Rh4BG095500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0009584
Physical Location & Seq
Reverse (-)
16263427 .. 16272753
9327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG095500.1

Sequence Viewer

Length: 327 bp
ATGTCGATTGGAGCCACCTCCAGTGGCCGGCGAGACATGGGCGCAGAACAGCCTCCAAGTCGGCTACAAGACCTTCACAGTGCATCGCCTCTCCGACACTTTGAAAAGCGTCTGCGTTACATTCTTTCTTCAGTGATTGCTCAACTCTTGCCAATGGCAGCCTCCATGCTTTTCGTCTTCTCCATATTCTCAGTCCTATTATTCAACGGAATCACGGCAGAGCCACCGCTTCTGAACGACAGCTCTCCGGAGGTTGCAGATTCCCCGATAAGACTCCAACTCCAACTTCGGTTGCTTGAGACCAAGGTTTACCACTTTACCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.09

Weight (kDa)

8.25

Isoelectric Point (pI)

73.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 247
AciI CCGC 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 25
AcuI CTGAAG 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 27
AgsI TTSAA 2 cut(s) 104, 205
AjuI GAANNNNNNNTTGG 2 cut(s) 270, 302
AluBI AGCT 1 cut(s) 243
AluI AGCT 1 cut(s) 243
Alw26I GTCTC 2 cut(s) 27, 293
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 1 cut(s) 25
ApeKI GCWGC 1 cut(s) 158
AspLEI GCGC 1 cut(s) 44
BbsI GAAGAC 1 cut(s) 169
BbvI GCAGC 1 cut(s) 170
BceAI ACGGC 1 cut(s) 231
BcoDI GTCTC 2 cut(s) 27, 293
BfaI CTAG 1 cut(s) 325
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
BmiI GGNNCC 1 cut(s) 13
BmsI GCATC 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 169
BpmI CTGGAG 1 cut(s) 4
BpuEI CTTGAG 1 cut(s) 317
BsaI GGTCTC 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 303
BsaWI WCCGGW 1 cut(s) 247
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse118I RCCGGY 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 21
BseAI TCCGGA 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 303
BseLI CCNNNNNNNGG 1 cut(s) 27
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 21
BseXI GCAGC 1 cut(s) 170
BshFI GGCC 1 cut(s) 27
BsiSI CCGG 2 cut(s) 28, 248
BslI CCNNNNNNNGG 1 cut(s) 27
BsmAI GTCTC 2 cut(s) 27, 293
BsnI GGCC 1 cut(s) 27
Bso31I GGTCTC 1 cut(s) 293
Bsp13I TCCGGA 1 cut(s) 247
BspACI CCGC 1 cut(s) 227
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 1 cut(s) 203
BspEI TCCGGA 1 cut(s) 247
BspLI GGNNCC 1 cut(s) 13
BspTNI GGTCTC 1 cut(s) 293
BsrFI RCCGGY 1 cut(s) 27
BsrI ACTGG 1 cut(s) 21
BssAI RCCGGY 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 303
BssT1I CCWWGG 1 cut(s) 303
Bst4CI ACNGT 1 cut(s) 80
BstC8I GCNNGC 1 cut(s) 29
BstDEI CTNAG 1 cut(s) 190
BstHHI GCGC 1 cut(s) 44
BstMAI GTCTC 2 cut(s) 27, 293
BstV1I GCAGC 1 cut(s) 170
BstV2I GAAGAC 1 cut(s) 169
BsuRI GGCC 1 cut(s) 27
BtgZI GCGATG 1 cut(s) 69
BtsIMutI CAGTG 3 cut(s) 28, 85, 138
Cac8I GCNNGC 1 cut(s) 29
CfoI GCGC 1 cut(s) 44
Cfr10I RCCGGY 1 cut(s) 27
CseI GACGC 1 cut(s) 98
CviAII CATG 2 cut(s) 37, 166
CviJI RGCY 7 cut(s) 14, 27, 52, 64, 161, 223, 243
CviKI_1 RGCY 7 cut(s) 14, 27, 52, 64, 161, 223, 243
DdeI CTNAG 1 cut(s) 190
EaeI YGGCCR 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 303
Eco31I GGTCTC 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 303
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 2 cut(s) 40, 169
FaiI YATR 3 cut(s) 38, 167, 185
FatI CATG 2 cut(s) 36, 165
Fnu4HI GCNGC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 1 cut(s) 325
GlaI GCGC 1 cut(s) 43
GluI GCNGC 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 4
HaeIII GGCC 1 cut(s) 27
HapII CCGG 2 cut(s) 28, 248
HgaI GACGC 1 cut(s) 98
HhaI GCGC 1 cut(s) 44
Hin1II CATG 2 cut(s) 40, 169
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HinfI GANTC 3 cut(s) 210, 260, 273
HpaII CCGG 2 cut(s) 28, 248
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 2 cut(s) 95, 234
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 1 cut(s) 310
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 80
HpyCH4V TGCA 2 cut(s) 83, 257
HpyF3I CTNAG 1 cut(s) 190
Hsp92II CATG 2 cut(s) 40, 169
HspAI GCGC 1 cut(s) 42
Kpn2I TCCGGA 1 cut(s) 247
KroI GCCGGC 1 cut(s) 27
KroNI GCCGGC 1 cut(s) 29
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 3 cut(s) 34, 41, 261
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 1 cut(s) 92
MaeI CTAG 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 116
MboII GAAGA 2 cut(s) 120, 169
MlyI GAGTC 1 cut(s) 267
MmeI TCCRAC 3 cut(s) 118, 301, 307
MnlI CCTC 5 cut(s) 28, 63, 99, 172, 244
MroI TCCGGA 1 cut(s) 247
MroNI GCCGGC 1 cut(s) 27
MspI CCGG 2 cut(s) 28, 248
NaeI GCCGGC 1 cut(s) 29
NgoMIV GCCGGC 1 cut(s) 27
NlaIII CATG 2 cut(s) 40, 169
NlaIV GGNNCC 1 cut(s) 13
PdiI GCCGGC 1 cut(s) 29
PfeI GAWTC 2 cut(s) 210, 260
PkrI GCNGC 1 cut(s) 160
PleI GAGTC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 13
SatI GCNGC 1 cut(s) 159
SchI GAGTC 1 cut(s) 267
SetI ASST 6 cut(s) 20, 75, 245, 255, 309, 323
SfaNI GCATC 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
SsiI CCGC 1 cut(s) 227
SspMI CTAG 1 cut(s) 325
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 1 cut(s) 80
TaqI TCGA 1 cut(s) 5
TfiI GAWTC 2 cut(s) 210, 260
TscAI CASTG 3 cut(s) 28, 85, 138
TseI GCWGC 1 cut(s) 158
TspGWI ACGGA 1 cut(s) 222
TspRI CASTG 3 cut(s) 28, 85, 138
XspI CTAG 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.