Rroxscaffold_4G00318340

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0012515
Physical Location & Seq
Forward (+)
44495848 .. 44498815
2968 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00318340.1

Sequence Viewer

Length: 741 bp
ATGAGATCAATATCAATGTGGAGGAAAGCCACAGCATTCTCAGGGTTTGGTGCCACACTGAGCCACCACCTATGCCGGCGCCACTCCACCGCCACCGCCACGGCTGTGAACTCGATGCTCCTCCGCTCCCTCAAAGATCACTATCTGGAAGTGTCCAAAATGACCCCTCCCCCTAAAGTCAACCCTCCCTCGCCTTTCACAGTCGTCAAGGGCGCGCTCGACGGCGCCGGTCCCGTGCTCAAGCGCAGCTACGGCGACGAACAAATCAGCATATCGGTCATGCGAATGGATAATATTATTCCCGGCGGAGGTGCCGCCGCCGGAGGAGAAGACGACGACGACGACGACGACATCAACCAGTTGTTCCTACACGTCGAGGTTTCGAAGCCGGGACAGAAGGAGTCTCTGCTTTTTCTTTGTGGGCTGTATCCGGACGCCTTGGGCATTCACTCTGTCTCTATCAGGCCTATGGCCGACGCCTCTGATTACGCTGCGCCTCGTTCTTCAGCATATACTGGCCCTCTTTTTGAAGATCTTGATGAAGGGATGAAGGATGCATTCCACAGCTACATAGAAGAGCGGGGTGTGGGTGATAGTCTTTTTCCATTTCTTCGAGCATGGCTATACGTCAAAGACCATCATACTGCTGAAAAGGATAGTTCAGCTGTATGGGCAGCAAACTCTGATATTTGGCAAAGGACAAAATTAGAGAAAATCTTCAGCAGTAAGTTTTTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

246

Amino Acids

27.05

Weight (kDa)

5.98

Isoelectric Point (pI)

42.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 79 - 214 6.3e-20 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32605
fragaria_vesca FvH4_7g05420 FvH4_7g05420 FvH4_7g05470 FvH4_7g05470
malus_domestica MD02G1258000.v1.1
prunus_persica Prupe.2G074600_v2.0.a1
pyrus_communis pycom02g21920 pycom07g04810
rosa_chinensis RchiOBHm_Chr1g0332231
rosa_laevigata RLG00000029684
rosa_multiflora Rmu_sc0000733.1_g000003
rosa_roxburghii Rroxscaffold_4G00318340
rosa_rugosa Rorug01G0099100
rosa_samantha Rh1AG122900 Rh1BG094000 Rh1CG117500 Rh1DG128300
rosa_wichuraiana Rw1G010020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 50, 78, 224, 311
AccBSI CCGCTC 2 cut(s) 126, 580
AccII CGCG 1 cut(s) 215
AccIII TCCGGA 1 cut(s) 430
AciI CCGC 7 cut(s) 90, 96, 124, 306, 315, 318, 580
AcoI YGGCCR 1 cut(s) 471
AcuI CTGAAG 2 cut(s) 489, 703
AcyI GRCGYC 4 cut(s) 79, 225, 435, 477
AfiI CCNNNNNNNGG 1 cut(s) 308
AflIII ACRYGT 1 cut(s) 370
AgsI TTSAA 2 cut(s) 530, 736
AjiI CACGTC 1 cut(s) 373
AleI CACNNNNGTG 1 cut(s) 104
AluBI AGCT 3 cut(s) 249, 567, 665
AluI AGCT 3 cut(s) 249, 567, 665
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 2 cut(s) 408, 460
Aor13HI TCCGGA 1 cut(s) 430
AoxI GGCC 3 cut(s) 464, 471, 517
ApeKI GCWGC 3 cut(s) 246, 491, 674
Asp700I GAANNNNTTC 1 cut(s) 716
AspLEI GCGC 6 cut(s) 81, 215, 217, 227, 246, 496
AspS9I GGNCC 2 cut(s) 230, 518
AsuC2I CCSGG 2 cut(s) 303, 390
AsuHPI GGTGA 1 cut(s) 602
AsuII TTCGAA 1 cut(s) 383
AvaII GGWCC 1 cut(s) 230
BanI GGYRCC 4 cut(s) 50, 78, 224, 311
BbsI GAAGAC 1 cut(s) 336
Bbv12I GWGCWC 1 cut(s) 240
BbvI GCAGC 3 cut(s) 258, 478, 686
BccI CCATC 1 cut(s) 645
BceAI ACGGC 3 cut(s) 117, 238, 268
BciVI GTATCC 1 cut(s) 438
BcnI CCSGG 2 cut(s) 303, 390
BcoDI GTCTC 2 cut(s) 408, 460
BfoI RGCGCY 2 cut(s) 82, 228
BfuI GTATCC 1 cut(s) 438
BglII AGATCT 1 cut(s) 532
BisI GCNGC 5 cut(s) 247, 315, 318, 492, 675
BlsI GCNGC 5 cut(s) 248, 316, 319, 493, 676
Bme1390I CCNGG 2 cut(s) 303, 390
Bme18I GGWCC 1 cut(s) 230
BmgBI CACGTC 1 cut(s) 373
BmgT120I GGNCC 2 cut(s) 230, 518
BmiI GGNNCC 5 cut(s) 52, 80, 226, 232, 313
BmrFI CCNGG 2 cut(s) 303, 390
BmsI GCATC 2 cut(s) 105, 544
BpiI GAAGAC 1 cut(s) 336
Bpu14I TTCGAA 1 cut(s) 383
BpuEI CTTGAG 1 cut(s) 224
BpuMI CCSGG 2 cut(s) 303, 390
BsaBI GATNNNNATC 2 cut(s) 10, 141
BsaHI GRCGYC 4 cut(s) 79, 225, 435, 477
BsaJI CCNNGG 2 cut(s) 99, 438
BsaWI WCCGGW 1 cut(s) 430
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse118I RCCGGY 2 cut(s) 75, 227
Bse1I ACTGG 2 cut(s) 358, 520
Bse8I GATNNNNATC 2 cut(s) 10, 141
BseAI TCCGGA 1 cut(s) 430
BseDI CCNNGG 2 cut(s) 99, 438
BseGI GGATG 2 cut(s) 552, 559
BseJI GATNNNNATC 2 cut(s) 10, 141
BseLI CCNNNNNNNGG 1 cut(s) 308
BseMII CTCAG 2 cut(s) 50, 54
BseNI ACTGG 2 cut(s) 358, 520
BsePI GCGCGC 1 cut(s) 213
BseRI GAGGAG 2 cut(s) 110, 339
BseXI GCAGC 3 cut(s) 258, 478, 686
Bsh1236I CGCG 1 cut(s) 215
BshFI GGCC 3 cut(s) 466, 473, 519
BshNI GGYRCC 4 cut(s) 50, 78, 224, 311
BsiHKAI GWGCWC 1 cut(s) 240
BsiSI CCGG 6 cut(s) 76, 228, 303, 321, 389, 431
BslFI GGGAC 2 cut(s) 216, 405
BslI CCNNNNNNNGG 1 cut(s) 308
BsmAI GTCTC 2 cut(s) 408, 460
BsmFI GGGAC 2 cut(s) 216, 405
BsmI GAATGC 3 cut(s) 35, 444, 557
BsnI GGCC 3 cut(s) 466, 473, 519
Bsp119I TTCGAA 1 cut(s) 383
Bsp1286I GDGCHC 1 cut(s) 240
Bsp13I TCCGGA 1 cut(s) 430
Bsp143I GATC 3 cut(s) 5, 136, 532
BspACI CCGC 7 cut(s) 90, 96, 124, 306, 315, 318, 580
BspANI GGCC 3 cut(s) 466, 473, 519
BspCNI CTCAG 2 cut(s) 51, 53
BspEI TCCGGA 1 cut(s) 430
BspFNI CGCG 1 cut(s) 215
BspLI GGNNCC 5 cut(s) 52, 80, 226, 232, 313
BspQI GCTCTTC 1 cut(s) 570
BspT104I TTCGAA 1 cut(s) 383
BspT107I GGYRCC 4 cut(s) 50, 78, 224, 311
BsrBI CCGCTC 2 cut(s) 126, 580
BsrFI RCCGGY 2 cut(s) 75, 227
BsrI ACTGG 2 cut(s) 358, 520
BssAI RCCGGY 2 cut(s) 75, 227
BssECI CCNNGG 2 cut(s) 99, 438
BssHII GCGCGC 1 cut(s) 213
BssMI GATC 3 cut(s) 5, 136, 532
BssNI GRCGYC 4 cut(s) 79, 225, 435, 477
BssT1I CCWWGG 1 cut(s) 438
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 1 cut(s) 570
BstACI GRCGYC 4 cut(s) 79, 225, 435, 477
BstBI TTCGAA 1 cut(s) 383
BstC8I GCNNGC 2 cut(s) 77, 215
BstDEI CTNAG 2 cut(s) 40, 59
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 2 cut(s) 552, 559
BstFNI CGCG 1 cut(s) 215
BstH2I RGCGCY 2 cut(s) 82, 228
BstHHI GCGC 6 cut(s) 81, 215, 217, 227, 246, 496
BstKTI GATC 3 cut(s) 8, 139, 535
BstMAI GTCTC 2 cut(s) 408, 460
BstMBI GATC 3 cut(s) 5, 136, 532
BstMWI GCNNNNNNNGC 2 cut(s) 252, 671
BstSCI CCNGG 2 cut(s) 301, 388
BstUI CGCG 1 cut(s) 215
BstV1I GCAGC 3 cut(s) 258, 478, 686
BstV2I GAAGAC 1 cut(s) 336
BstX2I RGATCY 1 cut(s) 532
BstYI RGATCY 1 cut(s) 532
BsuI GTATCC 1 cut(s) 438
BsuRI GGCC 3 cut(s) 466, 473, 519
BtgI CCRYGG 1 cut(s) 99
BtrI CACGTC 1 cut(s) 373
BtsCI GGATG 2 cut(s) 552, 559
BtsIMutI CAGTG 1 cut(s) 56
Cac8I GCNNGC 2 cut(s) 77, 215
CfoI GCGC 6 cut(s) 81, 215, 217, 227, 246, 496
Cfr10I RCCGGY 2 cut(s) 75, 227
Cfr13I GGNCC 2 cut(s) 230, 518
CseI GACGC 2 cut(s) 443, 485
CviAII CATG 2 cut(s) 280, 618
DdeI CTNAG 2 cut(s) 40, 59
DinI GGCGCC 2 cut(s) 80, 226
DpnI GATC 3 cut(s) 7, 138, 534
DpnII GATC 3 cut(s) 5, 136, 532
EaeI YGGCCR 1 cut(s) 471
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
EciI GGCGGA 1 cut(s) 321
Eco130I CCWWGG 1 cut(s) 438
Eco147I AGGCCT 1 cut(s) 466
Eco47I GGWCC 1 cut(s) 230
Eco57I CTGAAG 2 cut(s) 489, 703
EcoT14I CCWWGG 1 cut(s) 438
EcoT22I ATGCAT 1 cut(s) 559
EgeI GGCGCC 2 cut(s) 80, 226
EheI GGCGCC 2 cut(s) 80, 226
ErhI CCWWGG 1 cut(s) 438
FaeI CATG 2 cut(s) 283, 621
FaqI GGGAC 2 cut(s) 216, 405
FatI CATG 2 cut(s) 279, 617
FauI CCCGC 1 cut(s) 573
Fnu4HI GCNGC 5 cut(s) 247, 315, 318, 492, 675
FokI GGATG 2 cut(s) 559, 566
Fsp4HI GCNGC 5 cut(s) 247, 315, 318, 492, 675
GlaI GCGC 6 cut(s) 80, 214, 216, 226, 245, 495
GluI GCNGC 5 cut(s) 247, 315, 318, 492, 675
HaeII RGCGCY 2 cut(s) 82, 228
HaeIII GGCC 3 cut(s) 466, 473, 519
HapII CCGG 6 cut(s) 76, 228, 303, 321, 389, 431
HgaI GACGC 2 cut(s) 443, 485
HhaI GCGC 6 cut(s) 81, 215, 217, 227, 246, 496
Hin1I GRCGYC 4 cut(s) 79, 225, 435, 477
Hin1II CATG 2 cut(s) 283, 621
Hin6I GCGC 6 cut(s) 79, 213, 215, 225, 244, 494
HinP1I GCGC 6 cut(s) 79, 213, 215, 225, 244, 494
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 1 cut(s) 401
HpaII CCGG 6 cut(s) 76, 228, 303, 321, 389, 431
HphI GGTGA 1 cut(s) 602
Hpy166II GTNNAC 2 cut(s) 109, 181
Hpy188I TCNGA 2 cut(s) 484, 685
Hpy188III TCNNGA 3 cut(s) 146, 431, 536
Hpy8I GTNNAC 2 cut(s) 109, 181
Hpy99I CGWCG 9 cut(s) 224, 260, 338, 341, 344, 347, 350, 377, 479
HpyAV CCTTC 3 cut(s) 391, 536, 544
HpyCH4III ACNGT 1 cut(s) 202
HpyCH4IV ACGT 2 cut(s) 372, 627
HpyCH4V TGCA 1 cut(s) 557
HpyF10VI GCNNNNNNNGC 2 cut(s) 252, 671
HpyF3I CTNAG 2 cut(s) 40, 59
HpySE526I ACGT 2 cut(s) 372, 627
Hsp92I GRCGYC 4 cut(s) 79, 225, 435, 477
Hsp92II CATG 2 cut(s) 283, 621
HspAI GCGC 6 cut(s) 79, 213, 215, 225, 244, 494
KasI GGCGCC 2 cut(s) 78, 224
Kpn2I TCCGGA 1 cut(s) 430
KroI GCCGGC 1 cut(s) 75
KroNI GCCGGC 1 cut(s) 77
Kzo9I GATC 3 cut(s) 5, 136, 532
LguI GCTCTTC 1 cut(s) 570
LmnI GCTCC 2 cut(s) 123, 131
Lsp1109I GCAGC 3 cut(s) 258, 478, 686
LweI GCATC 2 cut(s) 105, 544
MaeII ACGT 2 cut(s) 372, 627
MalI GATC 3 cut(s) 7, 138, 534
MbiI CCGCTC 2 cut(s) 126, 580
MboI GATC 3 cut(s) 5, 136, 532
MboII GAAGA 6 cut(s) 341, 495, 542, 587, 602, 709
MflI RGATCY 1 cut(s) 532
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 1 cut(s) 704
Mly113I GGCGCC 2 cut(s) 79, 225
MlyI GAGTC 1 cut(s) 410
Mph1103I ATGCAT 1 cut(s) 559
MroI TCCGGA 1 cut(s) 430
MroNI GCCGGC 1 cut(s) 75
MroXI GAANNNNTTC 1 cut(s) 716
MslI CAYNNNNRTG 2 cut(s) 104, 284
MspA1I CMGCKG 1 cut(s) 665
MspI CCGG 6 cut(s) 76, 228, 303, 321, 389, 431
MspR9I CCNGG 2 cut(s) 303, 390
Mva1269I GAATGC 3 cut(s) 35, 444, 557
MvnI CGCG 1 cut(s) 215
MwoI GCNNNNNNNGC 2 cut(s) 252, 671
NaeI GCCGGC 1 cut(s) 77
NarI GGCGCC 2 cut(s) 79, 225
NciI CCSGG 2 cut(s) 303, 390
NdeII GATC 3 cut(s) 5, 136, 532
NgoMIV GCCGGC 1 cut(s) 75
NlaIII CATG 2 cut(s) 283, 621
NlaIV GGNNCC 5 cut(s) 52, 80, 226, 232, 313
NsiI ATGCAT 1 cut(s) 559
NspV TTCGAA 1 cut(s) 383
OliI CACNNNNGTG 1 cut(s) 104
PauI GCGCGC 1 cut(s) 213
PceI AGGCCT 1 cut(s) 466
PciSI GCTCTTC 1 cut(s) 570
PcsI WCGNNNNNNNCGW 3 cut(s) 339, 342, 345
PctI GAATGC 3 cut(s) 35, 444, 557
PdiI GCCGGC 1 cut(s) 77
PdmI GAANNNNTTC 1 cut(s) 716
PkrI GCNGC 5 cut(s) 248, 316, 319, 493, 676
PleI GAGTC 1 cut(s) 409
PluTI GGCGCC 2 cut(s) 82, 228
PpsI GAGTC 1 cut(s) 409
PspN4I GGNNCC 5 cut(s) 52, 80, 226, 232, 313
PspPI GGNCC 2 cut(s) 230, 518
PsuI RGATCY 1 cut(s) 532
PteI GCGCGC 1 cut(s) 213
PvuII CAGCTG 1 cut(s) 665
RseI CAYNNNNRTG 2 cut(s) 104, 284
SapI GCTCTTC 1 cut(s) 570
SatI GCNGC 5 cut(s) 247, 315, 318, 492, 675
Sau3AI GATC 3 cut(s) 5, 136, 532
Sau96I GGNCC 2 cut(s) 230, 518
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 2 cut(s) 303, 390
SduI GDGCHC 1 cut(s) 240
SetI ASST 8 cut(s) 72, 251, 313, 375, 381, 569, 630, 667
SfaNI GCATC 2 cut(s) 105, 544
SfoI GGCGCC 2 cut(s) 80, 226
SfuI TTCGAA 1 cut(s) 383
SinI GGWCC 1 cut(s) 230
SmiMI CAYNNNNRTG 2 cut(s) 104, 284
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 1 cut(s) 704
SseBI AGGCCT 1 cut(s) 466
SsiI CCGC 7 cut(s) 90, 96, 124, 306, 315, 318, 580
SspDI GGCGCC 2 cut(s) 78, 224
SspI AATATT 1 cut(s) 295
StuI AGGCCT 1 cut(s) 466
StyD4I CCNGG 2 cut(s) 301, 388
StyI CCWWGG 1 cut(s) 438
TaaI ACNGT 1 cut(s) 202
TaiI ACGT 2 cut(s) 375, 630
TaqI TCGA 5 cut(s) 113, 219, 375, 383, 613
TaqII GACCGA 1 cut(s) 265
TasI AATT 1 cut(s) 704
TauI GCSGC 2 cut(s) 317, 320
TscAI CASTG 1 cut(s) 63
TseI GCWGC 3 cut(s) 246, 491, 674
TspDTI ATGAA 2 cut(s) 555, 563
TspRI CASTG 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 716
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.