AT4G32605

BEST Arabidopsis thaliana protein match is mitochondrial glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012515
Physical Location & Seq
Reverse (-)
15726201 .. 15727977
1777 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G32605.1

Sequence Viewer

Length: 684 bp
ATGTGGAGAAGAGTGATCGGAAATGTCGCCGTCCGGCATCAATTACAGCGAGCGCTATCTAGTAAAGCCGGTGGAAGTGGAAAGAGCGCCAACGTTTCAGCTGCAGTGGATTCGATGCTTCTGCGTTCCCTCAAGGAACATTACTTAGAGGTTTCTAAGATGACTCCTCCTCCGAAAGTGAGTCCTCCGTCACCATTTGAGATTGTGAAAGGGTCGCTTGAAGGAAGTACTGGTGCTGTTCTGAAGAAATCTGTTGGAAATGAAGAGATCAATCTTTTCGTTATGCGCTTGGCTCACGGAGGTGATGAAGAAGACGATGGTGGGATCAACCAGTTGTTCCTTCATGTTGCTGTATCAAAGCCAAATCAGCCTGATTCTTTGCATTTCCTTTGTGGCCTTTACCCTGATGCATTGGGTATTCATTCTGTTTCCATGAGGCCAAAACTTGAGGCTTTGGAGATGTCTGATGATCCTACTCAATACACAGGCCCTTCTTTTGAAGAGCTCGATGAGAAGATGAGAGATGTATTCCATGGATTCCTAGAGGAACGAGGTGTGAACGAGAGTCTCTTCCCCTTTCTTCAGGCATGGCTCTATGTAAAGGATCACCGTAACCTACTGCGATGGTTCAAATCAGTTGGCACGTTTGTTCATGAAAACCCATCTGCAGAAAACACCGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

227

Amino Acids

25.17

Weight (kDa)

5.99

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 65 - 217 2.6e-22 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32605
fragaria_vesca FvH4_7g05420 FvH4_7g05420 FvH4_7g05470 FvH4_7g05470
malus_domestica MD02G1258000.v1.1
prunus_persica Prupe.2G074600_v2.0.a1
pyrus_communis pycom02g21920 pycom07g04810
rosa_chinensis RchiOBHm_Chr1g0332231
rosa_laevigata RLG00000029684
rosa_multiflora Rmu_sc0000733.1_g000003
rosa_roxburghii Rroxscaffold_4G00318340
rosa_rugosa Rorug01G0099100
rosa_samantha Rh1AG122900 Rh1BG094000 Rh1CG117500 Rh1DG128300
rosa_wichuraiana Rw1G010020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 678
AclI AACGTT 1 cut(s) 93
AclWI GGATC 3 cut(s) 332, 464, 612
AcuI CTGAAG 2 cut(s) 263, 566
AfaI GTAC 1 cut(s) 229
AfeI AGCGCT 1 cut(s) 54
AgsI TTSAA 3 cut(s) 221, 500, 631
AleI CACNNNNGTG 1 cut(s) 300
AluBI AGCT 2 cut(s) 101, 505
AluI AGCT 2 cut(s) 101, 505
Alw21I GWGCWC 1 cut(s) 507
Alw26I GTCTC 1 cut(s) 572
AlwI GGATC 3 cut(s) 332, 464, 612
Aor51HI AGCGCT 1 cut(s) 54
AoxI GGCC 3 cut(s) 394, 437, 487
ApeKI GCWGC 1 cut(s) 101
AspLEI GCGC 3 cut(s) 55, 89, 288
AspS9I GGNCC 1 cut(s) 488
AsuHPI GGTGA 3 cut(s) 183, 314, 599
BanII GRGCYC 1 cut(s) 507
BbsI GAAGAC 1 cut(s) 318
Bbv12I GWGCWC 1 cut(s) 507
BbvI GCAGC 1 cut(s) 88
BccI CCATC 3 cut(s) 311, 618, 670
BceAI ACGGC 1 cut(s) 14
BcgI CGANNNNNNTGC 4 cut(s) 93, 103, 127, 137
BcoDI GTCTC 1 cut(s) 572
BfaI CTAG 3 cut(s) 60, 542, 682
BfmI CTRYAG 2 cut(s) 102, 666
BfoI RGCGCY 2 cut(s) 56, 90
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
BmcAI AGTACT 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 488
BmsI GCATC 3 cut(s) 46, 105, 397
BpiI GAAGAC 1 cut(s) 318
BpuEI CTTGAG 2 cut(s) 116, 467
BsaJI CCNNGG 1 cut(s) 532
BsaXI ACNNNNNCTCC 2 cut(s) 154, 184
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 2 cut(s) 235, 331
BseDI CCNNGG 1 cut(s) 532
BseNI ACTGG 2 cut(s) 235, 331
BseRI GAGGAG 2 cut(s) 156, 159
BseXI GCAGC 1 cut(s) 88
BshFI GGCC 3 cut(s) 396, 439, 489
BsiHKAI GWGCWC 1 cut(s) 507
BsiSI CCGG 2 cut(s) 34, 69
BsmAI GTCTC 1 cut(s) 572
BsnI GGCC 3 cut(s) 396, 439, 489
Bsp1286I GDGCHC 1 cut(s) 507
Bsp143I GATC 5 cut(s) 15, 267, 324, 469, 604
Bsp19I CCATGG 1 cut(s) 532
BspACI CCGC 1 cut(s) 678
BspANI GGCC 3 cut(s) 396, 439, 489
BspHI TCATGA 1 cut(s) 652
BspMAI CTGCAG 2 cut(s) 106, 670
BspPI GGATC 3 cut(s) 332, 464, 612
BspQI GCTCTTC 1 cut(s) 495
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 2 cut(s) 235, 331
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 532
BssMI GATC 5 cut(s) 15, 267, 324, 469, 604
BssT1I CCWWGG 1 cut(s) 532
Bst4CI ACNGT 1 cut(s) 611
Bst6I CTCTTC 4 cut(s) 4, 258, 495, 575
BstC8I GCNNGC 1 cut(s) 51
BstDEI CTNAG 2 cut(s) 145, 156
BstDSI CCRYGG 1 cut(s) 532
BstH2I RGCGCY 2 cut(s) 56, 90
BstHHI GCGC 3 cut(s) 55, 89, 288
BstKTI GATC 5 cut(s) 18, 270, 327, 472, 607
BstMAI GTCTC 1 cut(s) 572
BstMBI GATC 5 cut(s) 15, 267, 324, 469, 604
BstMWI GCNNNNNNNGC 1 cut(s) 367
BstSFI CTRYAG 2 cut(s) 102, 666
BstV1I GCAGC 1 cut(s) 88
BstV2I GAAGAC 1 cut(s) 318
BsuRI GGCC 3 cut(s) 396, 439, 489
BtgI CCRYGG 1 cut(s) 532
BtgZI GCGATG 1 cut(s) 637
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 51
CciI TCATGA 1 cut(s) 652
CfoI GCGC 3 cut(s) 55, 89, 288
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 488
Csp6I GTAC 1 cut(s) 228
CviAII CATG 5 cut(s) 344, 433, 533, 588, 653
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 2 cut(s) 145, 156
DpnI GATC 5 cut(s) 17, 269, 326, 471, 606
DpnII GATC 5 cut(s) 15, 267, 324, 469, 604
Eam1104I CTCTTC 4 cut(s) 4, 258, 495, 575
EarI CTCTTC 4 cut(s) 4, 258, 495, 575
Ecl136II GAGCTC 1 cut(s) 505
Eco130I CCWWGG 1 cut(s) 532
Eco24I GRGCYC 1 cut(s) 507
Eco47III AGCGCT 1 cut(s) 54
Eco53kI GAGCTC 1 cut(s) 505
Eco57I CTGAAG 2 cut(s) 263, 566
EcoICRI GAGCTC 1 cut(s) 505
EcoO109I RGGNCCY 1 cut(s) 488
EcoT14I CCWWGG 1 cut(s) 532
EcoT22I ATGCAT 1 cut(s) 412
EcoT38I GRGCYC 1 cut(s) 507
ErhI CCWWGG 1 cut(s) 532
FaeI CATG 5 cut(s) 347, 436, 536, 591, 656
FaiI YATR 7 cut(s) 284, 345, 434, 534, 589, 597, 654
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FatI CATG 5 cut(s) 343, 432, 532, 587, 652
Fnu4HI GCNGC 1 cut(s) 102
FriOI GRGCYC 1 cut(s) 507
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 3 cut(s) 60, 542, 682
GlaI GCGC 3 cut(s) 54, 88, 287
GluI GCNGC 1 cut(s) 102
HaeII RGCGCY 2 cut(s) 56, 90
HaeIII GGCC 3 cut(s) 396, 439, 489
HapII CCGG 2 cut(s) 34, 69
HhaI GCGC 3 cut(s) 55, 89, 288
Hin1II CATG 5 cut(s) 347, 436, 536, 591, 656
Hin6I GCGC 3 cut(s) 53, 87, 286
HinP1I GCGC 3 cut(s) 53, 87, 286
HinfI GANTC 6 cut(s) 110, 163, 181, 374, 537, 565
HpaII CCGG 2 cut(s) 34, 69
HphI GGTGA 3 cut(s) 183, 314, 599
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 4 cut(s) 20, 174, 243, 466
Hpy188III TCNNGA 1 cut(s) 653
Hpy8I GTNNAC 1 cut(s) 559
HpyAV CCTTC 3 cut(s) 215, 350, 501
HpyCH4III ACNGT 1 cut(s) 611
HpyCH4IV ACGT 2 cut(s) 93, 644
HpyCH4V TGCA 4 cut(s) 104, 382, 410, 668
HpyF10VI GCNNNNNNNGC 1 cut(s) 367
HpyF3I CTNAG 2 cut(s) 145, 156
HpySE526I ACGT 2 cut(s) 93, 644
Hsp92II CATG 5 cut(s) 347, 436, 536, 591, 656
HspAI GCGC 3 cut(s) 53, 87, 286
Kzo9I GATC 5 cut(s) 15, 267, 324, 469, 604
LguI GCTCTTC 1 cut(s) 495
LpnPI CCDG 8 cut(s) 47, 82, 216, 344, 384, 417, 471, 569
Lsp1109I GCAGC 1 cut(s) 88
LweI GCATC 3 cut(s) 46, 105, 397
MaeI CTAG 3 cut(s) 60, 542, 682
MaeII ACGT 2 cut(s) 93, 644
MaeIII GTNAC 2 cut(s) 189, 611
MalI GATC 5 cut(s) 17, 269, 326, 471, 606
MboI GATC 5 cut(s) 15, 267, 324, 469, 604
MboII GAAGA 9 cut(s) 21, 256, 275, 320, 323, 512, 526, 562, 572
MhlI GDGCHC 1 cut(s) 507
MluCI AATT 1 cut(s) 41
MlyI GAGTC 3 cut(s) 157, 190, 574
MmeI TCCRAC 1 cut(s) 235
Mph1103I ATGCAT 1 cut(s) 412
MslI CAYNNNNRTG 1 cut(s) 300
MspA1I CMGCKG 1 cut(s) 101
MspI CCGG 2 cut(s) 34, 69
MwoI GCNNNNNNNGC 1 cut(s) 367
NcoI CCATGG 1 cut(s) 532
NdeII GATC 5 cut(s) 15, 267, 324, 469, 604
NlaIII CATG 5 cut(s) 347, 436, 536, 591, 656
NmuCI GTSAC 1 cut(s) 189
NsiI ATGCAT 1 cut(s) 412
OliI CACNNNNGTG 1 cut(s) 300
PagI TCATGA 1 cut(s) 652
PciSI GCTCTTC 1 cut(s) 495
PfeI GAWTC 3 cut(s) 110, 374, 537
PkrI GCNGC 1 cut(s) 103
PleI GAGTC 3 cut(s) 157, 189, 573
PpsI GAGTC 3 cut(s) 157, 189, 573
Psp124BI GAGCTC 1 cut(s) 507
Psp1406I AACGTT 1 cut(s) 93
PspPI GGNCC 1 cut(s) 488
PstI CTGCAG 2 cut(s) 106, 670
PvuII CAGCTG 1 cut(s) 101
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
RseI CAYNNNNRTG 1 cut(s) 300
SacI GAGCTC 1 cut(s) 507
SapI GCTCTTC 1 cut(s) 495
SatI GCNGC 1 cut(s) 102
Sau3AI GATC 5 cut(s) 15, 267, 324, 469, 604
Sau96I GGNCC 1 cut(s) 488
ScaI AGTACT 1 cut(s) 229
SchI GAGTC 3 cut(s) 157, 190, 574
SduI GDGCHC 1 cut(s) 507
SetI ASST 8 cut(s) 96, 103, 153, 304, 507, 556, 618, 647
SfaNI GCATC 3 cut(s) 46, 105, 397
SfcI CTRYAG 2 cut(s) 102, 666
SmiMI CAYNNNNRTG 1 cut(s) 300
SmlI CTYRAG 2 cut(s) 131, 446
SmoI CTYRAG 2 cut(s) 131, 446
Sse9I AATT 1 cut(s) 41
SsiI CCGC 1 cut(s) 678
SspMI CTAG 3 cut(s) 60, 542, 682
SstI GAGCTC 1 cut(s) 507
StyI CCWWGG 1 cut(s) 532
TaaI ACNGT 1 cut(s) 611
TaiI ACGT 2 cut(s) 96, 647
TaqI TCGA 2 cut(s) 113, 507
TasI AATT 1 cut(s) 41
TatI WGTACW 1 cut(s) 227
TfiI GAWTC 3 cut(s) 110, 374, 537
TscAI CASTG 1 cut(s) 111
TseFI GTSAC 1 cut(s) 189
TseI GCWGC 1 cut(s) 101
Tsp45I GTSAC 1 cut(s) 189
TspDTI ATGAA 6 cut(s) 276, 321, 332, 410, 641, 669
TspGWI ACGGA 2 cut(s) 177, 312
TspRI CASTG 1 cut(s) 111
XspI CTAG 3 cut(s) 60, 542, 682
ZrmI AGTACT 1 cut(s) 229
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.