Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0009584

Physical Location & Seq

Genomic Coordinates Reverse (-)

16254905 .. 16262707

Gene Structure 7803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG095400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAAAAAATTAGGCAGATGGAGGAGATTCTTCAAGGGAAATCAAACAAGCAATGCATTTTTCCTAAGTGAGACAGAGGCTGTCCAGGCATTAGAAATGAAAGCTCAGGTTAATAGTTCGGCTCATCTCAGCATTGAAACAATCAAATCCAAATGGATACCAGGTTTGAAGAAACAATCTTTAGAAATTGTAGCCTATCTTGAACCAAATATTCAATTACTCACTGCAAAAACTGTTGATATCTACCATGCGTCAAAGAGTTCTGCAGCACCATTTGTTTTCAAGGCACTAGAAATGGCAAATCCTCACATTCAGGTAGCTAAGAAGTTTACCGAGCCATACATAGCTCAGCTTATGATGGTGATAGATGAGGCTACAATGGTGACAAGAACCCATTTAGCTAACATACACGTTGCCTGGAAGCCATATACAAAGCAAGTACTCCACGCATGCAGAAAATTCATCAAATCTGCAACTTTTTACCATCATGAGGTCCAAGAAATGCTCAAAAACAATATGTTGACACAATCACTTGCAACTATCGAACTGGCATGGCTTCTGGTGAAGTCTTCTATTGGTTTCTACACTTCAGGAGAGAAACTTGCTTGGTTCTCGGTAACTTCTCCAAGGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

24.1

Weight (kDa)

9.73

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30090
fragaria_vesca	FvH4_4g07490 FvH4_4g07490 FvH4_4g07490
malus_domestica	MD16G1251700.v1.1
prunus_persica	Prupe.1G078300_v2.0.a1 Prupe.1G078300_v2.0.a1 Prupe.1G078300_v2.0.a1 Prupe.1G078300_v2.0.a1 Prupe.1G078300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0399971
rosa_laevigata	RLG00000009223
rosa_roxburghii	Rroxscaffold_5G00344870 Rroxscaffold_5G00344890
rosa_rugosa	Rorug04G0021900
rosa_samantha	Rh4AG097500 Rh4BG095400 Rh4BG095500 Rh4CG106700 Rh4DG092400
rosa_wichuraiana	Rw4G008080 Rw4G008090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	458
AcuI	CTGAAG	1 cut(s)	573
AfaI	GTAC	1 cut(s)	441
AfiI	CCNNNNNNNGG	1 cut(s)	490
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	6 cut(s)	34, 137, 169, 203, 215, 283
AjnI	CCWGG	3 cut(s)	84, 160, 416
AluBI	AGCT	5 cut(s)	104, 320, 347, 352, 401
AluI	AGCT	5 cut(s)	104, 320, 347, 352, 401
Alw26I	GTCTC	1 cut(s)	65
AlwNI	CAGNNNCTG	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	1 cut(s)	458
AspS9I	GGNCC	1 cut(s)	493
AsuHPI	GGTGA	3 cut(s)	373, 394, 574
AvaII	GGWCC	1 cut(s)	493
BbsI	GAAGAC	1 cut(s)	561
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	3 cut(s)	12, 352, 492
BciT130I	CCWGG	3 cut(s)	86, 162, 418
BciVI	GTATCC	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	264
BfuI	GTATCC	1 cut(s)	150
BisI	GCNGC	1 cut(s)	267
BlpI	GCTNAGC	1 cut(s)	348
BlsI	GCNGC	1 cut(s)	268
BmcAI	AGTACT	1 cut(s)	441
Bme1390I	CCNGG	3 cut(s)	86, 162, 418
Bme18I	GGWCC	1 cut(s)	493
BmgT120I	GGNCC	1 cut(s)	493
BmrFI	CCNGG	3 cut(s)	86, 162, 418
BpiI	GAAGAC	1 cut(s)	561
Bpu10I	CCTNAGC	1 cut(s)	105
Bpu1102I	GCTNAGC	1 cut(s)	348
BsaJI	CCNNGG	1 cut(s)	626
Bsc4I	CCNNNNNNNGG	1 cut(s)	490
Bse1I	ACTGG	1 cut(s)	552
Bse3DI	GCAATG	1 cut(s)	58
BseBI	CCWGG	3 cut(s)	86, 162, 418
BseDI	CCNNGG	1 cut(s)	626
BseLI	CCNNNNNNNGG	1 cut(s)	490
BseMI	GCAATG	1 cut(s)	58
BseMII	CTCAG	3 cut(s)	119, 142, 362
BseNI	ACTGG	1 cut(s)	552
BseRI	GAGGAG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	490
BsmAI	GTCTC	1 cut(s)	65
Bsp1720I	GCTNAGC	1 cut(s)	348
BspCNI	CTCAG	3 cut(s)	118, 141, 361
BspHI	TCATGA	1 cut(s)	487
BspMAI	CTGCAG	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	552
BssECI	CCNNGG	1 cut(s)	626
BssT1I	CCWWGG	1 cut(s)	626
Bst2UI	CCWGG	3 cut(s)	86, 162, 418
Bst4CI	ACNGT	1 cut(s)	235
BstC8I	GCNNGC	1 cut(s)	451
BstDEI	CTNAG	5 cut(s)	65, 105, 128, 321, 348
BstMAI	GTCTC	1 cut(s)	65
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	3 cut(s)	86, 162, 418
BstNSI	RCATGY	1 cut(s)	453
BstSCI	CCNGG	3 cut(s)	84, 160, 416
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	278
BstV2I	GAAGAC	1 cut(s)	561
BsuI	GTATCC	1 cut(s)	150
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	451
CaiI	CAGNNNCTG	1 cut(s)	80
CciI	TCATGA	1 cut(s)	487
Cfr13I	GGNCC	1 cut(s)	493
CseI	GACGC	1 cut(s)	240
CsiI	ACCWGGT	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	440
CviAII	CATG	4 cut(s)	248, 450, 488, 552
CviQI	GTAC	1 cut(s)	440
DdeI	CTNAG	5 cut(s)	65, 105, 128, 321, 348
Eco130I	CCWWGG	1 cut(s)	626
Eco32I	GATATC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	493
Eco57I	CTGAAG	1 cut(s)	573
EcoRII	CCWGG	3 cut(s)	84, 160, 416
EcoRV	GATATC	1 cut(s)	241
EcoT14I	CCWWGG	1 cut(s)	626
EcoT22I	ATGCAT	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	626
FaeI	CATG	4 cut(s)	251, 453, 491, 555
FatI	CATG	4 cut(s)	247, 449, 487, 551
Fnu4HI	GCNGC	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	290
GluI	GCNGC	1 cut(s)	267
HgaI	GACGC	1 cut(s)	240
Hin1II	CATG	4 cut(s)	251, 453, 491, 555
HincII	GTYRAC	1 cut(s)	522
HindII	GTYRAC	1 cut(s)	522
HinfI	GANTC	1 cut(s)	27
HphI	GGTGA	3 cut(s)	373, 394, 574
Hpy166II	GTNNAC	2 cut(s)	330, 522
Hpy188III	TCNNGA	3 cut(s)	200, 488, 591
Hpy8I	GTNNAC	2 cut(s)	330, 522
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	6 cut(s)	56, 227, 266, 453, 473, 536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	5 cut(s)	65, 105, 128, 321, 348
HpySE526I	ACGT	1 cut(s)	411
Hsp92II	CATG	4 cut(s)	251, 453, 491, 555
Lsp1109I	GCAGC	1 cut(s)	278
MabI	ACCWGGT	1 cut(s)	160
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	2 cut(s)	382, 616
MboII	GAAGA	3 cut(s)	22, 181, 561
MluCI	AATT	4 cut(s)	8, 186, 215, 458
MnlI	CCTC	5 cut(s)	15, 70, 315, 364, 484
Mph1103I	ATGCAT	1 cut(s)	58
MseI	TTAA	2 cut(s)	111, 634
MspR9I	CCNGG	3 cut(s)	86, 162, 418
MvaI	CCWGG	3 cut(s)	86, 162, 418
MwoI	GCNNNNNNNGC	1 cut(s)	86
NlaIII	CATG	4 cut(s)	251, 453, 491, 555
NmuCI	GTSAC	1 cut(s)	382
NsiI	ATGCAT	1 cut(s)	58
NspI	RCATGY	1 cut(s)	453
PaeI	GCATGC	1 cut(s)	453
PagI	TCATGA	1 cut(s)	487
PfeI	GAWTC	1 cut(s)	27
PkrI	GCNGC	1 cut(s)	268
Psp6I	CCWGG	3 cut(s)	84, 160, 416
PspGI	CCWGG	3 cut(s)	84, 160, 416
PspPI	GGNCC	1 cut(s)	493
PstI	CTGCAG	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	80
RsaI	GTAC	1 cut(s)	441
RsaNI	GTAC	1 cut(s)	440
SaqAI	TTAA	2 cut(s)	111, 634
SatI	GCNGC	1 cut(s)	267
Sau96I	GGNCC	1 cut(s)	493
ScaI	AGTACT	1 cut(s)	441
ScrFI	CCNGG	3 cut(s)	86, 162, 418
SexAI	ACCWGGT	1 cut(s)	160
SfcI	CTRYAG	1 cut(s)	264
SinI	GGWCC	1 cut(s)	493
SphI	GCATGC	1 cut(s)	453
Sse9I	AATT	4 cut(s)	8, 186, 215, 458
SspI	AATATT	1 cut(s)	211
SspMI	CTAG	1 cut(s)	290
StyD4I	CCNGG	3 cut(s)	84, 160, 416
StyI	CCWWGG	1 cut(s)	626
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	1 cut(s)	543
TasI	AATT	4 cut(s)	8, 186, 215, 458
TatI	WGTACW	1 cut(s)	439
TfiI	GAWTC	1 cut(s)	27
Tru1I	TTAA	2 cut(s)	111, 634
Tru9I	TTAA	2 cut(s)	111, 634
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	382
TspDTI	ATGAA	3 cut(s)	17, 113, 451
TspRI	CASTG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	493
XapI	RAATTY	1 cut(s)	458
XceI	RCATGY	1 cut(s)	453
XspI	CTAG	1 cut(s)	290
ZrmI	AGTACT	1 cut(s)	441
Zsp2I	ATGCAT	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.