Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009584

Physical Location & Seq

Genomic Coordinates Reverse (-)

28182732 .. 28191123

Gene Structure 8392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1251700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCGCCCTCTAAGCTTTTACTCTTCTCCGTATTCTTAGCCCTATCGTTCACCGGAATTACGGCGTACCCACCCCCTCCAGACGACGGCGCTTCTGATTCTGCTCAGGAGGTTGCAGATTCGTCTCTGGCACTCCAACTTCAGCAACTCAAGTCCAGAGTTTCACTTCTAGAATCAAGCATTGATGACAAAAACTGTGAGCTGAGAAAAAAGGATGAAAGTATTAAACTGATGGAGAAGGTTATTCAAGAGAAATCAAATAGCATTGCTTTGTTACAAAGTGCTATAGAGTCTGTCCAGCTTCAAAAGGTAAATGATGAACAGAAGACTGGAATTCAGAAAACTGAACATGATCTTCAAGTTGCAGAGGAAGAAATAGTGAAGGAGAAGTTTGGGATTTCTTCAATATCTGAAGATTTGACTGAGGTCCATGGAGGATGGCTTCCACATACATTTGGAGTTCATACGTACATTGTGACTTACTGGAACGAGCTTGGAAGACCAGCCTTCAATCTGGGAATTGAAAAGGCCTTAAAAATGAAAGCTCGTGGTGAGGGTTGGACTGAGATCATCGTCGAAAGAATCAGAACAAACTGGATCCCAAGGTTGAAGAAACAGTCTCTGGAATTTAAAGCCTATCTTGAACCAAACATTCGATTAGTCACTGCAAAAATTGTTGATGTATATCGGTCATCAAAGAGTTCTATAGGAACCCTTGTTTTGAAGGCACAAAATATGGCAGATCCTTACATTCAGGAAGCTAAGAAATATACCGAGCCATACATTGATCGGGTTGCTATGGTGACTAAACCACATTTAGATAAATTACATATTGCCTTGAAGCCGTATACCAAAAAAGTACTAAATGCATATAGAAAAGTCATCACCACTACAACATTTTTGCATCATGAGGTCAAAGAAATTCTAAAAAATAATGAGTTGACGCAACCTGTTGCAAGTATGGAACTGGCATGGTTTGCGGCTACTGCATTACTTGCCCTGCCTGCAGTATTTCTGTTTAAGTTGTATTCGGCTACTTTAGGGTTAAAAAAAGACAAAAAAGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

356

Amino Acids

40.01

Weight (kDa)

8.9

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30090
fragaria_vesca	FvH4_4g07490 FvH4_4g07490 FvH4_4g07490
malus_domestica	MD16G1251700.v1.1
prunus_persica	Prupe.1G078300_v2.0.a1 Prupe.1G078300_v2.0.a1 Prupe.1G078300_v2.0.a1 Prupe.1G078300_v2.0.a1 Prupe.1G078300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0399971
rosa_laevigata	RLG00000009223
rosa_roxburghii	Rroxscaffold_5G00344870 Rroxscaffold_5G00344890
rosa_rugosa	Rorug04G0021900
rosa_samantha	Rh4AG097500 Rh4BG095400 Rh4BG095500 Rh4CG106700 Rh4DG092400
rosa_wichuraiana	Rw4G008080 Rw4G008090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	848
AciI	CCGC	1 cut(s)	980
AclWI	GGATC	3 cut(s)	592, 605, 737
AcsI	RAATTY	3 cut(s)	333, 626, 921
AcuI	CTGAAG	2 cut(s)	125, 432
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	68, 470, 861
AfiI	CCNNNNNNNGG	1 cut(s)	86
AluBI	AGCT	6 cut(s)	16, 202, 301, 493, 545, 761
AluI	AGCT	6 cut(s)	16, 202, 301, 493, 545, 761
Alw26I	GTCTC	2 cut(s)	129, 624
AlwI	GGATC	3 cut(s)	592, 605, 737
AlwNI	CAGNNNCTG	1 cut(s)	622
AoxI	GGCC	1 cut(s)	528
ApoI	RAATTY	3 cut(s)	333, 626, 921
AspLEI	GCGC	2 cut(s)	7, 92
AspS9I	GGNCC	1 cut(s)	427
AsuHPI	GGTGA	4 cut(s)	43, 563, 814, 877
AvaII	GGWCC	1 cut(s)	427
BamHI	GGATCC	1 cut(s)	597
BanI	GGYRCC	1 cut(s)	4
BauI	CACGAG	1 cut(s)	546
BbsI	GAAGAC	2 cut(s)	332, 505
BccI	CCATC	2 cut(s)	226, 432
BceAI	ACGGC	3 cut(s)	78, 103, 829
BcoDI	GTCTC	2 cut(s)	129, 624
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	3 cut(s)	285, 705, 1005
BfoI	RGCGCY	2 cut(s)	8, 93
BisI	GCNGC	1 cut(s)	981
BlsI	GCNGC	1 cut(s)	982
BmcAI	AGTACT	1 cut(s)	861
Bme18I	GGWCC	1 cut(s)	427
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	3 cut(s)	6, 599, 712
BmsI	GCATC	1 cut(s)	913
BoxI	GACNNNNGTC	1 cut(s)	425
BpiI	GAAGAC	2 cut(s)	332, 505
BpmI	CTGGAG	1 cut(s)	63
Bpu10I	CCTNAGC	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	134
BsaAI	YACGTR	1 cut(s)	468
BsaBI	GATNNNNATC	1 cut(s)	684
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	430, 602
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse1I	ACTGG	4 cut(s)	334, 488, 599, 972
Bse3DI	GCAATG	1 cut(s)	264
Bse8I	GATNNNNATC	1 cut(s)	684
BseDI	CCNNGG	2 cut(s)	430, 602
BseGI	GGATG	2 cut(s)	220, 443
BseJI	GATNNNNATC	1 cut(s)	684
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	4 cut(s)	119, 194, 414, 555
BseNI	ACTGG	4 cut(s)	334, 488, 599, 972
BshFI	GGCC	1 cut(s)	530
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	2 cut(s)	129, 624
BsmBI	CGTCTC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	530
Bsp143I	GATC	5 cut(s)	352, 567, 597, 742, 787
Bsp19I	CCATGG	1 cut(s)	430
BspACI	CCGC	1 cut(s)	980
BspANI	GGCC	1 cut(s)	530
BspCNI	CTCAG	4 cut(s)	118, 195, 415, 556
BspHI	TCATGA	1 cut(s)	907
BspLI	GGNNCC	3 cut(s)	6, 599, 712
BspMAI	CTGCAG	1 cut(s)	1009
BspPI	GGATC	3 cut(s)	592, 605, 737
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	4 cut(s)	334, 488, 599, 972
BssECI	CCNNGG	2 cut(s)	430, 602
BssMI	GATC	5 cut(s)	352, 567, 597, 742, 787
BssNAI	GTATAC	1 cut(s)	849
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	546
BssT1I	CCWWGG	2 cut(s)	430, 602
Bst1107I	GTATAC	1 cut(s)	849
Bst2BI	CACGAG	1 cut(s)	546
Bst4CI	ACNGT	2 cut(s)	197, 618
Bst6I	CTCTTC	1 cut(s)	29
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	2 cut(s)	977, 995
BstBAI	YACGTR	1 cut(s)	468
BstC8I	GCNNGC	1 cut(s)	1005
BstDEI	CTNAG	7 cut(s)	12, 37, 105, 203, 423, 564, 762
BstDSI	CCRYGG	1 cut(s)	430
BstF5I	GGATG	2 cut(s)	220, 443
BstH2I	RGCGCY	2 cut(s)	8, 93
BstHHI	GCGC	2 cut(s)	7, 92
BstKTI	GATC	5 cut(s)	355, 570, 600, 745, 790
BstMAI	GTCTC	2 cut(s)	129, 624
BstMBI	GATC	5 cut(s)	352, 567, 597, 742, 787
BstMWI	GCNNNNNNNGC	5 cut(s)	13, 977, 986, 995, 1004
BstPAI	GACNNNNGTC	1 cut(s)	425
BstSFI	CTRYAG	3 cut(s)	285, 705, 1005
BstSNI	TACGTA	1 cut(s)	468
BstV2I	GAAGAC	2 cut(s)	332, 505
BstX2I	RGATCY	2 cut(s)	597, 742
BstYI	RGATCY	2 cut(s)	597, 742
BstZ17I	GTATAC	1 cut(s)	849
BsuRI	GGCC	1 cut(s)	530
BtgI	CCRYGG	1 cut(s)	430
BtsCI	GGATG	2 cut(s)	220, 443
BtsI	GCAGTG	1 cut(s)	663
BtsIMutI	CAGTG	1 cut(s)	663
Cac8I	GCNNGC	1 cut(s)	1005
CaiI	CAGNNNCTG	1 cut(s)	622
CciI	TCATGA	1 cut(s)	907
CfoI	GCGC	2 cut(s)	7, 92
Cfr13I	GGNCC	1 cut(s)	427
CseI	GACGC	1 cut(s)	952
Csp6I	GTAC	3 cut(s)	67, 469, 860
CviAII	CATG	4 cut(s)	350, 431, 908, 972
CviQI	GTAC	3 cut(s)	67, 469, 860
DdeI	CTNAG	7 cut(s)	12, 37, 105, 203, 423, 564, 762
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	5 cut(s)	354, 569, 599, 744, 789
DpnII	GATC	5 cut(s)	352, 567, 597, 742, 787
DraI	TTTAAA	1 cut(s)	631
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco105I	TACGTA	1 cut(s)	468
Eco130I	CCWWGG	2 cut(s)	430, 602
Eco147I	AGGCCT	1 cut(s)	530
Eco47I	GGWCC	1 cut(s)	427
Eco57I	CTGAAG	2 cut(s)	125, 432
EcoRI	GAATTC	1 cut(s)	333
EcoT14I	CCWWGG	2 cut(s)	430, 602
EcoT22I	ATGCAT	1 cut(s)	871
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	430, 602
Esp3I	CGTCTC	1 cut(s)	129
FaeI	CATG	4 cut(s)	353, 434, 911, 975
FalI	AAGNNNNNCTT	2 cut(s)	624, 656
FatI	CATG	4 cut(s)	349, 430, 907, 971
FblI	GTMKAC	1 cut(s)	848
Fnu4HI	GCNGC	1 cut(s)	981
FokI	GGATG	2 cut(s)	227, 450
Fsp4HI	GCNGC	1 cut(s)	981
FspBI	CTAG	1 cut(s)	170
GlaI	GCGC	2 cut(s)	6, 91
GluI	GCNGC	1 cut(s)	981
GsuI	CTGGAG	1 cut(s)	63
HaeII	RGCGCY	2 cut(s)	8, 93
HaeIII	GGCC	1 cut(s)	530
HapII	CCGG	1 cut(s)	54
HgaI	GACGC	1 cut(s)	952
HhaI	GCGC	2 cut(s)	7, 92
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	353, 434, 911, 975
Hin6I	GCGC	2 cut(s)	5, 90
HinP1I	GCGC	2 cut(s)	5, 90
HincII	GTYRAC	1 cut(s)	942
HindII	GTYRAC	1 cut(s)	942
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	5 cut(s)	98, 119, 173, 290, 582
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	4 cut(s)	43, 563, 814, 877
Hpy166II	GTNNAC	3 cut(s)	51, 849, 942
Hpy188I	TCNGA	4 cut(s)	97, 339, 412, 587
Hpy188III	TCNNGA	9 cut(s)	80, 107, 156, 170, 248, 623, 641, 755, 908
Hpy8I	GTNNAC	3 cut(s)	51, 849, 942
Hpy99I	CGWCG	2 cut(s)	89, 578
HpyAV	CCTTC	4 cut(s)	232, 376, 517, 718
HpyCH4III	ACNGT	2 cut(s)	197, 618
HpyCH4IV	ACGT	1 cut(s)	467
HpyCH4V	TGCA	8 cut(s)	116, 365, 668, 869, 904, 956, 989, 1007
HpyF10VI	GCNNNNNNNGC	5 cut(s)	13, 977, 986, 995, 1004
HpyF3I	CTNAG	7 cut(s)	12, 37, 105, 203, 423, 564, 762
HpySE526I	ACGT	1 cut(s)	467
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	353, 434, 911, 975
HspAI	GCGC	2 cut(s)	5, 90
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	5 cut(s)	352, 567, 597, 742, 787
LweI	GCATC	1 cut(s)	913
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	1 cut(s)	467
MaeIII	GTNAC	4 cut(s)	273, 475, 661, 802
MalI	GATC	5 cut(s)	354, 569, 599, 744, 789
MboI	GATC	5 cut(s)	352, 567, 597, 742, 787
MboII	GAAGA	8 cut(s)	16, 337, 347, 383, 393, 425, 510, 622
MflI	RGATCY	2 cut(s)	597, 742
MluCI	AATT	7 cut(s)	57, 333, 519, 626, 672, 824, 921
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	2 cut(s)	160, 539
MnlI	CCTC	8 cut(s)	19, 87, 103, 361, 418, 428, 547, 904
Mph1103I	ATGCAT	1 cut(s)	871
MseI	TTAA	5 cut(s)	225, 533, 630, 1020, 1046
MspI	CCGG	1 cut(s)	54
MwoI	GCNNNNNNNGC	5 cut(s)	13, 977, 986, 995, 1004
NarI	GGCGCC	1 cut(s)	5
NcoI	CCATGG	1 cut(s)	430
NdeII	GATC	5 cut(s)	352, 567, 597, 742, 787
NlaIII	CATG	4 cut(s)	353, 434, 911, 975
NlaIV	GGNNCC	3 cut(s)	6, 599, 712
NmuCI	GTSAC	3 cut(s)	475, 661, 802
NsiI	ATGCAT	1 cut(s)	871
PagI	TCATGA	1 cut(s)	907
PceI	AGGCCT	1 cut(s)	530
PfeI	GAWTC	4 cut(s)	98, 119, 173, 582
PkrI	GCNGC	1 cut(s)	982
PleI	GAGTC	1 cut(s)	298
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	298
Ppu21I	YACGTR	1 cut(s)	468
PshAI	GACNNNNGTC	1 cut(s)	425
PspN4I	GGNNCC	3 cut(s)	6, 599, 712
PspPI	GGNCC	1 cut(s)	427
PstI	CTGCAG	1 cut(s)	1009
PstNI	CAGNNNCTG	1 cut(s)	622
PsuI	RGATCY	2 cut(s)	597, 742
RsaI	GTAC	3 cut(s)	68, 470, 861
RsaNI	GTAC	3 cut(s)	67, 469, 860
SaqAI	TTAA	5 cut(s)	225, 533, 630, 1020, 1046
SatI	GCNGC	1 cut(s)	981
Sau3AI	GATC	5 cut(s)	352, 567, 597, 742, 787
Sau96I	GGNCC	1 cut(s)	427
ScaI	AGTACT	1 cut(s)	861
SchI	GAGTC	1 cut(s)	299
SfaNI	GCATC	1 cut(s)	913
SfcI	CTRYAG	3 cut(s)	285, 705, 1005
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	1 cut(s)	427
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SnaBI	TACGTA	1 cut(s)	468
Sse9I	AATT	7 cut(s)	57, 333, 519, 626, 672, 824, 921
SseBI	AGGCCT	1 cut(s)	530
SsiI	CCGC	1 cut(s)	980
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	170
StuI	AGGCCT	1 cut(s)	530
StyI	CCWWGG	2 cut(s)	430, 602
TaaI	ACNGT	2 cut(s)	197, 618
TaiI	ACGT	1 cut(s)	470
TaqI	TCGA	2 cut(s)	576, 655
TaqII	GACCGA	1 cut(s)	678
TasI	AATT	7 cut(s)	57, 333, 519, 626, 672, 824, 921
TatI	WGTACW	1 cut(s)	859
TauI	GCSGC	1 cut(s)	983
TfiI	GAWTC	4 cut(s)	98, 119, 173, 582
Tru1I	TTAA	5 cut(s)	225, 533, 630, 1020, 1046
Tru9I	TTAA	5 cut(s)	225, 533, 630, 1020, 1046
TscAI	CASTG	1 cut(s)	670
TseFI	GTSAC	3 cut(s)	475, 661, 802
Tsp45I	GTSAC	3 cut(s)	475, 661, 802
TspDTI	ATGAA	4 cut(s)	231, 333, 452, 554
TspGWI	ACGGA	1 cut(s)	19
TspRI	CASTG	1 cut(s)	670
VpaK11BI	GGWCC	1 cut(s)	427
XapI	RAATTY	3 cut(s)	333, 626, 921
XbaI	TCTAGA	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	848
XspI	CTAG	1 cut(s)	170
ZrmI	AGTACT	1 cut(s)	861
Zsp2I	ATGCAT	1 cut(s)	871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.