MD02G1258000.v1.1

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0012515
Physical Location & Seq
Forward (+)
31136964 .. 31139938
2975 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1258000.v1.1.491

Sequence Viewer

Length: 699 bp
ATGTGGAGGAAAGCCATAGCAACAGCAGCAGCAACACGCTTCGGCGCACTTCACCACCCGTGGCGCACGATAGCACGCCCCCACTCAACCACCGCATCCCCCTCCGCCGCCGTCGACTCCGTTATCCTGCGCTCCCTCAAGGAACACTATCTCGATGTCCAGAAAATGAACCCTCCCCCAAAAATCAACCCTCCCTCGCCCTTCACAGTCGTCCAGGGCTCGCTCGACGGCAACGGCCCCGCTCTCAAGCGGATTTTCGGCCGGGAGGAGATCACCATATCGGTGATGCGAATGGAAAATATTATTCCTGGCGATGGCGGAGAAGACGACGATGCCGATGACACGAACCAGTTGTTCCTACACCTCGATGTTTCAAAGCCCGGGCAGAAGGAGTCTCTACATTTTCTTTGTGCCCTGTATCCGGATGCTTTGGGAATTCACTCTGTCTCATTGCGCAAAATCGCCGATTTATCGAGCTCTCGTGATGTTCTTTCCACGTATAATGGCCCTGTTTTTGAAGATCTTGATGAAACAATGAGGGATGCATTCCACAATTACCTAGAAGAGCGGGGTGTGAGTGAAAGTCTCTTTCCATTTCTTCGAGCATGGCTTTATGTCAAAGATCATCGTAATCTTTTGCGATGGTTCAAATCAGTGGGAACATTCATTAATGAAAACAAGAAGGTTAAGGATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

233

Amino Acids

26.08

Weight (kDa)

6.5

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 82 - 223 2.4e-23 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32605
fragaria_vesca FvH4_7g05420 FvH4_7g05420 FvH4_7g05470 FvH4_7g05470
malus_domestica MD02G1258000.v1.1
prunus_persica Prupe.2G074600_v2.0.a1
pyrus_communis pycom02g21920 pycom07g04810
rosa_chinensis RchiOBHm_Chr1g0332231
rosa_laevigata RLG00000029684
rosa_multiflora Rmu_sc0000733.1_g000003
rosa_roxburghii Rroxscaffold_4G00318340
rosa_rugosa Rorug01G0099100
rosa_samantha Rh1AG122900 Rh1BG094000 Rh1CG117500 Rh1DG128300
rosa_wichuraiana Rw1G010020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 455
AccBSI CCGCTC 2 cut(s) 242, 568
AccI GTMKAC 1 cut(s) 114
AccIII TCCGGA 1 cut(s) 421
AciI CCGC 7 cut(s) 93, 105, 108, 240, 250, 318, 568
AcoI YGGCCR 1 cut(s) 259
AcsI RAATTY 1 cut(s) 435
AfiI CCNNNNNNNGG 2 cut(s) 314, 421
AgsI TTSAA 3 cut(s) 375, 518, 649
AjnI CCWGG 2 cut(s) 213, 307
AluBI AGCT 1 cut(s) 477
AluI AGCT 1 cut(s) 477
Alw21I GWGCWC 1 cut(s) 479
Alw26I GTCTC 3 cut(s) 399, 451, 590
Ama87I CYCGRG 1 cut(s) 380
Aor13HI TCCGGA 1 cut(s) 421
AoxI GGCC 3 cut(s) 235, 259, 505
ApeKI GCWGC 2 cut(s) 26, 29
ApoI RAATTY 1 cut(s) 435
AseI ATTAAT 1 cut(s) 669
AspLEI GCGC 4 cut(s) 47, 66, 132, 456
AspS9I GGNCC 2 cut(s) 236, 506
AsuC2I CCSGG 3 cut(s) 263, 381, 382
AsuHPI GGTGA 3 cut(s) 44, 265, 295
AvaI CYCGRG 1 cut(s) 380
BaeGI GKGCMC 1 cut(s) 415
BanII GRGCYC 2 cut(s) 221, 479
BauI CACGAG 1 cut(s) 480
BbsI GAAGAC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 479
BbvI GCAGC 2 cut(s) 38, 41
BccI CCATC 2 cut(s) 308, 636
BceAI ACGGC 3 cut(s) 95, 244, 250
BciT130I CCWGG 2 cut(s) 215, 309
BciVI GTATCC 1 cut(s) 429
BcnI CCSGG 3 cut(s) 263, 381, 382
BcoDI GTCTC 3 cut(s) 399, 451, 590
BfaI CTAG 1 cut(s) 560
BfuI GTATCC 1 cut(s) 429
BglII AGATCT 1 cut(s) 520
BisI GCNGC 3 cut(s) 27, 30, 108
BlsI GCNGC 3 cut(s) 28, 31, 109
Bme1390I CCNGG 5 cut(s) 215, 263, 309, 381, 382
BmeT110I CYCGRG 1 cut(s) 380
BmgT120I GGNCC 2 cut(s) 236, 506
BmiI GGNNCC 1 cut(s) 238
BmrFI CCNGG 5 cut(s) 215, 263, 309, 381, 382
BmsI GCATC 5 cut(s) 104, 276, 322, 415, 532
BpiI GAAGAC 1 cut(s) 330
BpuEI CTTGAG 2 cut(s) 122, 230
BpuMI CCSGG 3 cut(s) 263, 381, 382
BsaAI YACGTR 1 cut(s) 498
BsaJI CCNNGG 3 cut(s) 59, 214, 380
BsaWI WCCGGW 1 cut(s) 421
Bsc4I CCNNNNNNNGG 2 cut(s) 314, 421
Bse1I ACTGG 1 cut(s) 349
Bse3DI GCAATG 1 cut(s) 449
BseAI TCCGGA 1 cut(s) 421
BseBI CCWGG 2 cut(s) 215, 309
BseDI CCNNGG 3 cut(s) 59, 214, 380
BseGI GGATG 3 cut(s) 95, 430, 547
BseLI CCNNNNNNNGG 2 cut(s) 314, 421
BseMI GCAATG 1 cut(s) 449
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 1 cut(s) 281
BseSI GKGCMC 1 cut(s) 415
BseX3I CGGCCG 1 cut(s) 259
BseXI GCAGC 2 cut(s) 38, 41
Bsh1285I CGRYCG 1 cut(s) 262
BshFI GGCC 3 cut(s) 237, 261, 507
BsiEI CGRYCG 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 479
BsiHKCI CYCGRG 1 cut(s) 380
BsiSI CCGG 3 cut(s) 262, 381, 422
BslI CCNNNNNNNGG 2 cut(s) 314, 421
BsmAI GTCTC 3 cut(s) 399, 451, 590
BsmI GAATGC 1 cut(s) 545
BsnI GGCC 3 cut(s) 237, 261, 507
BsoBI CYCGRG 1 cut(s) 380
Bsp1286I GDGCHC 3 cut(s) 221, 415, 479
Bsp13I TCCGGA 1 cut(s) 421
Bsp143I GATC 3 cut(s) 270, 520, 622
BspACI CCGC 7 cut(s) 93, 105, 108, 240, 250, 318, 568
BspANI GGCC 3 cut(s) 237, 261, 507
BspEI TCCGGA 1 cut(s) 421
BspLI GGNNCC 1 cut(s) 238
BspQI GCTCTTC 1 cut(s) 558
BsrBI CCGCTC 2 cut(s) 242, 568
BsrDI GCAATG 1 cut(s) 449
BsrI ACTGG 1 cut(s) 349
BssECI CCNNGG 3 cut(s) 59, 214, 380
BssMI GATC 3 cut(s) 270, 520, 622
BssSI CACGAG 1 cut(s) 480
Bst2BI CACGAG 1 cut(s) 480
Bst2UI CCWGG 2 cut(s) 215, 309
Bst4CI ACNGT 1 cut(s) 208
Bst6I CTCTTC 1 cut(s) 558
BstBAI YACGTR 1 cut(s) 498
BstC8I GCNNGC 2 cut(s) 76, 221
BstDEI CTNAG 1 cut(s) 696
BstDSI CCRYGG 1 cut(s) 59
BstF5I GGATG 3 cut(s) 95, 430, 547
BstHHI GCGC 4 cut(s) 47, 66, 132, 456
BstKTI GATC 3 cut(s) 273, 523, 625
BstMAI GTCTC 3 cut(s) 399, 451, 590
BstMBI GATC 3 cut(s) 270, 520, 622
BstMCI CGRYCG 1 cut(s) 262
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNI CCWGG 2 cut(s) 215, 309
BstSCI CCNGG 5 cut(s) 213, 261, 307, 379, 380
BstSLI GKGCMC 1 cut(s) 415
BstV1I GCAGC 2 cut(s) 38, 41
BstV2I GAAGAC 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 520
BstYI RGATCY 1 cut(s) 520
BstZI CGGCCG 1 cut(s) 259
BsuI GTATCC 1 cut(s) 429
BsuRI GGCC 3 cut(s) 237, 261, 507
BtgI CCRYGG 1 cut(s) 59
BtgZI GCGATG 2 cut(s) 327, 655
BtsCI GGATG 3 cut(s) 95, 430, 547
BtsIMutI CAGTG 1 cut(s) 660
Cac8I GCNNGC 2 cut(s) 76, 221
CfoI GCGC 4 cut(s) 47, 66, 132, 456
Cfr13I GGNCC 2 cut(s) 236, 506
Cfr9I CCCGGG 1 cut(s) 380
CviAII CATG 1 cut(s) 606
CviJI RGCY 8 cut(s) 14, 219, 237, 261, 379, 477, 507, 610
CviKI_1 RGCY 8 cut(s) 14, 219, 237, 261, 379, 477, 507, 610
DdeI CTNAG 1 cut(s) 696
DpnI GATC 3 cut(s) 272, 522, 624
DpnII GATC 3 cut(s) 270, 520, 622
EaeI YGGCCR 1 cut(s) 259
EagI CGGCCG 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
EciI GGCGGA 2 cut(s) 94, 333
Ecl136II GAGCTC 1 cut(s) 477
EclXI CGGCCG 1 cut(s) 259
Eco24I GRGCYC 2 cut(s) 221, 479
Eco52I CGGCCG 1 cut(s) 259
Eco53kI GAGCTC 1 cut(s) 477
Eco88I CYCGRG 1 cut(s) 380
EcoICRI GAGCTC 1 cut(s) 477
EcoRI GAATTC 1 cut(s) 435
EcoRII CCWGG 2 cut(s) 213, 307
EcoT22I ATGCAT 1 cut(s) 547
EcoT38I GRGCYC 2 cut(s) 221, 479
FaeI CATG 1 cut(s) 609
FaiI YATR 5 cut(s) 17, 278, 501, 607, 615
FatI CATG 1 cut(s) 605
FauI CCCGC 2 cut(s) 247, 561
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 3 cut(s) 27, 30, 108
FokI GGATG 3 cut(s) 82, 437, 554
FriOI GRGCYC 2 cut(s) 221, 479
Fsp4HI GCNGC 3 cut(s) 27, 30, 108
FspBI CTAG 1 cut(s) 560
FspI TGCGCA 1 cut(s) 455
GlaI GCGC 4 cut(s) 46, 65, 131, 455
GluI GCNGC 3 cut(s) 27, 30, 108
HaeIII GGCC 3 cut(s) 237, 261, 507
HapII CCGG 3 cut(s) 262, 381, 422
HhaI GCGC 4 cut(s) 47, 66, 132, 456
Hin1II CATG 1 cut(s) 609
Hin6I GCGC 4 cut(s) 45, 64, 130, 454
HinP1I GCGC 4 cut(s) 45, 64, 130, 454
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 3 cut(s) 116, 392, 692
HpaII CCGG 3 cut(s) 262, 381, 422
HphI GGTGA 3 cut(s) 44, 265, 295
Hpy166II GTNNAC 1 cut(s) 115
Hpy188III TCNNGA 5 cut(s) 152, 160, 422, 482, 524
Hpy8I GTNNAC 1 cut(s) 115
Hpy99I CGWCG 3 cut(s) 116, 230, 332
HpyAV CCTTC 3 cut(s) 211, 382, 676
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 1 cut(s) 497
HpyCH4V TGCA 1 cut(s) 545
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 1 cut(s) 696
HpySE526I ACGT 1 cut(s) 497
Hsp92II CATG 1 cut(s) 609
HspAI GCGC 4 cut(s) 45, 64, 130, 454
Kpn2I TCCGGA 1 cut(s) 421
Kzo9I GATC 3 cut(s) 270, 520, 622
LguI GCTCTTC 1 cut(s) 558
LmnI GCTCC 1 cut(s) 137
Lsp1109I GCAGC 2 cut(s) 38, 41
LweI GCATC 5 cut(s) 104, 276, 322, 415, 532
MaeI CTAG 1 cut(s) 560
MaeII ACGT 1 cut(s) 497
MalI GATC 3 cut(s) 272, 522, 624
MbiI CCGCTC 2 cut(s) 242, 568
MboI GATC 3 cut(s) 270, 520, 622
MboII GAAGA 4 cut(s) 335, 530, 575, 590
MflI RGATCY 1 cut(s) 520
MhlI GDGCHC 3 cut(s) 221, 415, 479
MluCI AATT 2 cut(s) 435, 553
MlyI GAGTC 2 cut(s) 110, 401
MnlI CCTC 8 cut(s) 112, 146, 183, 201, 205, 259, 374, 531
Mph1103I ATGCAT 1 cut(s) 547
MroI TCCGGA 1 cut(s) 421
MseI TTAA 2 cut(s) 669, 687
MslI CAYNNNNRTG 2 cut(s) 281, 366
MspI CCGG 3 cut(s) 262, 381, 422
MspR9I CCNGG 5 cut(s) 215, 263, 309, 381, 382
Mva1269I GAATGC 1 cut(s) 545
MvaI CCWGG 2 cut(s) 215, 309
MwoI GCNNNNNNNGC 1 cut(s) 26
NciI CCSGG 3 cut(s) 263, 381, 382
NdeII GATC 3 cut(s) 270, 520, 622
NlaIII CATG 1 cut(s) 609
NlaIV GGNNCC 1 cut(s) 238
NsbI TGCGCA 1 cut(s) 455
NsiI ATGCAT 1 cut(s) 547
PciSI GCTCTTC 1 cut(s) 558
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PctI GAATGC 1 cut(s) 545
PfeI GAWTC 1 cut(s) 692
PkrI GCNGC 3 cut(s) 28, 31, 109
PleI GAGTC 2 cut(s) 110, 400
PpsI GAGTC 2 cut(s) 110, 400
Ppu21I YACGTR 1 cut(s) 498
PshBI ATTAAT 1 cut(s) 669
Psp124BI GAGCTC 1 cut(s) 479
Psp6I CCWGG 2 cut(s) 213, 307
PspGI CCWGG 2 cut(s) 213, 307
PspN4I GGNNCC 1 cut(s) 238
PspPI GGNCC 2 cut(s) 236, 506
PsuI RGATCY 1 cut(s) 520
RseI CAYNNNNRTG 2 cut(s) 281, 366
SacI GAGCTC 1 cut(s) 479
SalI GTCGAC 1 cut(s) 113
SapI GCTCTTC 1 cut(s) 558
SaqAI TTAA 2 cut(s) 669, 687
SatI GCNGC 3 cut(s) 27, 30, 108
Sau3AI GATC 3 cut(s) 270, 520, 622
Sau96I GGNCC 2 cut(s) 236, 506
SchI GAGTC 2 cut(s) 110, 401
ScrFI CCNGG 5 cut(s) 215, 263, 309, 381, 382
SduI GDGCHC 3 cut(s) 221, 415, 479
SetI ASST 5 cut(s) 366, 479, 500, 561, 687
SfaNI GCATC 5 cut(s) 104, 276, 322, 415, 532
SmaI CCCGGG 1 cut(s) 382
SmiMI CAYNNNNRTG 2 cut(s) 281, 366
SmlI CTYRAG 2 cut(s) 137, 245
SmoI CTYRAG 2 cut(s) 137, 245
SrfI GCCCGGGC 1 cut(s) 382
Sse9I AATT 2 cut(s) 435, 553
SsiI CCGC 7 cut(s) 93, 105, 108, 240, 250, 318, 568
SspI AATATT 1 cut(s) 301
SspMI CTAG 1 cut(s) 560
SstI GAGCTC 1 cut(s) 479
StyD4I CCNGG 5 cut(s) 213, 261, 307, 379, 380
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 1 cut(s) 500
TaqI TCGA 6 cut(s) 114, 153, 225, 366, 473, 601
TasI AATT 2 cut(s) 435, 553
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 1 cut(s) 692
Tru1I TTAA 2 cut(s) 669, 687
Tru9I TTAA 2 cut(s) 669, 687
TscAI CASTG 1 cut(s) 660
TseI GCWGC 2 cut(s) 26, 29
TspDTI ATGAA 4 cut(s) 182, 543, 655, 687
TspGWI ACGGA 1 cut(s) 109
TspMI CCCGGG 1 cut(s) 380
TspRI CASTG 1 cut(s) 660
VspI ATTAAT 1 cut(s) 669
XapI RAATTY 1 cut(s) 435
XmaI CCCGGG 1 cut(s) 380
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 1 cut(s) 560
Zsp2I ATGCAT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.