Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0012515

Physical Location & Seq

Genomic Coordinates Reverse (-)

5725800 .. 5727750

Gene Structure 1951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05420.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTGGAGGAAATTATCAGTAGGGTTTGCACTACTGACGCAGCAGCAGCTATGTCGGCGCCACTCCACGGCCACGGCCACGGCCACGGCCACTGCTGTGAACTCGATGCTCCTCCGCTCCCTGAAAGAGCACTATCTGGAAGTGTCCATAATGTCCCCTCCCCCTAAAGTGAACCCTCCCTCGCCTTTCACCGTCGTCAAGGGCGCCCTCGACGGCACCGGCCCCGTCCTCAGGCGCAGCTACGGCGACGAAGAAATCAGCATAGCCGTGATGCGATTGGCCAATATTATTCCCGACGCCGACGACATCAACCAGTTGTTCATACACGTGGACGTTTCGAAGCCCAACGAGAAGGAGTCTCTGATTTTCCTCTGCGCCCTGTATCCGGACGCCTTAGGCATTCACTCTGTCTCTATGAGGCGCATGGCTGAACCCTCTGCGCTTCGTTCCTCTGCTCTTCGTTATAACGGCCCTCGTTTTGAAGATCTTGATGAAGGGATGAGGGATGCATTCCACAGCTACATAGAAGAGCGGGGTGTGGGTGATAGTCTTTTTCCATTTCTTCAAGCTTGGCTTTATGTAAAAGACCATCGTAATCTCATGCGCTGGTTTAAATCAGTAGGATCATTCGTTAAGGAAACCAAGTCAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

MAM33

Protein Analysis

218

Amino Acids

24.41

Weight (kDa)

8.54

Isoelectric Point (pI)

53.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32605
fragaria_vesca	FvH4_7g05420 FvH4_7g05420 FvH4_7g05470 FvH4_7g05470
malus_domestica	MD02G1258000.v1.1
prunus_persica	Prupe.2G074600_v2.0.a1
pyrus_communis	pycom02g21920 pycom07g04810
rosa_chinensis	RchiOBHm_Chr1g0332231
rosa_laevigata	RLG00000029684
rosa_multiflora	Rmu_sc0000733.1_g000003
rosa_roxburghii	Rroxscaffold_4G00318340
rosa_rugosa	Rorug01G0099100
rosa_samantha	Rh1AG122900 Rh1BG094000 Rh1CG117500 Rh1DG128300
rosa_wichuraiana	Rw1G010020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	465
AccB1I	GGYRCC	3 cut(s)	57, 203, 215
AccBSI	CCGCTC	2 cut(s)	117, 532
AccIII	TCCGGA	1 cut(s)	385
AciI	CCGC	2 cut(s)	115, 532
AclWI	GGATC	1 cut(s)	631
AcoI	YGGCCR	5 cut(s)	69, 75, 81, 87, 279
AcvI	CACGTG	1 cut(s)	328
AcyI	GRCGYC	4 cut(s)	58, 204, 297, 390
AfiI	CCNNNNNNNGG	3 cut(s)	67, 231, 385
AflIII	ACRYGT	1 cut(s)	325
AgsI	TTSAA	2 cut(s)	482, 566
AleI	CACNNNNGTG	1 cut(s)	95
AluBI	AGCT	4 cut(s)	49, 240, 519, 569
AluI	AGCT	4 cut(s)	49, 240, 519, 569
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	2 cut(s)	363, 415
AlwI	GGATC	1 cut(s)	631
Aor13HI	TCCGGA	1 cut(s)	385
AoxI	GGCC	7 cut(s)	69, 75, 81, 87, 220, 279, 469
ApeKI	GCWGC	4 cut(s)	40, 43, 46, 237
AspLEI	GCGC	7 cut(s)	60, 206, 237, 377, 423, 442, 606
AspS9I	GGNCC	2 cut(s)	221, 470
AsuHPI	GGTGA	2 cut(s)	181, 554
AsuII	TTCGAA	1 cut(s)	338
AxyI	CCTNAGG	2 cut(s)	230, 394
BalI	TGGCCA	1 cut(s)	281
BanI	GGYRCC	3 cut(s)	57, 203, 215
BbrPI	CACGTG	1 cut(s)	328
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	4 cut(s)	52, 55, 58, 249
BccI	CCATC	1 cut(s)	597
BceAI	ACGGC	8 cut(s)	84, 90, 96, 102, 229, 251, 259, 484
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BciVI	GTATCC	1 cut(s)	393
BcoDI	GTCTC	2 cut(s)	363, 415
BfoI	RGCGCY	2 cut(s)	61, 207
BfuI	GTATCC	1 cut(s)	393
BglII	AGATCT	1 cut(s)	484
BisI	GCNGC	4 cut(s)	41, 44, 47, 238
BlsI	GCNGC	4 cut(s)	42, 45, 48, 239
BmgT120I	GGNCC	2 cut(s)	221, 470
BmiI	GGNNCC	4 cut(s)	59, 205, 217, 223
BmsI	GCATC	3 cut(s)	96, 261, 496
Bpu14I	TTCGAA	1 cut(s)	338
BsaAI	YACGTR	1 cut(s)	328
BsaHI	GRCGYC	4 cut(s)	58, 204, 297, 390
BsaJI	CCNNGG	4 cut(s)	66, 72, 78, 84
BsaWI	WCCGGW	1 cut(s)	385
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 231, 385
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	313
Bse21I	CCTNAGG	2 cut(s)	230, 394
BseAI	TCCGGA	1 cut(s)	385
BseDI	CCNNGG	4 cut(s)	66, 72, 78, 84
BseGI	GGATG	2 cut(s)	504, 511
BseLI	CCNNNNNNNGG	3 cut(s)	67, 231, 385
BseMII	CTCAG	1 cut(s)	244
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	4 cut(s)	52, 55, 58, 249
BshFI	GGCC	7 cut(s)	71, 77, 83, 89, 222, 281, 471
BshNI	GGYRCC	3 cut(s)	57, 203, 215
BsiHKAI	GWGCWC	1 cut(s)	132
BsiSI	CCGG	2 cut(s)	219, 386
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	3 cut(s)	67, 231, 385
BsmAI	GTCTC	2 cut(s)	363, 415
BsmFI	GGGAC	1 cut(s)	139
BsmI	GAATGC	2 cut(s)	399, 509
BsnI	GGCC	7 cut(s)	71, 77, 83, 89, 222, 281, 471
Bsp119I	TTCGAA	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp13I	TCCGGA	1 cut(s)	385
Bsp143I	GATC	2 cut(s)	484, 623
BspACI	CCGC	2 cut(s)	115, 532
BspANI	GGCC	7 cut(s)	71, 77, 83, 89, 222, 281, 471
BspCNI	CTCAG	1 cut(s)	243
BspEI	TCCGGA	1 cut(s)	385
BspLI	GGNNCC	4 cut(s)	59, 205, 217, 223
BspPI	GGATC	1 cut(s)	631
BspQI	GCTCTTC	2 cut(s)	462, 522
BspT104I	TTCGAA	1 cut(s)	338
BspT107I	GGYRCC	3 cut(s)	57, 203, 215
BsrBI	CCGCTC	2 cut(s)	117, 532
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	313
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	4 cut(s)	66, 72, 78, 84
BssMI	GATC	2 cut(s)	484, 623
BssNI	GRCGYC	4 cut(s)	58, 204, 297, 390
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	2 cut(s)	462, 522
BstACI	GRCGYC	4 cut(s)	58, 204, 297, 390
BstBAI	YACGTR	1 cut(s)	328
BstBI	TTCGAA	1 cut(s)	338
BstDEI	CTNAG	2 cut(s)	230, 394
BstDSI	CCRYGG	4 cut(s)	66, 72, 78, 84
BstF5I	GGATG	2 cut(s)	504, 511
BstH2I	RGCGCY	2 cut(s)	61, 207
BstHHI	GCGC	7 cut(s)	60, 206, 237, 377, 423, 442, 606
BstKTI	GATC	2 cut(s)	487, 626
BstMAI	GTCTC	2 cut(s)	363, 415
BstMBI	GATC	2 cut(s)	484, 623
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 55, 243
BstV1I	GCAGC	4 cut(s)	52, 55, 58, 249
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
Bsu36I	CCTNAGG	2 cut(s)	230, 394
BsuI	GTATCC	1 cut(s)	393
BsuRI	GGCC	7 cut(s)	71, 77, 83, 89, 222, 281, 471
BtgI	CCRYGG	4 cut(s)	66, 72, 78, 84
BtsCI	GGATG	2 cut(s)	504, 511
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	90
CfoI	GCGC	7 cut(s)	60, 206, 237, 377, 423, 442, 606
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	2 cut(s)	221, 470
CseI	GACGC	3 cut(s)	46, 305, 398
CviAII	CATG	2 cut(s)	424, 601
DdeI	CTNAG	2 cut(s)	230, 394
DinI	GGCGCC	2 cut(s)	59, 205
DpnI	GATC	2 cut(s)	486, 625
DpnII	GATC	2 cut(s)	484, 623
DraI	TTTAAA	1 cut(s)	613
EaeI	YGGCCR	5 cut(s)	69, 75, 81, 87, 279
Eam1104I	CTCTTC	2 cut(s)	462, 522
EarI	CTCTTC	2 cut(s)	462, 522
Eco72I	CACGTG	1 cut(s)	328
Eco81I	CCTNAGG	2 cut(s)	230, 394
EcoT22I	ATGCAT	1 cut(s)	511
EgeI	GGCGCC	2 cut(s)	59, 205
EheI	GGCGCC	2 cut(s)	59, 205
FaeI	CATG	2 cut(s)	427, 604
FalI	AAGNNNNNCTT	2 cut(s)	558, 590
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	2 cut(s)	423, 600
FauI	CCCGC	1 cut(s)	525
Fnu4HI	GCNGC	4 cut(s)	41, 44, 47, 238
FokI	GGATG	2 cut(s)	511, 518
Fsp4HI	GCNGC	4 cut(s)	41, 44, 47, 238
GlaI	GCGC	7 cut(s)	59, 205, 236, 376, 422, 441, 605
GluI	GCNGC	4 cut(s)	41, 44, 47, 238
HaeII	RGCGCY	2 cut(s)	61, 207
HaeIII	GGCC	7 cut(s)	71, 77, 83, 89, 222, 281, 471
HapII	CCGG	2 cut(s)	219, 386
HgaI	GACGC	3 cut(s)	46, 305, 398
HhaI	GCGC	7 cut(s)	60, 206, 237, 377, 423, 442, 606
Hin1I	GRCGYC	4 cut(s)	58, 204, 297, 390
Hin1II	CATG	2 cut(s)	427, 604
Hin6I	GCGC	7 cut(s)	58, 204, 235, 375, 421, 440, 604
HinP1I	GCGC	7 cut(s)	58, 204, 235, 375, 421, 440, 604
HindIII	AAGCTT	1 cut(s)	567
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	2 cut(s)	219, 386
HphI	GGTGA	2 cut(s)	181, 554
Hpy166II	GTNNAC	3 cut(s)	100, 172, 331
Hpy188I	TCNGA	1 cut(s)	363
Hpy188III	TCNNGA	4 cut(s)	137, 293, 386, 488
Hpy8I	GTNNAC	3 cut(s)	100, 172, 331
Hpy99I	CGWCG	5 cut(s)	197, 215, 251, 299, 305
HpyAV	CCTTC	2 cut(s)	346, 488
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	2 cut(s)	327, 333
HpyCH4V	TGCA	2 cut(s)	29, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 55, 243
HpyF3I	CTNAG	2 cut(s)	230, 394
HpySE526I	ACGT	2 cut(s)	327, 333
Hsp92I	GRCGYC	4 cut(s)	58, 204, 297, 390
Hsp92II	CATG	2 cut(s)	427, 604
HspAI	GCGC	7 cut(s)	58, 204, 235, 375, 421, 440, 604
KasI	GGCGCC	2 cut(s)	57, 203
Kpn2I	TCCGGA	1 cut(s)	385
Kzo9I	GATC	2 cut(s)	484, 623
LguI	GCTCTTC	2 cut(s)	462, 522
LmnI	GCTCC	2 cut(s)	114, 122
LpnPI	CCDG	8 cut(s)	122, 134, 217, 232, 326, 392, 399, 592
Lsp1109I	GCAGC	4 cut(s)	52, 55, 58, 249
LweI	GCATC	3 cut(s)	96, 261, 496
MaeII	ACGT	2 cut(s)	327, 333
MalI	GATC	2 cut(s)	486, 625
MbiI	CCGCTC	2 cut(s)	117, 532
MboI	GATC	2 cut(s)	484, 623
MboII	GAAGA	5 cut(s)	263, 449, 494, 539, 554
MflI	RGATCY	1 cut(s)	484
MhlI	GDGCHC	1 cut(s)	132
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	1 cut(s)	11
MluNI	TGGCCA	1 cut(s)	281
Mly113I	GGCGCC	2 cut(s)	58, 204
MlyI	GAGTC	1 cut(s)	365
Mox20I	TGGCCA	1 cut(s)	281
Mph1103I	ATGCAT	1 cut(s)	511
MroI	TCCGGA	1 cut(s)	385
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	3 cut(s)	612, 633, 652
MslI	CAYNNNNRTG	3 cut(s)	95, 266, 326
Msp20I	TGGCCA	1 cut(s)	281
MspI	CCGG	2 cut(s)	219, 386
Mva1269I	GAATGC	2 cut(s)	399, 509
MwoI	GCNNNNNNNGC	3 cut(s)	46, 55, 243
NarI	GGCGCC	2 cut(s)	58, 204
NdeII	GATC	2 cut(s)	484, 623
NlaIII	CATG	2 cut(s)	427, 604
NlaIV	GGNNCC	4 cut(s)	59, 205, 217, 223
NsiI	ATGCAT	1 cut(s)	511
NspV	TTCGAA	1 cut(s)	338
OliI	CACNNNNGTG	1 cut(s)	95
PciSI	GCTCTTC	2 cut(s)	462, 522
PctI	GAATGC	2 cut(s)	399, 509
PkrI	GCNGC	4 cut(s)	42, 45, 48, 239
PleI	GAGTC	1 cut(s)	364
PluTI	GGCGCC	2 cut(s)	61, 207
PmaCI	CACGTG	1 cut(s)	328
PmlI	CACGTG	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	364
Ppu21I	YACGTR	1 cut(s)	328
PsiI	TTATAA	1 cut(s)	465
PspCI	CACGTG	1 cut(s)	328
PspN4I	GGNNCC	4 cut(s)	59, 205, 217, 223
PspPI	GGNCC	2 cut(s)	221, 470
PsuI	RGATCY	1 cut(s)	484
RseI	CAYNNNNRTG	3 cut(s)	95, 266, 326
SapI	GCTCTTC	2 cut(s)	462, 522
SaqAI	TTAA	3 cut(s)	612, 633, 652
SatI	GCNGC	4 cut(s)	41, 44, 47, 238
Sau3AI	GATC	2 cut(s)	484, 623
Sau96I	GGNCC	2 cut(s)	221, 470
SchI	GAGTC	1 cut(s)	365
SduI	GDGCHC	1 cut(s)	132
SetI	ASST	6 cut(s)	51, 242, 330, 336, 521, 571
SfaNI	GCATC	3 cut(s)	96, 261, 496
SfoI	GGCGCC	2 cut(s)	59, 205
SfuI	TTCGAA	1 cut(s)	338
SmiMI	CAYNNNNRTG	3 cut(s)	95, 266, 326
Sse9I	AATT	1 cut(s)	11
SsiI	CCGC	2 cut(s)	115, 532
SspDI	GGCGCC	2 cut(s)	57, 203
SspI	AATATT	1 cut(s)	286
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	2 cut(s)	330, 336
TaqI	TCGA	3 cut(s)	104, 210, 338
TasI	AATT	1 cut(s)	11
Tru1I	TTAA	3 cut(s)	612, 633, 652
Tru9I	TTAA	3 cut(s)	612, 633, 652
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	4 cut(s)	40, 43, 46, 237
TspDTI	ATGAA	2 cut(s)	310, 507
TspRI	CASTG	1 cut(s)	97
Zsp2I	ATGCAT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.