Rw1G010020

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0012515
Physical Location & Seq
Reverse (-)
22247087 .. 22249920
2834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G010020.1

Sequence Viewer

Length: 702 bp
ATGAGATCAATATCAATGTGGAGGAAAGCCACAGCATTCTCAGGGTTTGGTGCCACACTGAGCCACCACCTATGCCGGCGCCACTCCACCGCCACGGCCACGGCTGTGAACTCGATGCTCCTCCGCTCCCTGAAAGAGCACTATCTGGAAGTGTCCAAAATGACCCCTCCCCCTAAAGTCAACCCTCCCTCCCCTTTCACCGTCGTCAAGGGCTCGCTCGACGGCGCCGGTCCCGTGCTCAAGCGCAGCTACGGCGACGAACAAATCAGCATATCGGTCATGCGAATGGATAATATTATTCCCGGCGCAGGTGCCGCCGCCGGAGGAGAAGACGACGACGACGACGACGACATCAACCAGTTGTTCCTACACGTCGAGGTTTCGAAGCCGGGACAGAAGGAGTCTCTGCTTTTTCTTTGTGGGCTGTATCCGGACGCCTTAGGCATTCACTCTGTCTCTATCAGGCCTTTGGCCGACGCCTCTGATTACGCTGCGCCTCGTTCTTCAGCATATACTGGCCCTCTTTTTGAAGATCTTGATGAAGGGATGAAGGATGCATTCCACAGCTACATAGAAGAGCGGGGTGTGGGTGATAGTCTTTTTCCATTTCTTCGAGCATGGCTATACGTCAAAGACCATCGTAATCTTATGCGCTGGTTTAAAACAGTAGGATCATTTGTTAATGAAACCAAGTCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

233

Amino Acids

25.65

Weight (kDa)

6.05

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 79 - 227 4.5e-24 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32605
fragaria_vesca FvH4_7g05420 FvH4_7g05420 FvH4_7g05470 FvH4_7g05470
malus_domestica MD02G1258000.v1.1
prunus_persica Prupe.2G074600_v2.0.a1
pyrus_communis pycom02g21920 pycom07g04810
rosa_chinensis RchiOBHm_Chr1g0332231
rosa_laevigata RLG00000029684
rosa_multiflora Rmu_sc0000733.1_g000003
rosa_roxburghii Rroxscaffold_4G00318340
rosa_rugosa Rorug01G0099100
rosa_samantha Rh1AG122900 Rh1BG094000 Rh1CG117500 Rh1DG128300
rosa_wichuraiana Rw1G010020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 299
Acc36I ACCTGC 1 cut(s) 299
AccB1I GGYRCC 4 cut(s) 50, 78, 224, 311
AccBSI CCGCTC 2 cut(s) 126, 580
AccIII TCCGGA 1 cut(s) 430
AciI CCGC 5 cut(s) 90, 124, 315, 318, 580
AclWI GGATC 1 cut(s) 679
AcoI YGGCCR 2 cut(s) 96, 471
AcuI CTGAAG 1 cut(s) 489
AcyI GRCGYC 4 cut(s) 79, 225, 435, 477
AfiI CCNNNNNNNGG 1 cut(s) 308
AflIII ACRYGT 1 cut(s) 370
AgsI TTSAA 1 cut(s) 530
AjiI CACGTC 1 cut(s) 373
AleI CACNNNNGTG 1 cut(s) 104
AluBI AGCT 2 cut(s) 249, 567
AluI AGCT 2 cut(s) 249, 567
Alw21I GWGCWC 2 cut(s) 141, 240
Alw26I GTCTC 2 cut(s) 408, 460
AlwI GGATC 1 cut(s) 679
Aor13HI TCCGGA 1 cut(s) 430
AoxI GGCC 4 cut(s) 96, 464, 471, 517
ApeKI GCWGC 2 cut(s) 246, 491
AspLEI GCGC 6 cut(s) 81, 227, 246, 308, 496, 654
AspS9I GGNCC 2 cut(s) 230, 518
AsuC2I CCSGG 2 cut(s) 303, 390
AsuHPI GGTGA 2 cut(s) 190, 602
AsuII TTCGAA 1 cut(s) 383
AvaII GGWCC 1 cut(s) 230
AxyI CCTNAGG 1 cut(s) 439
BanI GGYRCC 4 cut(s) 50, 78, 224, 311
BanII GRGCYC 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 336
Bbv12I GWGCWC 2 cut(s) 141, 240
BbvI GCAGC 2 cut(s) 258, 478
BccI CCATC 1 cut(s) 645
BceAI ACGGC 4 cut(s) 111, 117, 238, 268
BciVI GTATCC 1 cut(s) 438
BcnI CCSGG 2 cut(s) 303, 390
BcoDI GTCTC 2 cut(s) 408, 460
BfoI RGCGCY 2 cut(s) 82, 228
BfuAI ACCTGC 1 cut(s) 299
BfuI GTATCC 1 cut(s) 438
BglII AGATCT 1 cut(s) 532
BisI GCNGC 4 cut(s) 247, 315, 318, 492
BlsI GCNGC 4 cut(s) 248, 316, 319, 493
Bme1390I CCNGG 2 cut(s) 303, 390
Bme18I GGWCC 1 cut(s) 230
BmgBI CACGTC 1 cut(s) 373
BmgT120I GGNCC 2 cut(s) 230, 518
BmiI GGNNCC 5 cut(s) 52, 80, 226, 232, 313
BmrFI CCNGG 2 cut(s) 303, 390
BmsI GCATC 2 cut(s) 105, 544
BpiI GAAGAC 1 cut(s) 336
Bpu14I TTCGAA 1 cut(s) 383
BpuEI CTTGAG 1 cut(s) 224
BpuMI CCSGG 2 cut(s) 303, 390
BsaBI GATNNNNATC 1 cut(s) 10
BsaHI GRCGYC 4 cut(s) 79, 225, 435, 477
BsaJI CCNNGG 2 cut(s) 93, 99
BsaWI WCCGGW 1 cut(s) 430
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse118I RCCGGY 2 cut(s) 75, 227
Bse1I ACTGG 2 cut(s) 358, 520
Bse21I CCTNAGG 1 cut(s) 439
Bse8I GATNNNNATC 1 cut(s) 10
BseAI TCCGGA 1 cut(s) 430
BseDI CCNNGG 2 cut(s) 93, 99
BseGI GGATG 2 cut(s) 552, 559
BseJI GATNNNNATC 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 308
BseMII CTCAG 2 cut(s) 50, 54
BseNI ACTGG 2 cut(s) 358, 520
BseRI GAGGAG 2 cut(s) 110, 339
BseXI GCAGC 2 cut(s) 258, 478
BshFI GGCC 4 cut(s) 98, 466, 473, 519
BshNI GGYRCC 4 cut(s) 50, 78, 224, 311
BsiHKAI GWGCWC 2 cut(s) 141, 240
BsiSI CCGG 6 cut(s) 76, 228, 303, 321, 389, 431
BslFI GGGAC 2 cut(s) 216, 405
BslI CCNNNNNNNGG 1 cut(s) 308
BsmAI GTCTC 2 cut(s) 408, 460
BsmFI GGGAC 2 cut(s) 216, 405
BsmI GAATGC 3 cut(s) 35, 444, 557
BsnI GGCC 4 cut(s) 98, 466, 473, 519
Bsp119I TTCGAA 1 cut(s) 383
Bsp1286I GDGCHC 3 cut(s) 141, 215, 240
Bsp13I TCCGGA 1 cut(s) 430
Bsp143I GATC 3 cut(s) 5, 532, 671
BspACI CCGC 5 cut(s) 90, 124, 315, 318, 580
BspANI GGCC 4 cut(s) 98, 466, 473, 519
BspCNI CTCAG 2 cut(s) 51, 53
BspEI TCCGGA 1 cut(s) 430
BspLI GGNNCC 5 cut(s) 52, 80, 226, 232, 313
BspMI ACCTGC 1 cut(s) 299
BspPI GGATC 1 cut(s) 679
BspQI GCTCTTC 1 cut(s) 570
BspT104I TTCGAA 1 cut(s) 383
BspT107I GGYRCC 4 cut(s) 50, 78, 224, 311
BsrBI CCGCTC 2 cut(s) 126, 580
BsrFI RCCGGY 2 cut(s) 75, 227
BsrI ACTGG 2 cut(s) 358, 520
BssAI RCCGGY 2 cut(s) 75, 227
BssECI CCNNGG 2 cut(s) 93, 99
BssMI GATC 3 cut(s) 5, 532, 671
BssNI GRCGYC 4 cut(s) 79, 225, 435, 477
Bst4CI ACNGT 2 cut(s) 202, 667
Bst6I CTCTTC 1 cut(s) 570
BstACI GRCGYC 4 cut(s) 79, 225, 435, 477
BstBI TTCGAA 1 cut(s) 383
BstC8I GCNNGC 2 cut(s) 77, 215
BstDEI CTNAG 3 cut(s) 40, 59, 439
BstDSI CCRYGG 2 cut(s) 93, 99
BstF5I GGATG 2 cut(s) 552, 559
BstH2I RGCGCY 2 cut(s) 82, 228
BstHHI GCGC 6 cut(s) 81, 227, 246, 308, 496, 654
BstKTI GATC 3 cut(s) 8, 535, 674
BstMAI GTCTC 2 cut(s) 408, 460
BstMBI GATC 3 cut(s) 5, 532, 671
BstMWI GCNNNNNNNGC 2 cut(s) 252, 314
BstSCI CCNGG 2 cut(s) 301, 388
BstV1I GCAGC 2 cut(s) 258, 478
BstV2I GAAGAC 1 cut(s) 336
BstX2I RGATCY 1 cut(s) 532
BstYI RGATCY 1 cut(s) 532
Bsu36I CCTNAGG 1 cut(s) 439
BsuI GTATCC 1 cut(s) 438
BsuRI GGCC 4 cut(s) 98, 466, 473, 519
BtgI CCRYGG 2 cut(s) 93, 99
BtrI CACGTC 1 cut(s) 373
BtsCI GGATG 2 cut(s) 552, 559
BtsIMutI CAGTG 1 cut(s) 56
BveI ACCTGC 1 cut(s) 299
Cac8I GCNNGC 2 cut(s) 77, 215
CfoI GCGC 6 cut(s) 81, 227, 246, 308, 496, 654
Cfr10I RCCGGY 2 cut(s) 75, 227
Cfr13I GGNCC 2 cut(s) 230, 518
CseI GACGC 2 cut(s) 443, 485
CviAII CATG 2 cut(s) 280, 618
DdeI CTNAG 3 cut(s) 40, 59, 439
DinI GGCGCC 2 cut(s) 80, 226
DpnI GATC 3 cut(s) 7, 534, 673
DpnII GATC 3 cut(s) 5, 532, 671
DraI TTTAAA 1 cut(s) 661
EaeI YGGCCR 2 cut(s) 96, 471
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
Eco147I AGGCCT 1 cut(s) 466
Eco24I GRGCYC 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 230
Eco57I CTGAAG 1 cut(s) 489
Eco81I CCTNAGG 1 cut(s) 439
EcoT22I ATGCAT 1 cut(s) 559
EcoT38I GRGCYC 1 cut(s) 215
EgeI GGCGCC 2 cut(s) 80, 226
EheI GGCGCC 2 cut(s) 80, 226
FaeI CATG 2 cut(s) 283, 621
FaiI YATR 9 cut(s) 73, 272, 281, 511, 513, 572, 619, 625, 650
FaqI GGGAC 2 cut(s) 216, 405
FatI CATG 2 cut(s) 279, 617
FauI CCCGC 1 cut(s) 573
Fnu4HI GCNGC 4 cut(s) 247, 315, 318, 492
FokI GGATG 2 cut(s) 559, 566
FriOI GRGCYC 1 cut(s) 215
Fsp4HI GCNGC 4 cut(s) 247, 315, 318, 492
GlaI GCGC 6 cut(s) 80, 226, 245, 307, 495, 653
GluI GCNGC 4 cut(s) 247, 315, 318, 492
HaeII RGCGCY 2 cut(s) 82, 228
HaeIII GGCC 4 cut(s) 98, 466, 473, 519
HapII CCGG 6 cut(s) 76, 228, 303, 321, 389, 431
HgaI GACGC 2 cut(s) 443, 485
HhaI GCGC 6 cut(s) 81, 227, 246, 308, 496, 654
Hin1I GRCGYC 4 cut(s) 79, 225, 435, 477
Hin1II CATG 2 cut(s) 283, 621
Hin6I GCGC 6 cut(s) 79, 225, 244, 306, 494, 652
HinP1I GCGC 6 cut(s) 79, 225, 244, 306, 494, 652
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 1 cut(s) 401
HpaII CCGG 6 cut(s) 76, 228, 303, 321, 389, 431
HphI GGTGA 2 cut(s) 190, 602
Hpy166II GTNNAC 2 cut(s) 109, 181
Hpy188I TCNGA 1 cut(s) 484
Hpy188III TCNNGA 3 cut(s) 146, 431, 536
Hpy8I GTNNAC 2 cut(s) 109, 181
HpyAV CCTTC 3 cut(s) 391, 536, 544
HpyCH4III ACNGT 2 cut(s) 202, 667
HpyCH4IV ACGT 2 cut(s) 372, 627
HpyCH4V TGCA 1 cut(s) 557
HpyF10VI GCNNNNNNNGC 2 cut(s) 252, 314
HpyF3I CTNAG 3 cut(s) 40, 59, 439
HpySE526I ACGT 2 cut(s) 372, 627
Hsp92I GRCGYC 4 cut(s) 79, 225, 435, 477
Hsp92II CATG 2 cut(s) 283, 621
HspAI GCGC 6 cut(s) 79, 225, 244, 306, 494, 652
KasI GGCGCC 2 cut(s) 78, 224
Kpn2I TCCGGA 1 cut(s) 430
KroI GCCGGC 1 cut(s) 75
KroNI GCCGGC 1 cut(s) 77
Kzo9I GATC 3 cut(s) 5, 532, 671
LguI GCTCTTC 1 cut(s) 570
LmnI GCTCC 2 cut(s) 123, 131
Lsp1109I GCAGC 2 cut(s) 258, 478
LweI GCATC 2 cut(s) 105, 544
MaeII ACGT 2 cut(s) 372, 627
MalI GATC 3 cut(s) 7, 534, 673
MbiI CCGCTC 2 cut(s) 126, 580
MboI GATC 3 cut(s) 5, 532, 671
MboII GAAGA 5 cut(s) 341, 495, 542, 587, 602
MflI RGATCY 1 cut(s) 532
MhlI GDGCHC 3 cut(s) 141, 215, 240
Mly113I GGCGCC 2 cut(s) 79, 225
MlyI GAGTC 1 cut(s) 410
Mph1103I ATGCAT 1 cut(s) 559
MroI TCCGGA 1 cut(s) 430
MroNI GCCGGC 1 cut(s) 75
MseI TTAA 3 cut(s) 660, 681, 700
MslI CAYNNNNRTG 2 cut(s) 104, 284
MspI CCGG 6 cut(s) 76, 228, 303, 321, 389, 431
MspR9I CCNGG 2 cut(s) 303, 390
Mva1269I GAATGC 3 cut(s) 35, 444, 557
MwoI GCNNNNNNNGC 2 cut(s) 252, 314
NaeI GCCGGC 1 cut(s) 77
NarI GGCGCC 2 cut(s) 79, 225
NciI CCSGG 2 cut(s) 303, 390
NdeII GATC 3 cut(s) 5, 532, 671
NgoMIV GCCGGC 1 cut(s) 75
NlaIII CATG 2 cut(s) 283, 621
NlaIV GGNNCC 5 cut(s) 52, 80, 226, 232, 313
NsiI ATGCAT 1 cut(s) 559
NspV TTCGAA 1 cut(s) 383
OliI CACNNNNGTG 1 cut(s) 104
PaqCI CACCTGC 1 cut(s) 299
PceI AGGCCT 1 cut(s) 466
PciSI GCTCTTC 1 cut(s) 570
PcsI WCGNNNNNNNCGW 3 cut(s) 339, 342, 345
PctI GAATGC 3 cut(s) 35, 444, 557
PdiI GCCGGC 1 cut(s) 77
PkrI GCNGC 4 cut(s) 248, 316, 319, 493
PleI GAGTC 1 cut(s) 409
PluTI GGCGCC 2 cut(s) 82, 228
PpsI GAGTC 1 cut(s) 409
PspN4I GGNNCC 5 cut(s) 52, 80, 226, 232, 313
PspPI GGNCC 2 cut(s) 230, 518
PsuI RGATCY 1 cut(s) 532
RseI CAYNNNNRTG 2 cut(s) 104, 284
SapI GCTCTTC 1 cut(s) 570
SaqAI TTAA 3 cut(s) 660, 681, 700
SatI GCNGC 4 cut(s) 247, 315, 318, 492
Sau3AI GATC 3 cut(s) 5, 532, 671
Sau96I GGNCC 2 cut(s) 230, 518
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 2 cut(s) 303, 390
SduI GDGCHC 3 cut(s) 141, 215, 240
SetI ASST 7 cut(s) 72, 251, 313, 375, 381, 569, 630
SfaNI GCATC 2 cut(s) 105, 544
SfoI GGCGCC 2 cut(s) 80, 226
SfuI TTCGAA 1 cut(s) 383
SinI GGWCC 1 cut(s) 230
SmiMI CAYNNNNRTG 2 cut(s) 104, 284
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
SseBI AGGCCT 1 cut(s) 466
SsiI CCGC 5 cut(s) 90, 124, 315, 318, 580
SspDI GGCGCC 2 cut(s) 78, 224
SspI AATATT 1 cut(s) 295
StuI AGGCCT 1 cut(s) 466
StyD4I CCNGG 2 cut(s) 301, 388
TaaI ACNGT 2 cut(s) 202, 667
TaiI ACGT 2 cut(s) 375, 630
TaqI TCGA 5 cut(s) 113, 219, 375, 383, 613
TaqII GACCGA 1 cut(s) 265
TauI GCSGC 2 cut(s) 317, 320
Tru1I TTAA 3 cut(s) 660, 681, 700
Tru9I TTAA 3 cut(s) 660, 681, 700
TscAI CASTG 1 cut(s) 63
TseI GCWGC 2 cut(s) 246, 491
TspDTI ATGAA 3 cut(s) 555, 563, 699
TspRI CASTG 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 230
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.