Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0009584

Physical Location & Seq

Genomic Coordinates Reverse (-)

19771990 .. 19781529

Gene Structure 9540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG106700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGAAGCCTCCATGCTTTTCGTCTTCTCCATATTCTCAGTCCTATTATTCAACGGAATCACGGCAGAGCCACCGCTTCTGAACGACGGGTCTCCGGAGGTTGCAGATTCGCCGATAAGACTCCAACTCCAACTTCGGTTGCTGGAGACCAAGGTTTACCTTCTAGAATCAAGCATTGATGAGAAAAACCGTGAACTCAGGAAAAAGGATGAAAAAATTAGGCAGATGGAGGAGATTATTCAAGGGAAATCAAACAGCAATGCATTTTTCCAAAGTGAGACAGAGGCTGTCCAGGGAAGAGAATTTTTAGATGCTATGCAATTCACAGATGAGTTACGTGAGAAGAATCCTGAGGAGCTAGTGAATCAGGTTATTGAGGAAATCATATTGCAGAATAAGAAAAAAAATGAACTGGAAGCCCAAGCAAGGGTAGCTGATCAAAAAATCCAGGGATTGAAATTAAAAGTAAAAGATATCCATGGAGGATGGCTTTCAGTTCTACATTCAGTTGCAGTTCATATAAGCCATTTTCAGTCATACATAGTGACTTACTGGAATGAGTGTGGGAGACCAGCCTTGGATGTGGCAATTGAAAAGGCATTAGAAATGAAAGCTCAGGTTAATAGTTTGGCTCAGCTCAGCATTGAAACAATCAAATCTAAATGGATACCAGGTTTGAAGAAACAATCTTTAGAAATTGTAGCCTATCTTGAACCAAATATTCAATTACTCACTGCAAAAACTGTTGATATCTACCATTCGTCAAAGAGTTCTGTAGCACTATTTGTTTTCAAGGCACAAGAAATGGCAAATCCTCACATTCAGGTAGCTAACAAGTTTACCCAGCCATACATAGCTCAGCTTATGATGGCGATAGATGAGGCTACAACGGTGACAAAAACCCATTTAGCTAACATACACGTTACCTTGAAGCCATATACAAAGCAAGTACTCCACGCATGCAGAAAATTCATCAAATCTGCAACTTTTTACCATCATGAGGTCCAAGAAATGCTCAAAAACAATACGTTGACACAATCACTTGCAACTATCGAACTGGCATGGCTTCTGGCCACTGCTTTACTGGCCCTGCCTGCAGTTCTTATGTTTAAGTTGACTTCTGTTATTTTCAGAAAAAAAGGCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

382

Amino Acids

43.38

Weight (kDa)

8.28

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30090
fragaria_vesca	FvH4_4g07490 FvH4_4g07490 FvH4_4g07490
malus_domestica	MD16G1251700.v1.1
prunus_persica	Prupe.1G078300_v2.0.a1 Prupe.1G078300_v2.0.a1 Prupe.1G078300_v2.0.a1 Prupe.1G078300_v2.0.a1 Prupe.1G078300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0399971
rosa_laevigata	RLG00000009223
rosa_roxburghii	Rroxscaffold_5G00344870 Rroxscaffold_5G00344890
rosa_rugosa	Rorug04G0021900
rosa_samantha	Rh4AG097500 Rh4BG095400 Rh4BG095500 Rh4CG106700 Rh4DG092400
rosa_wichuraiana	Rw4G008080 Rw4G008090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	94
AciI	CCGC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	1071
AcsI	RAATTY	2 cut(s)	302, 968
AfaI	GTAC	1 cut(s)	951
AfiI	CCNNNNNNNGG	3 cut(s)	426, 427, 1000
AflIII	ACRYGT	1 cut(s)	919
AjnI	CCWGG	3 cut(s)	291, 447, 670
AjuI	GAANNNNNNNTTGG	2 cut(s)	117, 149
AluBI	AGCT	8 cut(s)	358, 434, 614, 637, 830, 857, 862, 911
AluI	AGCT	8 cut(s)	358, 434, 614, 637, 830, 857, 862, 911
Alw26I	GTCTC	4 cut(s)	96, 140, 272, 562
AlwNI	CAGNNNCTG	1 cut(s)	287
Aor13HI	TCCGGA	1 cut(s)	94
AoxI	GGCC	2 cut(s)	1071, 1086
ApoI	RAATTY	2 cut(s)	302, 968
AspS9I	GGNCC	2 cut(s)	1003, 1087
AsuHPI	GGTGA	1 cut(s)	904
AvaII	GGWCC	1 cut(s)	1003
AxyI	CCTNAGG	1 cut(s)	351
BalI	TGGCCA	1 cut(s)	1073
BbsI	GAAGAC	1 cut(s)	16
BccI	CCATC	4 cut(s)	220, 480, 862, 1002
BceAI	ACGGC	1 cut(s)	78
BciT130I	CCWGG	3 cut(s)	293, 449, 672
BciVI	GTATCC	1 cut(s)	660
BclI	TGATCA	1 cut(s)	436
BcoDI	GTCTC	4 cut(s)	96, 140, 272, 562
BfaI	CTAG	2 cut(s)	164, 359
BfmI	CTRYAG	2 cut(s)	774, 1095
BfuI	GTATCC	1 cut(s)	660
BlpI	GCTNAGC	3 cut(s)	633, 638, 858
BmcAI	AGTACT	1 cut(s)	951
Bme1390I	CCNGG	3 cut(s)	293, 449, 672
Bme18I	GGWCC	1 cut(s)	1003
BmgT120I	GGNCC	2 cut(s)	1003, 1087
BmrFI	CCNGG	3 cut(s)	293, 449, 672
BmsI	GCATC	1 cut(s)	301
BpiI	GAAGAC	1 cut(s)	16
BpmI	CTGGAG	1 cut(s)	164
Bpu10I	CCTNAGC	1 cut(s)	615
Bpu1102I	GCTNAGC	3 cut(s)	633, 638, 858
BsaAI	YACGTR	1 cut(s)	338
BsaI	GGTCTC	3 cut(s)	96, 140, 562
BsaJI	CCNNGG	5 cut(s)	150, 292, 448, 478, 576
BsaWI	WCCGGW	1 cut(s)	94
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bsc4I	CCNNNNNNNGG	3 cut(s)	426, 427, 1000
Bse1I	ACTGG	4 cut(s)	417, 557, 1062, 1089
Bse21I	CCTNAGG	1 cut(s)	351
Bse3DI	GCAATG	1 cut(s)	265
BseAI	TCCGGA	1 cut(s)	94
BseBI	CCWGG	3 cut(s)	293, 449, 672
BseDI	CCNNGG	5 cut(s)	150, 292, 448, 478, 576
BseGI	GGATG	3 cut(s)	214, 491, 586
BseLI	CCNNNNNNNGG	3 cut(s)	426, 427, 1000
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	7 cut(s)	51, 211, 342, 629, 647, 652, 872
BseNI	ACTGG	4 cut(s)	417, 557, 1062, 1089
BseRI	GAGGAG	2 cut(s)	245, 368
BseYI	CCCAGC	1 cut(s)	843
BshFI	GGCC	2 cut(s)	1073, 1088
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	3 cut(s)	426, 427, 1000
BsmAI	GTCTC	4 cut(s)	96, 140, 272, 562
BsnI	GGCC	2 cut(s)	1073, 1088
Bso31I	GGTCTC	3 cut(s)	96, 140, 562
Bsp13I	TCCGGA	1 cut(s)	94
Bsp143I	GATC	1 cut(s)	436
Bsp1720I	GCTNAGC	3 cut(s)	633, 638, 858
Bsp19I	CCATGG	1 cut(s)	478
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	2 cut(s)	1073, 1088
BspCNI	CTCAG	7 cut(s)	50, 210, 343, 628, 646, 651, 871
BspEI	TCCGGA	1 cut(s)	94
BspHI	TCATGA	1 cut(s)	997
BspMAI	CTGCAG	1 cut(s)	1099
BspTNI	GGTCTC	3 cut(s)	96, 140, 562
BsrDI	GCAATG	1 cut(s)	265
BsrI	ACTGG	4 cut(s)	417, 557, 1062, 1089
BssECI	CCNNGG	5 cut(s)	150, 292, 448, 478, 576
BssMI	GATC	1 cut(s)	436
BssT1I	CCWWGG	3 cut(s)	150, 478, 576
Bst2UI	CCWGG	3 cut(s)	293, 449, 672
Bst4CI	ACNGT	3 cut(s)	191, 745, 892
Bst6I	CTCTTC	1 cut(s)	292
BstBAI	YACGTR	1 cut(s)	338
BstC8I	GCNNGC	2 cut(s)	961, 1095
BstDEI	CTNAG	7 cut(s)	37, 197, 351, 615, 633, 638, 858
BstDSI	CCRYGG	1 cut(s)	478
BstF5I	GGATG	3 cut(s)	214, 491, 586
BstKTI	GATC	1 cut(s)	439
BstMAI	GTCTC	4 cut(s)	96, 140, 272, 562
BstMBI	GATC	1 cut(s)	436
BstMWI	GCNNNNNNNGC	3 cut(s)	431, 1085, 1094
BstNI	CCWGG	3 cut(s)	293, 449, 672
BstNSI	RCATGY	1 cut(s)	963
BstSCI	CCNGG	3 cut(s)	291, 447, 670
BstSFI	CTRYAG	2 cut(s)	774, 1095
BstV2I	GAAGAC	1 cut(s)	16
Bsu36I	CCTNAGG	1 cut(s)	351
BsuI	GTATCC	1 cut(s)	660
BsuRI	GGCC	2 cut(s)	1073, 1088
BtgI	CCRYGG	1 cut(s)	478
BtsCI	GGATG	3 cut(s)	214, 491, 586
BtsI	GCAGTG	2 cut(s)	732, 1074
BtsIMutI	CAGTG	2 cut(s)	732, 1074
Cac8I	GCNNGC	2 cut(s)	961, 1095
CaiI	CAGNNNCTG	1 cut(s)	287
CciI	TCATGA	1 cut(s)	997
Cfr13I	GGNCC	2 cut(s)	1003, 1087
CsiI	ACCWGGT	1 cut(s)	670
Csp6I	GTAC	1 cut(s)	950
CviAII	CATG	5 cut(s)	13, 479, 960, 998, 1062
CviQI	GTAC	1 cut(s)	950
DdeI	CTNAG	7 cut(s)	37, 197, 351, 615, 633, 638, 858
DpnI	GATC	1 cut(s)	438
DpnII	GATC	1 cut(s)	436
EaeI	YGGCCR	1 cut(s)	1071
Eam1104I	CTCTTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	292
Eco130I	CCWWGG	3 cut(s)	150, 478, 576
Eco31I	GGTCTC	3 cut(s)	96, 140, 562
Eco32I	GATATC	2 cut(s)	475, 751
Eco47I	GGWCC	1 cut(s)	1003
Eco81I	CCTNAGG	1 cut(s)	351
EcoRII	CCWGG	3 cut(s)	291, 447, 670
EcoRV	GATATC	2 cut(s)	475, 751
EcoT14I	CCWWGG	3 cut(s)	150, 478, 576
EcoT22I	ATGCAT	1 cut(s)	265
ErhI	CCWWGG	3 cut(s)	150, 478, 576
FaeI	CATG	5 cut(s)	16, 482, 963, 1001, 1065
FatI	CATG	5 cut(s)	12, 478, 959, 997, 1061
FbaI	TGATCA	1 cut(s)	436
FokI	GGATG	3 cut(s)	221, 498, 593
FspBI	CTAG	2 cut(s)	164, 359
GsaI	CCCAGC	1 cut(s)	847
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	2 cut(s)	1073, 1088
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	5 cut(s)	16, 482, 963, 1001, 1065
HincII	GTYRAC	2 cut(s)	1032, 1116
HindII	GTYRAC	2 cut(s)	1032, 1116
HinfI	GANTC	6 cut(s)	57, 107, 120, 167, 346, 364
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	1 cut(s)	904
Hpy166II	GTNNAC	5 cut(s)	157, 194, 840, 1032, 1116
Hpy188I	TCNGA	2 cut(s)	81, 1133
Hpy188III	TCNNGA	6 cut(s)	95, 164, 199, 350, 710, 998
Hpy8I	GTNNAC	5 cut(s)	157, 194, 840, 1032, 1116
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	3 cut(s)	191, 745, 892
HpyCH4IV	ACGT	3 cut(s)	337, 921, 1028
HpyF10VI	GCNNNNNNNGC	3 cut(s)	431, 1085, 1094
HpyF3I	CTNAG	7 cut(s)	37, 197, 351, 615, 633, 638, 858
HpySE526I	ACGT	3 cut(s)	337, 921, 1028
Hsp92II	CATG	5 cut(s)	16, 482, 963, 1001, 1065
Kpn2I	TCCGGA	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	436
Kzo9I	GATC	1 cut(s)	436
LmnI	GCTCC	1 cut(s)	355
LweI	GCATC	1 cut(s)	301
MabI	ACCWGGT	1 cut(s)	670
MaeI	CTAG	2 cut(s)	164, 359
MaeII	ACGT	3 cut(s)	337, 921, 1028
MaeIII	GTNAC	4 cut(s)	333, 544, 892, 922
MalI	GATC	1 cut(s)	438
MboI	GATC	1 cut(s)	436
MboII	GAAGA	4 cut(s)	16, 309, 355, 691
MfeI	CAATTG	1 cut(s)	588
MlsI	TGGCCA	1 cut(s)	1073
MluCI	AATT	8 cut(s)	216, 302, 320, 458, 588, 696, 725, 968
MluNI	TGGCCA	1 cut(s)	1073
MlyI	GAGTC	1 cut(s)	114
MmeI	TCCRAC	2 cut(s)	148, 154
Mox20I	TGGCCA	1 cut(s)	1073
Mph1103I	ATGCAT	1 cut(s)	265
MroI	TCCGGA	1 cut(s)	94
MscI	TGGCCA	1 cut(s)	1073
MseI	TTAA	3 cut(s)	461, 621, 1110
Msp20I	TGGCCA	1 cut(s)	1073
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	3 cut(s)	293, 449, 672
MunI	CAATTG	1 cut(s)	588
MvaI	CCWGG	3 cut(s)	293, 449, 672
MwoI	GCNNNNNNNGC	3 cut(s)	431, 1085, 1094
NcoI	CCATGG	1 cut(s)	478
NdeII	GATC	1 cut(s)	436
NlaIII	CATG	5 cut(s)	16, 482, 963, 1001, 1065
NmuCI	GTSAC	2 cut(s)	544, 892
NsiI	ATGCAT	1 cut(s)	265
NspI	RCATGY	1 cut(s)	963
PaeI	GCATGC	1 cut(s)	963
PagI	TCATGA	1 cut(s)	997
PfeI	GAWTC	5 cut(s)	57, 107, 167, 346, 364
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
Ppu21I	YACGTR	1 cut(s)	338
Psp6I	CCWGG	3 cut(s)	291, 447, 670
PspFI	CCCAGC	1 cut(s)	843
PspGI	CCWGG	3 cut(s)	291, 447, 670
PspPI	GGNCC	2 cut(s)	1003, 1087
PstI	CTGCAG	1 cut(s)	1099
PstNI	CAGNNNCTG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	951
RsaNI	GTAC	1 cut(s)	950
SaqAI	TTAA	3 cut(s)	461, 621, 1110
Sau3AI	GATC	1 cut(s)	436
Sau96I	GGNCC	2 cut(s)	1003, 1087
ScaI	AGTACT	1 cut(s)	951
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	3 cut(s)	293, 449, 672
SexAI	ACCWGGT	1 cut(s)	670
SfaNI	GCATC	1 cut(s)	301
SfcI	CTRYAG	2 cut(s)	774, 1095
SinI	GGWCC	1 cut(s)	1003
SphI	GCATGC	1 cut(s)	963
Sse9I	AATT	8 cut(s)	216, 302, 320, 458, 588, 696, 725, 968
SsiI	CCGC	1 cut(s)	74
SspI	AATATT	1 cut(s)	721
SspMI	CTAG	2 cut(s)	164, 359
StyD4I	CCNGG	3 cut(s)	291, 447, 670
StyI	CCWWGG	3 cut(s)	150, 478, 576
TaaI	ACNGT	3 cut(s)	191, 745, 892
TaiI	ACGT	3 cut(s)	340, 924, 1031
TaqI	TCGA	1 cut(s)	1053
TasI	AATT	8 cut(s)	216, 302, 320, 458, 588, 696, 725, 968
TatI	WGTACW	1 cut(s)	949
TfiI	GAWTC	5 cut(s)	57, 107, 167, 346, 364
Tru1I	TTAA	3 cut(s)	461, 621, 1110
Tru9I	TTAA	3 cut(s)	461, 621, 1110
TscAI	CASTG	2 cut(s)	739, 1081
TseFI	GTSAC	2 cut(s)	544, 892
Tsp45I	GTSAC	2 cut(s)	544, 892
TspDTI	ATGAA	5 cut(s)	225, 423, 506, 623, 961
TspGWI	ACGGA	1 cut(s)	69
TspRI	CASTG	2 cut(s)	739, 1081
VpaK11BI	GGWCC	1 cut(s)	1003
XapI	RAATTY	2 cut(s)	302, 968
XbaI	TCTAGA	1 cut(s)	163
XceI	RCATGY	1 cut(s)	963
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1081
XspI	CTAG	2 cut(s)	164, 359
ZrmI	AGTACT	1 cut(s)	951
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.