Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0009584

Physical Location & Seq

Genomic Coordinates Reverse (-)

13935069 .. 13942196

Gene Structure 7128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG092400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCAGCCTCCATGCTTTTCGTCTTCTCCATATTCTCAGTCCTATTATTCAACGGAATCACGGCAGAGCCACCGCTTCTGAACGACGGCTCTCCGGAGGTTGCAGATTCGCCGATAAGACTCCAACTCCAACTTCGGTTGCTGGAGACCAAGGTTTACCTTCTAGAATCAAGCATTGATGAGAAAAACCGTGAACTGAGGAAAAAGGATGAAAAAATTAGGCAGATGGAGGAGATTATTCAAGGGAAATCAAACAGCAATGCATTTTTCCAAAGTGAGACAGAGGCTGTCCAGGCATTAGAAATGAAAGCTCAGGTTAATAGTTTGGCTCAGCTCAGCATTGAAACAATCAAATCCACATGGATACCAGGTTTGAAGAAACAATCTTTAGAAATTGTAGCCTATCTTGAACCAAATATTCAATTACTCACTGCAAAAACTGTTGATATCTACCATGCGTCAAAGAGTTCTGTAGCACCATTTGTTTTCAAGGCACAAGAAATGGCAAATCCTCACATTCAGGTAGCTAAGAAGTTTACGGAGCCATACATAGCTCAGCTTATGATGGTGATAGATGAGGCTACAATGGTGACAAGAACCCATTTAGCTAACATACACGTTGCCTTGAAGCCATATACAAAGCAAGTACTCCACGCATGCAGAAAATTCATCAAATCTGCAACTTTTTACCATCATGAGGTCCAAGAAATGCTCAAAAACAATACGTTCACGCAATCACTTGCAACTATCGAACTGGCATGGCTTCTGGTGAAGAGTCTTCTATTGGTTTCTACACTTCAGGAGAGAAACTTGCTTGGTTCTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

275

Amino Acids

31.16

Weight (kDa)

8.49

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30090
fragaria_vesca	FvH4_4g07490 FvH4_4g07490 FvH4_4g07490
malus_domestica	MD16G1251700.v1.1
prunus_persica	Prupe.1G078300_v2.0.a1 Prupe.1G078300_v2.0.a1 Prupe.1G078300_v2.0.a1 Prupe.1G078300_v2.0.a1 Prupe.1G078300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0399971
rosa_laevigata	RLG00000009223
rosa_roxburghii	Rroxscaffold_5G00344870 Rroxscaffold_5G00344890
rosa_rugosa	Rorug04G0021900
rosa_samantha	Rh4AG097500 Rh4BG095400 Rh4BG095500 Rh4CG106700 Rh4DG092400
rosa_wichuraiana	Rw4G008080 Rw4G008090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	94
AciI	CCGC	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	665
AcuI	CTGAAG	1 cut(s)	782
AfaI	GTAC	1 cut(s)	648
AfiI	CCNNNNNNNGG	1 cut(s)	697
AflIII	ACRYGT	1 cut(s)	616
AgsI	TTSAA	8 cut(s)	52, 242, 344, 376, 410, 422, 490, 628
AjnI	CCWGG	2 cut(s)	291, 367
AjuI	GAANNNNNNNTTGG	2 cut(s)	117, 149
AluBI	AGCT	6 cut(s)	311, 334, 527, 554, 559, 608
AluI	AGCT	6 cut(s)	311, 334, 527, 554, 559, 608
Alw26I	GTCTC	2 cut(s)	140, 272
AlwNI	CAGNNNCTG	1 cut(s)	287
Aor13HI	TCCGGA	1 cut(s)	94
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	665
AspS9I	GGNCC	1 cut(s)	700
AsuHPI	GGTGA	3 cut(s)	580, 601, 781
AvaII	GGWCC	1 cut(s)	700
BbsI	GAAGAC	2 cut(s)	16, 770
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	3 cut(s)	220, 559, 699
BceAI	ACGGC	2 cut(s)	78, 103
BciT130I	CCWGG	2 cut(s)	293, 369
BciVI	GTATCC	1 cut(s)	357
BcoDI	GTCTC	2 cut(s)	140, 272
BfaI	CTAG	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	471
BfuI	GTATCC	1 cut(s)	357
BisI	GCNGC	1 cut(s)	6
BlpI	GCTNAGC	3 cut(s)	330, 335, 555
BlsI	GCNGC	1 cut(s)	7
BmcAI	AGTACT	1 cut(s)	648
Bme1390I	CCNGG	2 cut(s)	293, 369
Bme18I	GGWCC	1 cut(s)	700
BmgT120I	GGNCC	1 cut(s)	700
BmiI	GGNNCC	1 cut(s)	543
BmrFI	CCNGG	2 cut(s)	293, 369
BpiI	GAAGAC	2 cut(s)	16, 770
BpmI	CTGGAG	1 cut(s)	164
Bpu10I	CCTNAGC	1 cut(s)	312
Bpu1102I	GCTNAGC	3 cut(s)	330, 335, 555
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	94
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bsc4I	CCNNNNNNNGG	1 cut(s)	697
Bse1I	ACTGG	1 cut(s)	759
Bse3DI	GCAATG	1 cut(s)	265
BseAI	TCCGGA	1 cut(s)	94
BseBI	CCWGG	2 cut(s)	293, 369
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	697
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	6 cut(s)	51, 188, 326, 344, 349, 569
BseNI	ACTGG	1 cut(s)	759
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	697
BsmAI	GTCTC	2 cut(s)	140, 272
Bso31I	GGTCTC	1 cut(s)	140
Bsp13I	TCCGGA	1 cut(s)	94
Bsp1720I	GCTNAGC	3 cut(s)	330, 335, 555
BspACI	CCGC	1 cut(s)	74
BspCNI	CTCAG	6 cut(s)	50, 189, 325, 343, 348, 568
BspEI	TCCGGA	1 cut(s)	94
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	1 cut(s)	543
BspTNI	GGTCTC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	265
BsrI	ACTGG	1 cut(s)	759
BssECI	CCNNGG	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	2 cut(s)	293, 369
Bst4CI	ACNGT	2 cut(s)	191, 442
Bst6I	CTCTTC	1 cut(s)	767
BstC8I	GCNNGC	1 cut(s)	658
BstDEI	CTNAG	7 cut(s)	37, 197, 312, 330, 335, 528, 555
BstF5I	GGATG	1 cut(s)	214
BstMAI	GTCTC	2 cut(s)	140, 272
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNI	CCWGG	2 cut(s)	293, 369
BstNSI	RCATGY	1 cut(s)	660
BstSCI	CCNGG	2 cut(s)	291, 367
BstSFI	CTRYAG	1 cut(s)	471
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	2 cut(s)	16, 770
BsuI	GTATCC	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	1 cut(s)	429
Cac8I	GCNNGC	1 cut(s)	658
CaiI	CAGNNNCTG	1 cut(s)	287
CciI	TCATGA	1 cut(s)	694
Cfr13I	GGNCC	1 cut(s)	700
CseI	GACGC	1 cut(s)	447
CsiI	ACCWGGT	1 cut(s)	367
Csp6I	GTAC	1 cut(s)	647
CviAII	CATG	6 cut(s)	13, 360, 455, 657, 695, 759
CviQI	GTAC	1 cut(s)	647
DdeI	CTNAG	7 cut(s)	37, 197, 312, 330, 335, 528, 555
Eam1104I	CTCTTC	1 cut(s)	767
EarI	CTCTTC	1 cut(s)	767
Eco130I	CCWWGG	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	140
Eco32I	GATATC	1 cut(s)	448
Eco47I	GGWCC	1 cut(s)	700
Eco57I	CTGAAG	1 cut(s)	782
EcoRII	CCWGG	2 cut(s)	291, 367
EcoRV	GATATC	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	150
EcoT22I	ATGCAT	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	6 cut(s)	16, 363, 458, 660, 698, 762
FatI	CATG	6 cut(s)	12, 359, 454, 656, 694, 758
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	1 cut(s)	6
GsuI	CTGGAG	1 cut(s)	164
HapII	CCGG	1 cut(s)	95
HgaI	GACGC	1 cut(s)	447
Hin1II	CATG	6 cut(s)	16, 363, 458, 660, 698, 762
HinfI	GANTC	5 cut(s)	57, 107, 120, 167, 775
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	3 cut(s)	580, 601, 781
Hpy166II	GTNNAC	4 cut(s)	157, 194, 537, 729
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	5 cut(s)	95, 164, 407, 695, 800
Hpy8I	GTNNAC	4 cut(s)	157, 194, 537, 729
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	2 cut(s)	191, 442
HpyCH4IV	ACGT	2 cut(s)	618, 725
HpyCH4V	TGCA	6 cut(s)	104, 263, 434, 660, 680, 743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	7 cut(s)	37, 197, 312, 330, 335, 528, 555
HpySE526I	ACGT	2 cut(s)	618, 725
Hsp92II	CATG	6 cut(s)	16, 363, 458, 660, 698, 762
Kpn2I	TCCGGA	1 cut(s)	94
LmnI	GCTCC	1 cut(s)	541
Lsp1109I	GCAGC	1 cut(s)	17
MabI	ACCWGGT	1 cut(s)	367
MaeI	CTAG	1 cut(s)	164
MaeII	ACGT	2 cut(s)	618, 725
MaeIII	GTNAC	1 cut(s)	589
MboII	GAAGA	4 cut(s)	16, 388, 770, 784
MluCI	AATT	4 cut(s)	216, 393, 422, 665
MlyI	GAGTC	2 cut(s)	114, 784
MmeI	TCCRAC	2 cut(s)	148, 154
MnlI	CCTC	8 cut(s)	19, 91, 192, 223, 277, 522, 571, 691
Mph1103I	ATGCAT	1 cut(s)	265
MroI	TCCGGA	1 cut(s)	94
MseI	TTAA	1 cut(s)	318
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	2 cut(s)	293, 369
MvaI	CCWGG	2 cut(s)	293, 369
MwoI	GCNNNNNNNGC	1 cut(s)	293
NlaIII	CATG	6 cut(s)	16, 363, 458, 660, 698, 762
NlaIV	GGNNCC	1 cut(s)	543
NmuCI	GTSAC	1 cut(s)	589
NsiI	ATGCAT	1 cut(s)	265
NspI	RCATGY	1 cut(s)	660
PaeI	GCATGC	1 cut(s)	660
PagI	TCATGA	1 cut(s)	694
PfeI	GAWTC	3 cut(s)	57, 107, 167
PkrI	GCNGC	1 cut(s)	7
PleI	GAGTC	2 cut(s)	114, 783
PpsI	GAGTC	2 cut(s)	114, 783
Psp6I	CCWGG	2 cut(s)	291, 367
PspGI	CCWGG	2 cut(s)	291, 367
PspN4I	GGNNCC	1 cut(s)	543
PspPI	GGNCC	1 cut(s)	700
PstNI	CAGNNNCTG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	648
RsaNI	GTAC	1 cut(s)	647
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	1 cut(s)	6
Sau96I	GGNCC	1 cut(s)	700
ScaI	AGTACT	1 cut(s)	648
SchI	GAGTC	2 cut(s)	114, 784
ScrFI	CCNGG	2 cut(s)	293, 369
SexAI	ACCWGGT	1 cut(s)	367
SfcI	CTRYAG	1 cut(s)	471
SinI	GGWCC	1 cut(s)	700
SphI	GCATGC	1 cut(s)	660
Sse9I	AATT	4 cut(s)	216, 393, 422, 665
SsiI	CCGC	1 cut(s)	74
SspI	AATATT	1 cut(s)	418
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	2 cut(s)	291, 367
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	2 cut(s)	191, 442
TaiI	ACGT	2 cut(s)	621, 728
TaqI	TCGA	1 cut(s)	750
TasI	AATT	4 cut(s)	216, 393, 422, 665
TatI	WGTACW	1 cut(s)	646
TfiI	GAWTC	3 cut(s)	57, 107, 167
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	1 cut(s)	589
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	3 cut(s)	225, 320, 658
TspGWI	ACGGA	2 cut(s)	69, 554
TspRI	CASTG	1 cut(s)	436
VpaK11BI	GGWCC	1 cut(s)	700
XapI	RAATTY	1 cut(s)	665
XbaI	TCTAGA	1 cut(s)	163
XceI	RCATGY	1 cut(s)	660
XspI	CTAG	1 cut(s)	164
ZrmI	AGTACT	1 cut(s)	648
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.