Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009584

Physical Location & Seq

Genomic Coordinates Reverse (-)

5632234 .. 5639556

Gene Structure 7323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G078300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGGCAACCTCTAAGATTTTGGTCTTCTCCATATTCTTAGCCCTATTATTCAGCAGAATTACGGCAGACCCACCGCTTCCAAACGACGGCGCTTCCGCTTCTGCTCCAGAGGTTGCTGGTTCGTCTCTGAAACTGAAACTTGAGTTACTCCAATTGAAGGTTTCACTTCTAGAATCAAGCCTTGATGAGAAAAACCGTGAACTGAAAGAAAAGGATGAAAGTATTAGACAGATGGAGAAGATTATTCAAGAGAAATCAAACAGCATTGCATTAATACAAAGTGGGATAGAGTCTGTCCAGGGAAGAGACTCTTTAGATGTTGTGGAACTTACAGATAAGTCACATGTGCAGGCTGGTGGGCTTGAGAAGCAGGTTAAAAGACTTAGAGAGGACATCATAATGCAAAATAAGAGAAAAGATGAACTGGAAACCCGAGCAAGTATAGCTGAGCAGAAAATCCGTGAACTGAGTTTGAAATTAGAAAATCTTCAAAAAGTTAGTGATGGACAGAAGATCGGAATTCGCCGAACTGAACGTGATCTTCAAGTGGCAGAGGAAGAAATGATGAAGGAAAAATTTGGGATCTCTTCGATATCTAGAGATTTGACAGAGGCCCATGGAGGATGGCTTCTGCATACGTTTGCAGTTCATATAGGCAATTTTCAGTCATACATCGTGACTTACTGGAACGAGCTTGGAAGACCAGCCTTGGATCTGGGAATTGAAAAGGCCTTAGAGATAAAAACTCAAGTTGAGGTTTGGGCTGAGCTCAACATTGAAAGCATCAGAACAGAACATTGCAGAAAGTGTCATGTGGAGCTTTCATTCCAGTTTCAAGATGTTTATAATAAATGGATCCCAAGTTTGAAGAAACAGTCTTTTGCATTTATAGCCTGTCTTAAACCACATATTCAGTCCATCGCTACAAATACTGTTGATGTCTATCATTCATCAAAGAGATCTATAGCACCACTTGTTTTCAAGGTGCAAAAGTTGGCAGATCCTTACATTCAGGAAGCTAAGAAATTTACCGACCCATACATTGATCAGGTTGCAATGGTGACAAGACCACATTTCGATAAAGTATCTGTTGTCCTGCAGCCGTGTGCAGAAAAAGTAATCTATGCATATGGACAATTCATCAGAACTGCAACGTTTTACCATCATGAGGTTGAAGAAATGCTAAAAGGTAATGAGTTCACGCAATCACTTGCAAGTATGGAAGTGGCATGGTTTGCGGCCGCTGCTTTACTAGCCTTGCCCGCAGTTTTCCTGTTTAAGTTGTATTCGGCTATTTTCAGAAAAAAGACAAAGAAGCGTAGTTATAGTTCCCAAGAAAACCACACACGTCGCAGGCTCAAGCGTGCCTATCCTGCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

461

Amino Acids

52.5

Weight (kDa)

9.01

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30090
fragaria_vesca	FvH4_4g07490 FvH4_4g07490 FvH4_4g07490
malus_domestica	MD16G1251700.v1.1
prunus_persica	Prupe.1G078300_v2.0.a1 Prupe.1G078300_v2.0.a1 Prupe.1G078300_v2.0.a1 Prupe.1G078300_v2.0.a1 Prupe.1G078300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0399971
rosa_laevigata	RLG00000009223
rosa_roxburghii	Rroxscaffold_5G00344870 Rroxscaffold_5G00344890
rosa_rugosa	Rorug04G0021900
rosa_samantha	Rh4AG097500 Rh4BG095400 Rh4BG095500 Rh4CG106700 Rh4DG092400
rosa_wichuraiana	Rw4G008080 Rw4G008090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	846
Acc36I	ACCTGC	1 cut(s)	361
AciI	CCGC	5 cut(s)	74, 96, 1238, 1242, 1263
AclI	AACGTT	1 cut(s)	1154
AclWI	GGATC	5 cut(s)	590, 720, 850, 863, 995
AcoI	YGGCCR	1 cut(s)	1239
AcsI	RAATTY	3 cut(s)	519, 575, 1025
AfiI	CCNNNNNNNGG	3 cut(s)	86, 157, 1168
AflIII	ACRYGT	2 cut(s)	343, 1346
AjiI	CACGTC	1 cut(s)	1349
AjnI	CCWGG	1 cut(s)	297
AluBI	AGCT	5 cut(s)	446, 694, 769, 820, 1019
AluI	AGCT	5 cut(s)	446, 694, 769, 820, 1019
Alw21I	GWGCWC	1 cut(s)	771
Alw26I	GTCTC	2 cut(s)	129, 300
AlwI	GGATC	5 cut(s)	590, 720, 850, 863, 995
Ama87I	CYCGRG	1 cut(s)	432
AoxI	GGCC	3 cut(s)	612, 729, 1239
ApeKI	GCWGC	2 cut(s)	1099, 1244
ApoI	RAATTY	3 cut(s)	519, 575, 1025
AseI	ATTAAT	1 cut(s)	272
Asp700I	GAANNNNTTC	1 cut(s)	486
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	1 cut(s)	613
AsuHPI	GGTGA	1 cut(s)	1072
AvaI	CYCGRG	1 cut(s)	432
BamHI	GGATCC	1 cut(s)	855
BanII	GRGCYC	1 cut(s)	771
BbsI	GAAGAC	2 cut(s)	16, 706
Bbv12I	GWGCWC	1 cut(s)	771
BbvI	GCAGC	2 cut(s)	1111, 1231
BccI	CCATC	5 cut(s)	226, 497, 618, 926, 1170
BceAI	ACGGC	3 cut(s)	78, 103, 1087
BciT130I	CCWGG	1 cut(s)	299
BclI	TGATCA	1 cut(s)	1045
BcoDI	GTCTC	2 cut(s)	129, 300
BfaI	CTAG	3 cut(s)	170, 597, 1253
BfmI	CTRYAG	2 cut(s)	963, 1097
BfoI	RGCGCY	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	361
BglII	AGATCT	1 cut(s)	959
BisI	GCNGC	4 cut(s)	1100, 1239, 1242, 1245
BlpI	GCTNAGC	2 cut(s)	447, 765
BlsI	GCNGC	4 cut(s)	1101, 1240, 1243, 1246
Bme1390I	CCNGG	1 cut(s)	299
BmeT110I	CYCGRG	1 cut(s)	432
BmgBI	CACGTC	1 cut(s)	1349
BmgT120I	GGNCC	1 cut(s)	613
BmiI	GGNNCC	1 cut(s)	857
BmrFI	CCNGG	1 cut(s)	299
BmsI	GCATC	1 cut(s)	792
BpiI	GAAGAC	2 cut(s)	16, 706
BpmI	CTGGAG	1 cut(s)	90
Bpu1102I	GCTNAGC	2 cut(s)	447, 765
BpuEI	CTTGAG	4 cut(s)	161, 383, 732, 1343
BsaBI	GATNNNNATC	1 cut(s)	942
BsaJI	CCNNGG	3 cut(s)	298, 616, 708
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 157, 1168
Bse1I	ACTGG	3 cut(s)	429, 689, 829
Bse3DI	GCAATG	3 cut(s)	264, 796, 1062
Bse8I	GATNNNNATC	1 cut(s)	942
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	3 cut(s)	298, 616, 708
BseGI	GGATG	2 cut(s)	220, 629
BseJI	GATNNNNATC	1 cut(s)	942
BseLI	CCNNNNNNNGG	3 cut(s)	86, 157, 1168
BseMI	GCAATG	3 cut(s)	264, 796, 1062
BseMII	CTCAG	3 cut(s)	438, 458, 756
BseNI	ACTGG	3 cut(s)	429, 689, 829
BseX3I	CGGCCG	1 cut(s)	1239
BseXI	GCAGC	2 cut(s)	1111, 1231
BsgI	GTGCAG	2 cut(s)	368, 1128
Bsh1285I	CGRYCG	1 cut(s)	1242
BshFI	GGCC	3 cut(s)	614, 731, 1241
BsiEI	CGRYCG	1 cut(s)	1242
BsiHKAI	GWGCWC	1 cut(s)	771
BsiHKCI	CYCGRG	1 cut(s)	432
BslI	CCNNNNNNNGG	3 cut(s)	86, 157, 1168
BsmAI	GTCTC	2 cut(s)	129, 300
BsmBI	CGTCTC	1 cut(s)	129
BsnI	GGCC	3 cut(s)	614, 731, 1241
BsoBI	CYCGRG	1 cut(s)	432
Bsp1286I	GDGCHC	1 cut(s)	771
Bsp143I	GATC	8 cut(s)	513, 538, 582, 712, 855, 959, 1000, 1045
Bsp1720I	GCTNAGC	2 cut(s)	447, 765
Bsp19I	CCATGG	1 cut(s)	616
BspACI	CCGC	5 cut(s)	74, 96, 1238, 1242, 1263
BspANI	GGCC	3 cut(s)	614, 731, 1241
BspCNI	CTCAG	3 cut(s)	439, 459, 757
BspHI	TCATGA	1 cut(s)	1165
BspLI	GGNNCC	1 cut(s)	857
BspMAI	CTGCAG	1 cut(s)	1101
BspMI	ACCTGC	1 cut(s)	361
BspPI	GGATC	5 cut(s)	590, 720, 850, 863, 995
BsrDI	GCAATG	3 cut(s)	264, 796, 1062
BsrI	ACTGG	3 cut(s)	429, 689, 829
BssECI	CCNNGG	3 cut(s)	298, 616, 708
BssMI	GATC	8 cut(s)	513, 538, 582, 712, 855, 959, 1000, 1045
BssT1I	CCWWGG	2 cut(s)	616, 708
Bst2UI	CCWGG	1 cut(s)	299
Bst4CI	ACNGT	3 cut(s)	197, 876, 934
Bst6I	CTCTTC	2 cut(s)	298, 592
BstAPI	GCANNNNNTGC	1 cut(s)	1235
BstC8I	GCNNGC	4 cut(s)	351, 1263, 1355, 1365
BstDEI	CTNAG	8 cut(s)	12, 37, 383, 447, 467, 733, 765, 1020
BstDSI	CCRYGG	1 cut(s)	616
BstF5I	GGATG	2 cut(s)	220, 629
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	8 cut(s)	516, 541, 585, 715, 858, 962, 1003, 1048
BstMAI	GTCTC	2 cut(s)	129, 300
BstMBI	GATC	8 cut(s)	513, 538, 582, 712, 855, 959, 1000, 1045
BstMCI	CGRYCG	1 cut(s)	1242
BstMWI	GCNNNNNNNGC	8 cut(s)	367, 443, 890, 1235, 1244, 1253, 1262, 1373
BstNI	CCWGG	1 cut(s)	299
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	297
BstSFI	CTRYAG	2 cut(s)	963, 1097
BstV1I	GCAGC	2 cut(s)	1111, 1231
BstV2I	GAAGAC	2 cut(s)	16, 706
BstX2I	RGATCY	5 cut(s)	582, 712, 855, 959, 1000
BstYI	RGATCY	5 cut(s)	582, 712, 855, 959, 1000
BstZI	CGGCCG	1 cut(s)	1239
BsuRI	GGCC	3 cut(s)	614, 731, 1241
BtgI	CCRYGG	1 cut(s)	616
BtgZI	GCGATG	1 cut(s)	904
BtrI	CACGTC	1 cut(s)	1349
BtsCI	GGATG	2 cut(s)	220, 629
BveI	ACCTGC	1 cut(s)	361
Cac8I	GCNNGC	4 cut(s)	351, 1263, 1355, 1365
CciI	TCATGA	1 cut(s)	1165
CciNI	GCGGCCGC	1 cut(s)	1239
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	1 cut(s)	613
CviAII	CATG	5 cut(s)	344, 617, 812, 1166, 1230
DdeI	CTNAG	8 cut(s)	12, 37, 383, 447, 467, 733, 765, 1020
DpnI	GATC	8 cut(s)	515, 540, 584, 714, 857, 961, 1002, 1047
DpnII	GATC	8 cut(s)	513, 538, 582, 712, 855, 959, 1000, 1045
EaeI	YGGCCR	1 cut(s)	1239
EagI	CGGCCG	1 cut(s)	1239
Eam1104I	CTCTTC	2 cut(s)	298, 592
EarI	CTCTTC	2 cut(s)	298, 592
Ecl136II	GAGCTC	1 cut(s)	769
EclXI	CGGCCG	1 cut(s)	1239
Eco130I	CCWWGG	2 cut(s)	616, 708
Eco147I	AGGCCT	1 cut(s)	731
Eco24I	GRGCYC	1 cut(s)	771
Eco32I	GATATC	1 cut(s)	594
Eco52I	CGGCCG	1 cut(s)	1239
Eco53kI	GAGCTC	1 cut(s)	769
Eco88I	CYCGRG	1 cut(s)	432
EcoICRI	GAGCTC	1 cut(s)	769
EcoRI	GAATTC	1 cut(s)	519
EcoRII	CCWGG	1 cut(s)	297
EcoRV	GATATC	1 cut(s)	594
EcoT14I	CCWWGG	2 cut(s)	616, 708
EcoT22I	ATGCAT	1 cut(s)	1129
EcoT38I	GRGCYC	1 cut(s)	771
ErhI	CCWWGG	2 cut(s)	616, 708
Esp3I	CGTCTC	1 cut(s)	129
FaeI	CATG	5 cut(s)	347, 620, 815, 1169, 1233
FalI	AAGNNNNNCTT	2 cut(s)	295, 327
FatI	CATG	5 cut(s)	343, 616, 811, 1165, 1229
FauI	CCCGC	1 cut(s)	1270
FauNDI	CATATG	1 cut(s)	1129
FbaI	TGATCA	1 cut(s)	1045
Fnu4HI	GCNGC	4 cut(s)	1100, 1239, 1242, 1245
FokI	GGATG	2 cut(s)	227, 636
FriOI	GRGCYC	1 cut(s)	771
Fsp4HI	GCNGC	4 cut(s)	1100, 1239, 1242, 1245
FspBI	CTAG	3 cut(s)	170, 597, 1253
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	4 cut(s)	1100, 1239, 1242, 1245
GsuI	CTGGAG	1 cut(s)	90
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	3 cut(s)	614, 731, 1241
HhaI	GCGC	1 cut(s)	92
Hin1II	CATG	5 cut(s)	347, 620, 815, 1169, 1233
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HinfI	GANTC	3 cut(s)	173, 290, 308
HphI	GGTGA	1 cut(s)	1072
Hpy166II	GTNNAC	3 cut(s)	200, 464, 1200
Hpy188I	TCNGA	5 cut(s)	129, 518, 788, 1145, 1301
Hpy188III	TCNNGA	8 cut(s)	107, 170, 248, 597, 676, 836, 1013, 1166
Hpy8I	GTNNAC	3 cut(s)	200, 464, 1200
Hpy99I	CGWCG	2 cut(s)	89, 1353
HpyAV	CCTTC	2 cut(s)	151, 562
HpyCH4III	ACNGT	3 cut(s)	197, 876, 934
HpyCH4IV	ACGT	4 cut(s)	535, 638, 1154, 1348
HpyF10VI	GCNNNNNNNGC	8 cut(s)	367, 443, 890, 1235, 1244, 1253, 1262, 1373
HpyF3I	CTNAG	8 cut(s)	12, 37, 383, 447, 467, 733, 765, 1020
HpySE526I	ACGT	4 cut(s)	535, 638, 1154, 1348
Hsp92II	CATG	5 cut(s)	347, 620, 815, 1169, 1233
HspAI	GCGC	1 cut(s)	90
Ksp22I	TGATCA	1 cut(s)	1045
Kzo9I	GATC	8 cut(s)	513, 538, 582, 712, 855, 959, 1000, 1045
LmnI	GCTCC	2 cut(s)	109, 817
Lsp1109I	GCAGC	2 cut(s)	1111, 1231
LweI	GCATC	1 cut(s)	792
MaeI	CTAG	3 cut(s)	170, 597, 1253
MaeII	ACGT	4 cut(s)	535, 638, 1154, 1348
MaeIII	GTNAC	4 cut(s)	144, 339, 676, 1060
MalI	GATC	8 cut(s)	515, 540, 584, 714, 857, 961, 1002, 1047
MboI	GATC	8 cut(s)	513, 538, 582, 712, 855, 959, 1000, 1045
MfeI	CAATTG	1 cut(s)	152
MflI	RGATCY	5 cut(s)	582, 712, 855, 959, 1000
MhlI	GDGCHC	1 cut(s)	771
MluCI	AATT	9 cut(s)	57, 152, 476, 519, 575, 658, 720, 1025, 1136
MlyI	GAGTC	2 cut(s)	299, 302
MnlI	CCTC	8 cut(s)	19, 103, 382, 547, 604, 614, 748, 1162
Mph1103I	ATGCAT	1 cut(s)	1129
MroXI	GAANNNNTTC	1 cut(s)	486
MseI	TTAA	4 cut(s)	272, 375, 900, 1278
MslI	CAYNNNNRTG	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	1244
MspR9I	CCNGG	1 cut(s)	299
MunI	CAATTG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	299
MwoI	GCNNNNNNNGC	8 cut(s)	367, 443, 890, 1235, 1244, 1253, 1262, 1373
NcoI	CCATGG	1 cut(s)	616
NdeI	CATATG	1 cut(s)	1129
NdeII	GATC	8 cut(s)	513, 538, 582, 712, 855, 959, 1000, 1045
NlaIII	CATG	5 cut(s)	347, 620, 815, 1169, 1233
NlaIV	GGNNCC	1 cut(s)	857
NmuCI	GTSAC	3 cut(s)	339, 676, 1060
NotI	GCGGCCGC	1 cut(s)	1239
NsiI	ATGCAT	1 cut(s)	1129
NspI	RCATGY	1 cut(s)	347
PagI	TCATGA	1 cut(s)	1165
PceI	AGGCCT	1 cut(s)	731
PciI	ACATGT	1 cut(s)	343
PdmI	GAANNNNTTC	1 cut(s)	486
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	4 cut(s)	1101, 1240, 1243, 1246
PleI	GAGTC	2 cut(s)	298, 302
PpsI	GAGTC	2 cut(s)	298, 302
PscI	ACATGT	1 cut(s)	343
PshBI	ATTAAT	1 cut(s)	272
PsiI	TTATAA	1 cut(s)	846
Psp124BI	GAGCTC	1 cut(s)	771
Psp1406I	AACGTT	1 cut(s)	1154
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	857
PspPI	GGNCC	1 cut(s)	613
PsrI	GAACNNNNNNTAC	2 cut(s)	1312, 1344
PstI	CTGCAG	1 cut(s)	1101
PsuI	RGATCY	5 cut(s)	582, 712, 855, 959, 1000
RseI	CAYNNNNRTG	1 cut(s)	398
SacI	GAGCTC	1 cut(s)	771
SaqAI	TTAA	4 cut(s)	272, 375, 900, 1278
SatI	GCNGC	4 cut(s)	1100, 1239, 1242, 1245
Sau3AI	GATC	8 cut(s)	513, 538, 582, 712, 855, 959, 1000, 1045
Sau96I	GGNCC	1 cut(s)	613
SchI	GAGTC	2 cut(s)	299, 302
ScrFI	CCNGG	1 cut(s)	299
SduI	GDGCHC	1 cut(s)	771
SfaNI	GCATC	1 cut(s)	792
SfcI	CTRYAG	2 cut(s)	963, 1097
SmiMI	CAYNNNNRTG	1 cut(s)	398
SmlI	CTYRAG	4 cut(s)	140, 362, 747, 1358
SmoI	CTYRAG	4 cut(s)	140, 362, 747, 1358
Sse9I	AATT	9 cut(s)	57, 152, 476, 519, 575, 658, 720, 1025, 1136
SseBI	AGGCCT	1 cut(s)	731
SsiI	CCGC	5 cut(s)	74, 96, 1238, 1242, 1263
SspMI	CTAG	3 cut(s)	170, 597, 1253
SstI	GAGCTC	1 cut(s)	771
StuI	AGGCCT	1 cut(s)	731
StyD4I	CCNGG	1 cut(s)	297
StyI	CCWWGG	2 cut(s)	616, 708
TaaI	ACNGT	3 cut(s)	197, 876, 934
TaiI	ACGT	4 cut(s)	538, 641, 1157, 1351
TaqI	TCGA	2 cut(s)	590, 1077
TasI	AATT	9 cut(s)	57, 152, 476, 519, 575, 658, 720, 1025, 1136
TauI	GCSGC	2 cut(s)	1241, 1244
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	4 cut(s)	272, 375, 900, 1278
Tru9I	TTAA	4 cut(s)	272, 375, 900, 1278
TseFI	GTSAC	3 cut(s)	339, 676, 1060
TseI	GCWGC	2 cut(s)	1099, 1244
Tsp45I	GTSAC	3 cut(s)	339, 676, 1060
TspDTI	ATGAA	7 cut(s)	231, 435, 581, 638, 813, 939, 1129
TspGWI	ACGGA	1 cut(s)	449
VspI	ATTAAT	1 cut(s)	272
XapI	RAATTY	3 cut(s)	519, 575, 1025
XbaI	TCTAGA	2 cut(s)	169, 596
XceI	RCATGY	1 cut(s)	347
XmnI	GAANNNNTTC	1 cut(s)	486
XspI	CTAG	3 cut(s)	170, 597, 1253
Zsp2I	ATGCAT	1 cut(s)	1129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.