTGA 1 cut(s) 904
Hpy166II GTNNAC 5 cut(s) 157, 194, 840, 1032, 1116
Hpy188I TCNGA 2 cut(s) 81, 1133
Hpy188III TCNNGA 6 cut(s) 95, 164, 350, 710, 998, 1205
Hpy8I GTNNAC 5 cut(s) 157, 194, 840, 1032, 1116
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 2 cut(s) 191, 745
HpyCH4IV ACGT 3 cut(s) 337, 921, 1028
HpyF10VI GCNNNNNNNGC 3 cut(s) 431, 1085, 1094
HpyF3I CTNAG 9 cut(s) 37, 197, 351, 435, 615, 633, 638, 831, 858
HpySE526I ACGT 3 cut(s) 337, 921, 1028
Hsp92II CATG 6 cut(s) 16, 482, 963, 1001, 1065, 1182
Kpn2I TCCGGA 1 cut(s) 94
Kzo9I GATC 2 cut(s) 712, 1160
LmnI GCTCC 1 cut(s) 355
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 301
MabI ACCWGGT 1 cut(s) 670
MaeI CTAG 3 cut(s) 164, 359, 1158
MaeII ACGT 3 cut(s) 337, 921, 1028
MaeIII GTNAC 4 cut(s) 333, 544, 892, 922
MalI GATC 2 cut(s) 714, 1162
MboI GATC 2 cut(s) 712, 1160
MboII GAAGA 4 cut(s) 16, 309, 355, 691
MfeI CAATTG 1 cut(s) 588
MflI RGATCY 1 cut(s) 1160
MhlI GDGCHC 1 cut(s) 1201
MlsI TGGCCA 1 cut(s) 1073
MluCI AATT 9 cut(s) 167, 216, 302, 320, 458, 588, 696, 725, 968
MluNI TGGCCA 1 cut(s) 1073
MmeI TCCRAC 1 cut(s) 154
Mox20I TGGCCA 1 cut(s) 1073
Mph1103I ATGCAT 2 cut(s) 265, 1171
MroI TCCGGA 1 cut(s) 94
MscI TGGCCA 1 cut(s) 1073
MseI TTAA 4 cut(s) 170, 461, 621, 1110
Msp20I TGGCCA 1 cut(s) 1073
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 3 cut(s) 293, 449, 672
MunI CAATTG 1 cut(s) 588
MvaI CCWGG 3 cut(s) 293, 449, 672
MwoI GCNNNNNNNGC 3 cut(s) 431, 1085, 1094
NcoI CCATGG 1 cut(s) 478
NdeII GATC 2 cut(s) 712, 1160
NlaIII CATG 6 cut(s) 16, 482, 963, 1001, 1065, 1182
NmuCI GTSAC 2 cut(s) 544, 892
NsiI ATGCAT 2 cut(s) 265, 1171
NspI RCATGY 2 cut(s) 963, 1182
PaeI GCATGC 1 cut(s) 963
PagI TCATGA 1 cut(s) 997
PfeI GAWTC 4 cut(s) 57, 107, 346, 364
PkrI GCNGC 2 cut(s) 7, 1184
Ppu21I YACGTR 1 cut(s) 338
Psp6I CCWGG 3 cut(s) 291, 447, 670
PspGI CCWGG 3 cut(s) 291, 447, 670
PspPI GGNCC 2 cut(s) 1003, 1087
PstI CTGCAG 1 cut(s) 1099
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 1 cut(s) 1160
RsaI GTAC 1 cut(s) 951
RsaNI GTAC 1 cut(s) 950
SaqAI TTAA 4 cut(s) 170, 461, 621, 1110
SatI GCNGC 2 cut(s) 6, 1183
Sau3AI GATC 2 cut(s) 712, 1160
Sau96I GGNCC 2 cut(s) 1003, 1087
ScaI AGTACT 1 cut(s) 951
ScrFI CCNGG 3 cut(s) 293, 449, 672
SduI GDGCHC 1 cut(s) 1201
SexAI ACCWGGT 1 cut(s) 670
SfaNI GCATC 1 cut(s) 301
SfcI CTRYAG 2 cut(s) 774, 1095
SinI GGWCC 1 cut(s) 1003
SmlI CTYRAG 1 cut(s) 1190
SmoI CTYRAG 1 cut(s) 1190
SphI GCATGC 1 cut(s) 963
Sse9I AATT 9 cut(s) 167, 216, 302, 320, 458, 588, 696, 725, 968
SsiI CCGC 2 cut(s) 74, 1183
SspI AATATT 2 cut(s) 625, 721
SspMI CTAG 3 cut(s) 164, 359, 1158
StyD4I CCNGG 3 cut(s) 291, 447, 670
StyI CCWWGG 3 cut(s) 150, 478, 576
TaaI ACNGT 2 cut(s) 191, 745
TaiI ACGT 3 cut(s) 340, 924, 1031
TaqI TCGA 1 cut(s) 1053
TasI AATT 9 cut(s) 167, 216, 302, 320, 458, 588, 696, 725, 968
TatI WGTACW 1 cut(s) 949
TauI GCSGC 1 cut(s) 1185
TfiI GAWTC 4 cut(s) 57, 107, 346, 364
Tru1I TTAA 4 cut(s) 170, 461, 621, 1110
Tru9I TTAA 4 cut(s) 170, 461, 621, 1110
TscAI CASTG 3 cut(s) 649, 739, 1081
TseFI GTSAC 2 cut(s) 544, 892
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 2 cut(s) 544, 892
TspDTI ATGAA 5 cut(s) 225, 423, 506, 623, 961
TspGWI ACGGA 1 cut(s) 69
TspRI CASTG 3 cut(s) 649, 739, 1081
VpaK11BI GGWCC 1 cut(s) 1003
XapI RAATTY 2 cut(s) 302, 968
XbaI TCTAGA 1 cut(s) 163
XceI RCATGY 2 cut(s) 963, 1182
XcmI CCANNNNNNNNNTGG 1 cut(s) 1081
XspI CTAG 3 cut(s) 164, 359, 1158
ZrmI AGTACT 1 cut(s) 951
Zsp2I ATGCAT 2 cut(s) 265, 1171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.