Rmu_sc0000733.1_g000003

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000733.1
OG0012515
Physical Location & Seq
Forward (+)
17551 .. 19953
2403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000733.1_g000003.1.cds

Sequence Viewer

Length: 693 bp
atgtggaggaaagccacagcattctcagggtttggtgccacactgagccaccacctatgccggcgccactccaccgccaccgccaccgccacggctgtgaactcgatgctcctccgctccctgaaagagcactatctggaagtgtccaaaatgacccctccccctaaagtcaaccctccctcccctttcaccgtcgtcaagggctcgctcgacggcgccggtcccgtgctcaagcgcagctacggcgacgaacaaatcagcatatcggtcatgcgaatggataatattattcccggcgcaggtgccgccgccggaggagaagacgacgacgacgacgacgacatcaaccagttgttcctacacgtcgaggtttcgaagccgggacggaaggagtctctgctttttctatgtgggctgtatccggacgccttaggcattcactctgtctctatcaggcctatggccgacgcctctgattacgctgcgcctcgttcttcagcatatactggccctctttttgaagatcttgatgaagggatgaaggatgcattccacagctacatagaagagcggggtgtgggtgatagtctttttccatttcttcgagcatggctatacgtcaaagaccatcgtaatcttatgcgctggtttaaaacagtaggatcatttgttaatgaaaccaagtcagtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

230

Amino Acids

25.3

Weight (kDa)

6.05

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32605
fragaria_vesca FvH4_7g05420 FvH4_7g05420 FvH4_7g05470 FvH4_7g05470
malus_domestica MD02G1258000.v1.1
prunus_persica Prupe.2G074600_v2.0.a1
pyrus_communis pycom02g21920 pycom07g04810
rosa_chinensis RchiOBHm_Chr1g0332231
rosa_laevigata RLG00000029684
rosa_multiflora Rmu_sc0000733.1_g000003
rosa_roxburghii Rroxscaffold_4G00318340
rosa_rugosa Rorug01G0099100
rosa_samantha Rh1AG122900 Rh1BG094000 Rh1CG117500 Rh1DG128300
rosa_wichuraiana Rw1G010020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 290
Acc36I ACCTGC 1 cut(s) 290
AccB1I GGYRCC 4 cut(s) 35, 63, 215, 302
AccBSI CCGCTC 2 cut(s) 117, 571
AccIII TCCGGA 1 cut(s) 421
AciI CCGC 7 cut(s) 75, 81, 87, 115, 306, 309, 571
AclWI GGATC 1 cut(s) 670
AcoI YGGCCR 1 cut(s) 462
AcuI CTGAAG 1 cut(s) 480
AcyI GRCGYC 4 cut(s) 64, 216, 426, 468
AfiI CCNNNNNNNGG 1 cut(s) 299
AflIII ACRYGT 1 cut(s) 361
AgsI TTSAA 1 cut(s) 521
AjiI CACGTC 1 cut(s) 364
AleI CACNNNNGTG 1 cut(s) 95
AluBI AGCT 2 cut(s) 240, 558
AluI AGCT 2 cut(s) 240, 558
Alw21I GWGCWC 2 cut(s) 132, 231
Alw26I GTCTC 2 cut(s) 399, 451
AlwI GGATC 1 cut(s) 670
Aor13HI TCCGGA 1 cut(s) 421
AoxI GGCC 3 cut(s) 455, 462, 508
ApeKI GCWGC 2 cut(s) 237, 482
AspLEI GCGC 6 cut(s) 66, 218, 237, 299, 487, 645
AspS9I GGNCC 2 cut(s) 221, 509
AsuC2I CCSGG 2 cut(s) 294, 381
AsuHPI GGTGA 2 cut(s) 181, 593
AsuII TTCGAA 1 cut(s) 374
AvaII GGWCC 1 cut(s) 221
AxyI CCTNAGG 1 cut(s) 430
BanI GGYRCC 4 cut(s) 35, 63, 215, 302
BanII GRGCYC 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 327
Bbv12I GWGCWC 2 cut(s) 132, 231
BbvI GCAGC 2 cut(s) 249, 469
BccI CCATC 1 cut(s) 636
BceAI ACGGC 3 cut(s) 108, 229, 259
BciVI GTATCC 1 cut(s) 429
BcnI CCSGG 2 cut(s) 294, 381
BcoDI GTCTC 2 cut(s) 399, 451
BfoI RGCGCY 2 cut(s) 67, 219
BfuAI ACCTGC 1 cut(s) 290
BfuI GTATCC 1 cut(s) 429
BglII AGATCT 1 cut(s) 523
BisI GCNGC 4 cut(s) 238, 306, 309, 483
BlsI GCNGC 4 cut(s) 239, 307, 310, 484
Bme1390I CCNGG 2 cut(s) 294, 381
Bme18I GGWCC 1 cut(s) 221
BmgBI CACGTC 1 cut(s) 364
BmgT120I GGNCC 2 cut(s) 221, 509
BmiI GGNNCC 5 cut(s) 37, 65, 217, 223, 304
BmrFI CCNGG 2 cut(s) 294, 381
BmsI GCATC 2 cut(s) 96, 535
BpiI GAAGAC 1 cut(s) 327
Bpu14I TTCGAA 1 cut(s) 374
BpuEI CTTGAG 1 cut(s) 215
BpuMI CCSGG 2 cut(s) 294, 381
BsaHI GRCGYC 4 cut(s) 64, 216, 426, 468
BsaJI CCNNGG 1 cut(s) 90
BsaWI WCCGGW 1 cut(s) 421
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bsc4I CCNNNNNNNGG 1 cut(s) 299
Bse118I RCCGGY 2 cut(s) 60, 218
Bse1I ACTGG 2 cut(s) 349, 511
Bse21I CCTNAGG 1 cut(s) 430
BseAI TCCGGA 1 cut(s) 421
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 2 cut(s) 543, 550
BseLI CCNNNNNNNGG 1 cut(s) 299
BseMII CTCAG 2 cut(s) 35, 39
BseNI ACTGG 2 cut(s) 349, 511
BseRI GAGGAG 2 cut(s) 101, 330
BseXI GCAGC 2 cut(s) 249, 469
BshFI GGCC 3 cut(s) 457, 464, 510
BshNI GGYRCC 4 cut(s) 35, 63, 215, 302
BsiHKAI GWGCWC 2 cut(s) 132, 231
BsiSI CCGG 6 cut(s) 61, 219, 294, 312, 380, 422
BslFI GGGAC 2 cut(s) 207, 396
BslI CCNNNNNNNGG 1 cut(s) 299
BsmAI GTCTC 2 cut(s) 399, 451
BsmFI GGGAC 2 cut(s) 207, 396
BsmI GAATGC 3 cut(s) 20, 435, 548
BsnI GGCC 3 cut(s) 457, 464, 510
Bsp119I TTCGAA 1 cut(s) 374
Bsp1286I GDGCHC 3 cut(s) 132, 206, 231
Bsp13I TCCGGA 1 cut(s) 421
Bsp143I GATC 2 cut(s) 523, 662
BspACI CCGC 7 cut(s) 75, 81, 87, 115, 306, 309, 571
BspANI GGCC 3 cut(s) 457, 464, 510
BspCNI CTCAG 2 cut(s) 36, 38
BspEI TCCGGA 1 cut(s) 421
BspLI GGNNCC 5 cut(s) 37, 65, 217, 223, 304
BspMI ACCTGC 1 cut(s) 290
BspPI GGATC 1 cut(s) 670
BspQI GCTCTTC 1 cut(s) 561
BspT104I TTCGAA 1 cut(s) 374
BspT107I GGYRCC 4 cut(s) 35, 63, 215, 302
BsrBI CCGCTC 2 cut(s) 117, 571
BsrFI RCCGGY 2 cut(s) 60, 218
BsrI ACTGG 2 cut(s) 349, 511
BssAI RCCGGY 2 cut(s) 60, 218
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 2 cut(s) 523, 662
BssNI GRCGYC 4 cut(s) 64, 216, 426, 468
Bst4CI ACNGT 2 cut(s) 193, 658
Bst6I CTCTTC 1 cut(s) 561
BstACI GRCGYC 4 cut(s) 64, 216, 426, 468
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 2 cut(s) 62, 206
BstDEI CTNAG 3 cut(s) 25, 44, 430
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 2 cut(s) 543, 550
BstH2I RGCGCY 2 cut(s) 67, 219
BstHHI GCGC 6 cut(s) 66, 218, 237, 299, 487, 645
BstKTI GATC 2 cut(s) 526, 665
BstMAI GTCTC 2 cut(s) 399, 451
BstMBI GATC 2 cut(s) 523, 662
BstMWI GCNNNNNNNGC 2 cut(s) 243, 305
BstSCI CCNGG 2 cut(s) 292, 379
BstV1I GCAGC 2 cut(s) 249, 469
BstV2I GAAGAC 1 cut(s) 327
BstX2I RGATCY 1 cut(s) 523
BstYI RGATCY 1 cut(s) 523
Bsu36I CCTNAGG 1 cut(s) 430
BsuI GTATCC 1 cut(s) 429
BsuRI GGCC 3 cut(s) 457, 464, 510
BtgI CCRYGG 1 cut(s) 90
BtrI CACGTC 1 cut(s) 364
BtsCI GGATG 2 cut(s) 543, 550
BtsIMutI CAGTG 1 cut(s) 41
BveI ACCTGC 1 cut(s) 290
Cac8I GCNNGC 2 cut(s) 62, 206
CfoI GCGC 6 cut(s) 66, 218, 237, 299, 487, 645
Cfr10I RCCGGY 2 cut(s) 60, 218
Cfr13I GGNCC 2 cut(s) 221, 509
CseI GACGC 2 cut(s) 434, 476
CviAII CATG 2 cut(s) 271, 609
DdeI CTNAG 3 cut(s) 25, 44, 430
DinI GGCGCC 2 cut(s) 65, 217
DpnI GATC 2 cut(s) 525, 664
DpnII GATC 2 cut(s) 523, 662
DraI TTTAAA 1 cut(s) 652
EaeI YGGCCR 1 cut(s) 462
Eam1104I CTCTTC 1 cut(s) 561
EarI CTCTTC 1 cut(s) 561
Eco147I AGGCCT 1 cut(s) 457
Eco24I GRGCYC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 221
Eco57I CTGAAG 1 cut(s) 480
Eco81I CCTNAGG 1 cut(s) 430
EcoT22I ATGCAT 1 cut(s) 550
EcoT38I GRGCYC 1 cut(s) 206
EgeI GGCGCC 2 cut(s) 65, 217
EheI GGCGCC 2 cut(s) 65, 217
FaeI CATG 2 cut(s) 274, 612
FaqI GGGAC 2 cut(s) 207, 396
FatI CATG 2 cut(s) 270, 608
FauI CCCGC 1 cut(s) 564
Fnu4HI GCNGC 4 cut(s) 238, 306, 309, 483
FokI GGATG 2 cut(s) 550, 557
FriOI GRGCYC 1 cut(s) 206
Fsp4HI GCNGC 4 cut(s) 238, 306, 309, 483
GlaI GCGC 6 cut(s) 65, 217, 236, 298, 486, 644
GluI GCNGC 4 cut(s) 238, 306, 309, 483
HaeII RGCGCY 2 cut(s) 67, 219
HaeIII GGCC 3 cut(s) 457, 464, 510
HapII CCGG 6 cut(s) 61, 219, 294, 312, 380, 422
HgaI GACGC 2 cut(s) 434, 476
HhaI GCGC 6 cut(s) 66, 218, 237, 299, 487, 645
Hin1I GRCGYC 4 cut(s) 64, 216, 426, 468
Hin1II CATG 2 cut(s) 274, 612
Hin6I GCGC 6 cut(s) 64, 216, 235, 297, 485, 643
HinP1I GCGC 6 cut(s) 64, 216, 235, 297, 485, 643
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 1 cut(s) 392
HpaII CCGG 6 cut(s) 61, 219, 294, 312, 380, 422
HphI GGTGA 2 cut(s) 181, 593
Hpy166II GTNNAC 2 cut(s) 100, 172
Hpy188I TCNGA 1 cut(s) 475
Hpy188III TCNNGA 3 cut(s) 137, 422, 527
Hpy8I GTNNAC 2 cut(s) 100, 172
HpyAV CCTTC 3 cut(s) 382, 527, 535
HpyCH4III ACNGT 2 cut(s) 193, 658
HpyCH4IV ACGT 2 cut(s) 363, 618
HpyCH4V TGCA 1 cut(s) 548
HpyF10VI GCNNNNNNNGC 2 cut(s) 243, 305
HpyF3I CTNAG 3 cut(s) 25, 44, 430
HpySE526I ACGT 2 cut(s) 363, 618
Hsp92I GRCGYC 4 cut(s) 64, 216, 426, 468
Hsp92II CATG 2 cut(s) 274, 612
HspAI GCGC 6 cut(s) 64, 216, 235, 297, 485, 643
KasI GGCGCC 2 cut(s) 63, 215
Kpn2I TCCGGA 1 cut(s) 421
KroI GCCGGC 1 cut(s) 60
KroNI GCCGGC 1 cut(s) 62
Kzo9I GATC 2 cut(s) 523, 662
LguI GCTCTTC 1 cut(s) 561
LmnI GCTCC 2 cut(s) 114, 122
Lsp1109I GCAGC 2 cut(s) 249, 469
LweI GCATC 2 cut(s) 96, 535
MaeII ACGT 2 cut(s) 363, 618
MalI GATC 2 cut(s) 525, 664
MbiI CCGCTC 2 cut(s) 117, 571
MboI GATC 2 cut(s) 523, 662
MboII GAAGA 5 cut(s) 332, 486, 533, 578, 593
MflI RGATCY 1 cut(s) 523
MhlI GDGCHC 3 cut(s) 132, 206, 231
Mly113I GGCGCC 2 cut(s) 64, 216
MlyI GAGTC 1 cut(s) 401
MnlI CCTC 9 cut(s) 122, 168, 186, 190, 308, 361, 481, 498, 522
Mph1103I ATGCAT 1 cut(s) 550
MroI TCCGGA 1 cut(s) 421
MroNI GCCGGC 1 cut(s) 60
MseI TTAA 3 cut(s) 651, 672, 691
MslI CAYNNNNRTG 2 cut(s) 95, 275
MspI CCGG 6 cut(s) 61, 219, 294, 312, 380, 422
MspR9I CCNGG 2 cut(s) 294, 381
Mva1269I GAATGC 3 cut(s) 20, 435, 548
MwoI GCNNNNNNNGC 2 cut(s) 243, 305
NaeI GCCGGC 1 cut(s) 62
NarI GGCGCC 2 cut(s) 64, 216
NciI CCSGG 2 cut(s) 294, 381
NdeII GATC 2 cut(s) 523, 662
NgoMIV GCCGGC 1 cut(s) 60
NlaIII CATG 2 cut(s) 274, 612
NlaIV GGNNCC 5 cut(s) 37, 65, 217, 223, 304
NsiI ATGCAT 1 cut(s) 550
NspV TTCGAA 1 cut(s) 374
OliI CACNNNNGTG 1 cut(s) 95
PaqCI CACCTGC 1 cut(s) 290
PceI AGGCCT 1 cut(s) 457
PciSI GCTCTTC 1 cut(s) 561
PcsI WCGNNNNNNNCGW 3 cut(s) 330, 333, 336
PctI GAATGC 3 cut(s) 20, 435, 548
PdiI GCCGGC 1 cut(s) 62
PkrI GCNGC 4 cut(s) 239, 307, 310, 484
PleI GAGTC 1 cut(s) 400
PluTI GGCGCC 2 cut(s) 67, 219
PpsI GAGTC 1 cut(s) 400
PspN4I GGNNCC 5 cut(s) 37, 65, 217, 223, 304
PspPI GGNCC 2 cut(s) 221, 509
PsuI RGATCY 1 cut(s) 523
RseI CAYNNNNRTG 2 cut(s) 95, 275
SapI GCTCTTC 1 cut(s) 561
SaqAI TTAA 3 cut(s) 651, 672, 691
SatI GCNGC 4 cut(s) 238, 306, 309, 483
Sau3AI GATC 2 cut(s) 523, 662
Sau96I GGNCC 2 cut(s) 221, 509
SchI GAGTC 1 cut(s) 401
ScrFI CCNGG 2 cut(s) 294, 381
SduI GDGCHC 3 cut(s) 132, 206, 231
SetI ASST 7 cut(s) 57, 242, 304, 366, 372, 560, 621
SfaNI GCATC 2 cut(s) 96, 535
SfoI GGCGCC 2 cut(s) 65, 217
SfuI TTCGAA 1 cut(s) 374
SinI GGWCC 1 cut(s) 221
SmiMI CAYNNNNRTG 2 cut(s) 95, 275
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
SseBI AGGCCT 1 cut(s) 457
SsiI CCGC 7 cut(s) 75, 81, 87, 115, 306, 309, 571
SspDI GGCGCC 2 cut(s) 63, 215
SspI AATATT 1 cut(s) 286
StuI AGGCCT 1 cut(s) 457
StyD4I CCNGG 2 cut(s) 292, 379
TaaI ACNGT 2 cut(s) 193, 658
TaiI ACGT 2 cut(s) 366, 621
TaqI TCGA 5 cut(s) 104, 210, 366, 374, 604
TaqII GACCGA 1 cut(s) 256
TauI GCSGC 2 cut(s) 308, 311
Tru1I TTAA 3 cut(s) 651, 672, 691
Tru9I TTAA 3 cut(s) 651, 672, 691
TscAI CASTG 1 cut(s) 48
TseI GCWGC 2 cut(s) 237, 482
TspDTI ATGAA 3 cut(s) 546, 554, 690
TspGWI ACGGA 1 cut(s) 400
TspRI CASTG 1 cut(s) 48
VpaK11BI GGWCC 1 cut(s) 221
Zsp2I ATGCAT 1 cut(s) 550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.