RchiOBHm_Chr1g0332231

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0012515
Physical Location & Seq
Reverse (-)
23364243 .. 23366975
2733 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56115

Sequence Viewer

Length: 699 bp
ATGAGTTCAATATCAATGTGGAGGAAAGCCACAGCATTCTCAGGGTTTGGCGCCACACTGAGCCACCACCTATGCCGGCGCCACTCCACCGCCACCGCCACGGCTGTGAACTCGGTGCTCCTCCGCTCCCTGAAAGAGCACTATCTGGAAGTGTCCAAAATGATCCCTCCCCCTAAAGTCAACCCTCCCTCTCCTTTCACCGTCGTCAAGGGCGCGCTCGACGGCGCCGGTCCCGTGCTCAAGCGCAGCTACGGCGACGAACAAATCAGCATATCGGTCATGCGAATGGATAATATTATTCCCGGCGCAGGTGCCGCCGCCGGAGGAGAAGACGACGACGACGACGACATCAACCAGTTGTTCCTACACGTCGAGGTTTCGAAGCCGGGACAGAAGGAGTCTCTGCTTTTTCTTTGTGGGCTGTATCCGGACGCCTTAGGCATTCACTCTGTCTCTATCAGGCCTATGGCCGACGCCTCTGATTACGCTGCGCCTCGTTCTTCAGCATATACTGGCCCTCTTTTTGAAGATCTTGATGAAGGGATGAAGGATGCATTCCACAGCTACATAGAAGAGCGGGGTGTGGGTGATAGTCTTTTTCCATTTCTTCGAGCATGGCTATACGTCAAAGACCATCGTAATCTTATGCGCTGGTTTAAAACAGTAGGATCATTTGTTAATGAAACCAAGTCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

232

Amino Acids

25.45

Weight (kDa)

6.05

Isoelectric Point (pI)

44.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 79 - 226 5.6e-24 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32605
fragaria_vesca FvH4_7g05420 FvH4_7g05420 FvH4_7g05470 FvH4_7g05470
malus_domestica MD02G1258000.v1.1
prunus_persica Prupe.2G074600_v2.0.a1
pyrus_communis pycom02g21920 pycom07g04810
rosa_chinensis RchiOBHm_Chr1g0332231
rosa_laevigata RLG00000029684
rosa_multiflora Rmu_sc0000733.1_g000003
rosa_roxburghii Rroxscaffold_4G00318340
rosa_rugosa Rorug01G0099100
rosa_samantha Rh1AG122900 Rh1BG094000 Rh1CG117500 Rh1DG128300
rosa_wichuraiana Rw1G010020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 299
Acc36I ACCTGC 1 cut(s) 299
AccB1I GGYRCC 4 cut(s) 50, 78, 224, 311
AccBSI CCGCTC 2 cut(s) 126, 577
AccII CGCG 1 cut(s) 215
AccIII TCCGGA 1 cut(s) 427
AciI CCGC 6 cut(s) 90, 96, 124, 315, 318, 577
AclWI GGATC 2 cut(s) 157, 676
AcoI YGGCCR 1 cut(s) 468
AcuI CTGAAG 1 cut(s) 486
AcyI GRCGYC 5 cut(s) 51, 79, 225, 432, 474
AfiI CCNNNNNNNGG 1 cut(s) 308
AflIII ACRYGT 1 cut(s) 367
AgsI TTSAA 2 cut(s) 9, 527
AjiI CACGTC 1 cut(s) 370
AleI CACNNNNGTG 1 cut(s) 104
AluBI AGCT 2 cut(s) 249, 564
AluI AGCT 2 cut(s) 249, 564
Alw21I GWGCWC 3 cut(s) 120, 141, 240
Alw26I GTCTC 2 cut(s) 405, 457
AlwI GGATC 2 cut(s) 157, 676
Aor13HI TCCGGA 1 cut(s) 427
AoxI GGCC 3 cut(s) 461, 468, 514
ApeKI GCWGC 2 cut(s) 246, 488
AspLEI GCGC 9 cut(s) 53, 81, 215, 217, 227, 246, 308, 493, 651
AspS9I GGNCC 2 cut(s) 230, 515
AsuC2I CCSGG 2 cut(s) 303, 387
AsuHPI GGTGA 2 cut(s) 190, 599
AsuII TTCGAA 1 cut(s) 380
AvaII GGWCC 1 cut(s) 230
AxyI CCTNAGG 1 cut(s) 436
BanI GGYRCC 4 cut(s) 50, 78, 224, 311
BbsI GAAGAC 1 cut(s) 336
Bbv12I GWGCWC 3 cut(s) 120, 141, 240
BbvI GCAGC 2 cut(s) 258, 475
BccI CCATC 1 cut(s) 642
BceAI ACGGC 3 cut(s) 117, 238, 268
BciVI GTATCC 1 cut(s) 435
BcnI CCSGG 2 cut(s) 303, 387
BcoDI GTCTC 2 cut(s) 405, 457
BfoI RGCGCY 3 cut(s) 54, 82, 228
BfuAI ACCTGC 1 cut(s) 299
BfuI GTATCC 1 cut(s) 435
BglII AGATCT 1 cut(s) 529
BisI GCNGC 4 cut(s) 247, 315, 318, 489
BlsI GCNGC 4 cut(s) 248, 316, 319, 490
Bme1390I CCNGG 2 cut(s) 303, 387
Bme18I GGWCC 1 cut(s) 230
BmgBI CACGTC 1 cut(s) 370
BmgT120I GGNCC 2 cut(s) 230, 515
BmiI GGNNCC 5 cut(s) 52, 80, 226, 232, 313
BmrFI CCNGG 2 cut(s) 303, 387
BmsI GCATC 1 cut(s) 541
BpiI GAAGAC 1 cut(s) 336
Bpu14I TTCGAA 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 224
BpuMI CCSGG 2 cut(s) 303, 387
BsaHI GRCGYC 5 cut(s) 51, 79, 225, 432, 474
BsaJI CCNNGG 1 cut(s) 99
BsaWI WCCGGW 1 cut(s) 427
Bsc4I CCNNNNNNNGG 1 cut(s) 308
Bse118I RCCGGY 2 cut(s) 75, 227
Bse1I ACTGG 2 cut(s) 355, 517
Bse21I CCTNAGG 1 cut(s) 436
BseAI TCCGGA 1 cut(s) 427
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 2 cut(s) 549, 556
BseLI CCNNNNNNNGG 1 cut(s) 308
BseMII CTCAG 2 cut(s) 50, 54
BseNI ACTGG 2 cut(s) 355, 517
BsePI GCGCGC 1 cut(s) 213
BseRI GAGGAG 2 cut(s) 110, 339
BseXI GCAGC 2 cut(s) 258, 475
Bsh1236I CGCG 1 cut(s) 215
BshFI GGCC 3 cut(s) 463, 470, 516
BshNI GGYRCC 4 cut(s) 50, 78, 224, 311
BsiHKAI GWGCWC 3 cut(s) 120, 141, 240
BsiSI CCGG 6 cut(s) 76, 228, 303, 321, 386, 428
BslFI GGGAC 2 cut(s) 216, 402
BslI CCNNNNNNNGG 1 cut(s) 308
BsmAI GTCTC 2 cut(s) 405, 457
BsmFI GGGAC 2 cut(s) 216, 402
BsmI GAATGC 3 cut(s) 35, 441, 554
BsnI GGCC 3 cut(s) 463, 470, 516
Bsp119I TTCGAA 1 cut(s) 380
Bsp1286I GDGCHC 3 cut(s) 120, 141, 240
Bsp13I TCCGGA 1 cut(s) 427
Bsp143I GATC 3 cut(s) 162, 529, 668
BspACI CCGC 6 cut(s) 90, 96, 124, 315, 318, 577
BspANI GGCC 3 cut(s) 463, 470, 516
BspCNI CTCAG 2 cut(s) 51, 53
BspEI TCCGGA 1 cut(s) 427
BspFNI CGCG 1 cut(s) 215
BspLI GGNNCC 5 cut(s) 52, 80, 226, 232, 313
BspMI ACCTGC 1 cut(s) 299
BspPI GGATC 2 cut(s) 157, 676
BspQI GCTCTTC 1 cut(s) 567
BspT104I TTCGAA 1 cut(s) 380
BspT107I GGYRCC 4 cut(s) 50, 78, 224, 311
BsrBI CCGCTC 2 cut(s) 126, 577
BsrFI RCCGGY 2 cut(s) 75, 227
BsrI ACTGG 2 cut(s) 355, 517
BssAI RCCGGY 2 cut(s) 75, 227
BssECI CCNNGG 1 cut(s) 99
BssHII GCGCGC 1 cut(s) 213
BssMI GATC 3 cut(s) 162, 529, 668
BssNI GRCGYC 5 cut(s) 51, 79, 225, 432, 474
Bst4CI ACNGT 2 cut(s) 202, 664
Bst6I CTCTTC 1 cut(s) 567
BstACI GRCGYC 5 cut(s) 51, 79, 225, 432, 474
BstBI TTCGAA 1 cut(s) 380
BstC8I GCNNGC 2 cut(s) 77, 215
BstDEI CTNAG 3 cut(s) 40, 59, 436
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 2 cut(s) 549, 556
BstFNI CGCG 1 cut(s) 215
BstH2I RGCGCY 3 cut(s) 54, 82, 228
BstHHI GCGC 9 cut(s) 53, 81, 215, 217, 227, 246, 308, 493, 651
BstKTI GATC 3 cut(s) 165, 532, 671
BstMAI GTCTC 2 cut(s) 405, 457
BstMBI GATC 3 cut(s) 162, 529, 668
BstMWI GCNNNNNNNGC 2 cut(s) 252, 314
BstSCI CCNGG 2 cut(s) 301, 385
BstUI CGCG 1 cut(s) 215
BstV1I GCAGC 2 cut(s) 258, 475
BstV2I GAAGAC 1 cut(s) 336
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
Bsu36I CCTNAGG 1 cut(s) 436
BsuI GTATCC 1 cut(s) 435
BsuRI GGCC 3 cut(s) 463, 470, 516
BtgI CCRYGG 1 cut(s) 99
BtrI CACGTC 1 cut(s) 370
BtsCI GGATG 2 cut(s) 549, 556
BtsIMutI CAGTG 1 cut(s) 56
BveI ACCTGC 1 cut(s) 299
Cac8I GCNNGC 2 cut(s) 77, 215
CfoI GCGC 9 cut(s) 53, 81, 215, 217, 227, 246, 308, 493, 651
Cfr10I RCCGGY 2 cut(s) 75, 227
Cfr13I GGNCC 2 cut(s) 230, 515
CseI GACGC 2 cut(s) 440, 482
CviAII CATG 2 cut(s) 280, 615
DdeI CTNAG 3 cut(s) 40, 59, 436
DinI GGCGCC 3 cut(s) 52, 80, 226
DpnI GATC 3 cut(s) 164, 531, 670
DpnII GATC 3 cut(s) 162, 529, 668
DraI TTTAAA 1 cut(s) 658
EaeI YGGCCR 1 cut(s) 468
Eam1104I CTCTTC 1 cut(s) 567
EarI CTCTTC 1 cut(s) 567
Eco147I AGGCCT 1 cut(s) 463
Eco47I GGWCC 1 cut(s) 230
Eco57I CTGAAG 1 cut(s) 486
Eco81I CCTNAGG 1 cut(s) 436
EcoT22I ATGCAT 1 cut(s) 556
EgeI GGCGCC 3 cut(s) 52, 80, 226
EheI GGCGCC 3 cut(s) 52, 80, 226
FaeI CATG 2 cut(s) 283, 618
FaqI GGGAC 2 cut(s) 216, 402
FatI CATG 2 cut(s) 279, 614
FauI CCCGC 1 cut(s) 570
Fnu4HI GCNGC 4 cut(s) 247, 315, 318, 489
FokI GGATG 2 cut(s) 556, 563
Fsp4HI GCNGC 4 cut(s) 247, 315, 318, 489
GlaI GCGC 9 cut(s) 52, 80, 214, 216, 226, 245, 307, 492, 650
GluI GCNGC 4 cut(s) 247, 315, 318, 489
HaeII RGCGCY 3 cut(s) 54, 82, 228
HaeIII GGCC 3 cut(s) 463, 470, 516
HapII CCGG 6 cut(s) 76, 228, 303, 321, 386, 428
HgaI GACGC 2 cut(s) 440, 482
HhaI GCGC 9 cut(s) 53, 81, 215, 217, 227, 246, 308, 493, 651
Hin1I GRCGYC 5 cut(s) 51, 79, 225, 432, 474
Hin1II CATG 2 cut(s) 283, 618
Hin6I GCGC 9 cut(s) 51, 79, 213, 215, 225, 244, 306, 491, 649
HinP1I GCGC 9 cut(s) 51, 79, 213, 215, 225, 244, 306, 491, 649
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 1 cut(s) 398
HpaII CCGG 6 cut(s) 76, 228, 303, 321, 386, 428
HphI GGTGA 2 cut(s) 190, 599
Hpy166II GTNNAC 2 cut(s) 109, 181
Hpy188I TCNGA 1 cut(s) 481
Hpy188III TCNNGA 3 cut(s) 146, 428, 533
Hpy8I GTNNAC 2 cut(s) 109, 181
Hpy99I CGWCG 9 cut(s) 206, 224, 260, 338, 341, 344, 347, 374, 476
HpyAV CCTTC 3 cut(s) 388, 533, 541
HpyCH4III ACNGT 2 cut(s) 202, 664
HpyCH4IV ACGT 2 cut(s) 369, 624
HpyCH4V TGCA 1 cut(s) 554
HpyF10VI GCNNNNNNNGC 2 cut(s) 252, 314
HpyF3I CTNAG 3 cut(s) 40, 59, 436
HpySE526I ACGT 2 cut(s) 369, 624
Hsp92I GRCGYC 5 cut(s) 51, 79, 225, 432, 474
Hsp92II CATG 2 cut(s) 283, 618
HspAI GCGC 9 cut(s) 51, 79, 213, 215, 225, 244, 306, 491, 649
KasI GGCGCC 3 cut(s) 50, 78, 224
Kpn2I TCCGGA 1 cut(s) 427
KroI GCCGGC 1 cut(s) 75
KroNI GCCGGC 1 cut(s) 77
Kzo9I GATC 3 cut(s) 162, 529, 668
LguI GCTCTTC 1 cut(s) 567
LmnI GCTCC 2 cut(s) 123, 131
Lsp1109I GCAGC 2 cut(s) 258, 475
LweI GCATC 1 cut(s) 541
MaeII ACGT 2 cut(s) 369, 624
MalI GATC 3 cut(s) 164, 531, 670
MbiI CCGCTC 2 cut(s) 126, 577
MboI GATC 3 cut(s) 162, 529, 668
MboII GAAGA 5 cut(s) 341, 492, 539, 584, 599
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 3 cut(s) 120, 141, 240
Mly113I GGCGCC 3 cut(s) 51, 79, 225
MlyI GAGTC 1 cut(s) 407
Mph1103I ATGCAT 1 cut(s) 556
MroI TCCGGA 1 cut(s) 427
MroNI GCCGGC 1 cut(s) 75
MseI TTAA 3 cut(s) 657, 678, 697
MslI CAYNNNNRTG 2 cut(s) 104, 284
MspI CCGG 6 cut(s) 76, 228, 303, 321, 386, 428
MspR9I CCNGG 2 cut(s) 303, 387
Mva1269I GAATGC 3 cut(s) 35, 441, 554
MvnI CGCG 1 cut(s) 215
MwoI GCNNNNNNNGC 2 cut(s) 252, 314
NaeI GCCGGC 1 cut(s) 77
NarI GGCGCC 3 cut(s) 51, 79, 225
NciI CCSGG 2 cut(s) 303, 387
NdeII GATC 3 cut(s) 162, 529, 668
NgoMIV GCCGGC 1 cut(s) 75
NlaIII CATG 2 cut(s) 283, 618
NlaIV GGNNCC 5 cut(s) 52, 80, 226, 232, 313
NsiI ATGCAT 1 cut(s) 556
NspV TTCGAA 1 cut(s) 380
OliI CACNNNNGTG 1 cut(s) 104
PaqCI CACCTGC 1 cut(s) 299
PauI GCGCGC 1 cut(s) 213
PceI AGGCCT 1 cut(s) 463
PciSI GCTCTTC 1 cut(s) 567
PcsI WCGNNNNNNNCGW 2 cut(s) 339, 342
PctI GAATGC 3 cut(s) 35, 441, 554
PdiI GCCGGC 1 cut(s) 77
PkrI GCNGC 4 cut(s) 248, 316, 319, 490
PleI GAGTC 1 cut(s) 406
PluTI GGCGCC 3 cut(s) 54, 82, 228
PpsI GAGTC 1 cut(s) 406
PspN4I GGNNCC 5 cut(s) 52, 80, 226, 232, 313
PspPI GGNCC 2 cut(s) 230, 515
PsuI RGATCY 1 cut(s) 529
PteI GCGCGC 1 cut(s) 213
RseI CAYNNNNRTG 2 cut(s) 104, 284
SapI GCTCTTC 1 cut(s) 567
SaqAI TTAA 3 cut(s) 657, 678, 697
SatI GCNGC 4 cut(s) 247, 315, 318, 489
Sau3AI GATC 3 cut(s) 162, 529, 668
Sau96I GGNCC 2 cut(s) 230, 515
SchI GAGTC 1 cut(s) 407
ScrFI CCNGG 2 cut(s) 303, 387
SduI GDGCHC 3 cut(s) 120, 141, 240
SetI ASST 7 cut(s) 72, 251, 313, 372, 378, 566, 627
SfaNI GCATC 1 cut(s) 541
SfoI GGCGCC 3 cut(s) 52, 80, 226
SfuI TTCGAA 1 cut(s) 380
SinI GGWCC 1 cut(s) 230
SmiMI CAYNNNNRTG 2 cut(s) 104, 284
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
SseBI AGGCCT 1 cut(s) 463
SsiI CCGC 6 cut(s) 90, 96, 124, 315, 318, 577
SspDI GGCGCC 3 cut(s) 50, 78, 224
SspI AATATT 1 cut(s) 295
StuI AGGCCT 1 cut(s) 463
StyD4I CCNGG 2 cut(s) 301, 385
TaaI ACNGT 2 cut(s) 202, 664
TaiI ACGT 2 cut(s) 372, 627
TaqI TCGA 4 cut(s) 219, 372, 380, 610
TaqII GACCGA 1 cut(s) 265
TauI GCSGC 2 cut(s) 317, 320
Tru1I TTAA 3 cut(s) 657, 678, 697
Tru9I TTAA 3 cut(s) 657, 678, 697
TscAI CASTG 1 cut(s) 63
TseI GCWGC 2 cut(s) 246, 488
TspDTI ATGAA 3 cut(s) 552, 560, 696
TspRI CASTG 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 230
Zsp2I ATGCAT 1 cut(s) 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.