pycom02g21920

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0012515
Physical Location & Seq
Forward (+)
20078141 .. 20080589
2449 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g21920.3

Sequence Viewer

Length: 741 bp
ATGGAAGGGCAAAGGGTTTCGAACTTTGGAGAAAAGCCGCTTAAGGGTTTAGGAGAAGAAGAAGCCGGCACCGCCACGGTGGGAGGACTGCCGAAATCACAGACCAAAATGTGGAGGAAGGCCATAGCAACAGCAGCAGCAACACGCTTCGGCTCACTTCACCACCCATGGCGCACGATAGCACGCCCCCACTCAACCACCGCATCCCCCTCCGCTGCCGTCGACTCCGTTATCCTGCGCTCCCTCAAGGAACACTATCTCGATGTCCAGAAAATGAACCCTCCCCCAAAAATCAATCCTCCCTCGCCCTTTACAGTCGTCCAGGGCTCGCTCGACGGCAACGGCCCCGCGCTCAAGCGGATTTTCGGCCGGGAGGAGATCACCATATCGGTGATGCGAATGGCAAATATTATTCCTGGCGATGGCGGAGAAGACGACGATGCCGATGACACGAACCAGTTGTTCCTACACCTTGATGTTTCAAAGCCCGGGCAGAAGGAGTCTCTACATTTTCTTTGTGCCCTGTATCCGGATGCTTTGGGAATTCACTCTGTCTCATTGCGCAAAATCGCCGATTTATCGAGCTCTCGTGATGTTCTTTCCACATATAATGGCCCTGTTTTTGAAGATCTTAATGAAACGATGAGGGATGCATTCCACAATTACCTACAAGAGCGGGGTGTGAGTGAAAGTCTCTTTCCATTTCTTCGAGCATGGCTTTATGTCAAAGATCGATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

247

Amino Acids

27.1

Weight (kDa)

6.45

Isoelectric Point (pI)

43.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32605
fragaria_vesca FvH4_7g05420 FvH4_7g05420 FvH4_7g05470 FvH4_7g05470
malus_domestica MD02G1258000.v1.1
prunus_persica Prupe.2G074600_v2.0.a1
pyrus_communis pycom02g21920 pycom07g04810
rosa_chinensis RchiOBHm_Chr1g0332231
rosa_laevigata RLG00000029684
rosa_multiflora Rmu_sc0000733.1_g000003
rosa_roxburghii Rroxscaffold_4G00318340
rosa_rugosa Rorug01G0099100
rosa_samantha Rh1AG122900 Rh1BG094000 Rh1CG117500 Rh1DG128300
rosa_wichuraiana Rw1G010020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 563
AccB1I GGYRCC 1 cut(s) 68
AccB7I CCANNNNNTGG 1 cut(s) 111
AccBSI CCGCTC 1 cut(s) 676
AccI GTMKAC 1 cut(s) 222
AccII CGCG 1 cut(s) 350
AccIII TCCGGA 1 cut(s) 529
AciI CCGC 8 cut(s) 38, 72, 201, 213, 348, 358, 426, 676
AcoI YGGCCR 1 cut(s) 367
AcsI RAATTY 1 cut(s) 543
AfiI CCNNNNNNNGG 4 cut(s) 44, 111, 422, 529
AflII CTTAAG 1 cut(s) 41
AgsI TTSAA 2 cut(s) 483, 626
AjnI CCWGG 2 cut(s) 321, 415
AluBI AGCT 1 cut(s) 585
AluI AGCT 1 cut(s) 585
Alw21I GWGCWC 1 cut(s) 587
Alw26I GTCTC 3 cut(s) 507, 559, 698
Ama87I CYCGRG 1 cut(s) 488
Aor13HI TCCGGA 1 cut(s) 529
AoxI GGCC 4 cut(s) 120, 343, 367, 613
ApeKI GCWGC 3 cut(s) 134, 137, 215
ApoI RAATTY 1 cut(s) 543
AspLEI GCGC 4 cut(s) 174, 240, 352, 564
AspS9I GGNCC 2 cut(s) 344, 614
AsuC2I CCSGG 3 cut(s) 371, 489, 490
AsuHPI GGTGA 3 cut(s) 152, 373, 403
AsuII TTCGAA 1 cut(s) 20
AvaI CYCGRG 1 cut(s) 488
BaeGI GKGCMC 1 cut(s) 523
BanI GGYRCC 1 cut(s) 68
BanII GRGCYC 2 cut(s) 329, 587
BauI CACGAG 1 cut(s) 588
BbsI GAAGAC 1 cut(s) 438
Bbv12I GWGCWC 1 cut(s) 587
BbvI GCAGC 3 cut(s) 146, 149, 202
BccI CCATC 1 cut(s) 416
BceAI ACGGC 3 cut(s) 203, 352, 358
BciT130I CCWGG 2 cut(s) 323, 417
BciVI GTATCC 1 cut(s) 537
BcnI CCSGG 3 cut(s) 371, 489, 490
BcoDI GTCTC 3 cut(s) 507, 559, 698
BfrI CTTAAG 1 cut(s) 41
BfuI GTATCC 1 cut(s) 537
BglII AGATCT 1 cut(s) 628
BisI GCNGC 4 cut(s) 38, 135, 138, 216
BlsI GCNGC 4 cut(s) 39, 136, 139, 217
Bme1390I CCNGG 5 cut(s) 323, 371, 417, 489, 490
BmeT110I CYCGRG 1 cut(s) 488
BmgT120I GGNCC 2 cut(s) 344, 614
BmiI GGNNCC 2 cut(s) 70, 346
BmrFI CCNGG 5 cut(s) 323, 371, 417, 489, 490
BmsI GCATC 5 cut(s) 212, 384, 430, 523, 640
BpiI GAAGAC 1 cut(s) 438
Bpu14I TTCGAA 1 cut(s) 20
BpuEI CTTGAG 2 cut(s) 230, 338
BpuMI CCSGG 3 cut(s) 371, 489, 490
Bsa29I ATCGAT 1 cut(s) 733
BsaJI CCNNGG 4 cut(s) 75, 167, 322, 488
BsaWI WCCGGW 1 cut(s) 529
Bsc4I CCNNNNNNNGG 4 cut(s) 44, 111, 422, 529
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 457
Bse3DI GCAATG 1 cut(s) 557
BseAI TCCGGA 1 cut(s) 529
BseBI CCWGG 2 cut(s) 323, 417
BseCI ATCGAT 1 cut(s) 733
BseDI CCNNGG 4 cut(s) 75, 167, 322, 488
BseGI GGATG 3 cut(s) 203, 538, 655
BseLI CCNNNNNNNGG 4 cut(s) 44, 111, 422, 529
BseMI GCAATG 1 cut(s) 557
BseNI ACTGG 1 cut(s) 457
BseRI GAGGAG 1 cut(s) 389
BseSI GKGCMC 1 cut(s) 523
BseX3I CGGCCG 1 cut(s) 367
BseXI GCAGC 3 cut(s) 146, 149, 202
Bsh1236I CGCG 1 cut(s) 350
Bsh1285I CGRYCG 2 cut(s) 370, 737
BshFI GGCC 4 cut(s) 122, 345, 369, 615
BshNI GGYRCC 1 cut(s) 68
BshVI ATCGAT 1 cut(s) 733
BsiEI CGRYCG 2 cut(s) 370, 737
BsiHKAI GWGCWC 1 cut(s) 587
BsiHKCI CYCGRG 1 cut(s) 488
BsiSI CCGG 4 cut(s) 66, 370, 489, 530
BslI CCNNNNNNNGG 4 cut(s) 44, 111, 422, 529
BsmAI GTCTC 3 cut(s) 507, 559, 698
BsmI GAATGC 1 cut(s) 653
BsnI GGCC 4 cut(s) 122, 345, 369, 615
BsoBI CYCGRG 1 cut(s) 488
Bsp119I TTCGAA 1 cut(s) 20
Bsp1286I GDGCHC 3 cut(s) 329, 523, 587
Bsp13I TCCGGA 1 cut(s) 529
Bsp143I GATC 4 cut(s) 378, 628, 730, 734
Bsp19I CCATGG 1 cut(s) 167
BspACI CCGC 8 cut(s) 38, 72, 201, 213, 348, 358, 426, 676
BspANI GGCC 4 cut(s) 122, 345, 369, 615
BspDI ATCGAT 1 cut(s) 733
BspEI TCCGGA 1 cut(s) 529
BspFNI CGCG 1 cut(s) 350
BspLI GGNNCC 2 cut(s) 70, 346
BspT104I TTCGAA 1 cut(s) 20
BspT107I GGYRCC 1 cut(s) 68
BspTI CTTAAG 1 cut(s) 41
BsrBI CCGCTC 1 cut(s) 676
BsrDI GCAATG 1 cut(s) 557
BsrFI RCCGGY 1 cut(s) 65
BsrI ACTGG 1 cut(s) 457
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 4 cut(s) 75, 167, 322, 488
BssMI GATC 4 cut(s) 378, 628, 730, 734
BssSI CACGAG 1 cut(s) 588
BssT1I CCWWGG 1 cut(s) 167
Bst2BI CACGAG 1 cut(s) 588
Bst2UI CCWGG 2 cut(s) 323, 417
Bst4CI ACNGT 2 cut(s) 79, 316
BstAFI CTTAAG 1 cut(s) 41
BstBI TTCGAA 1 cut(s) 20
BstC8I GCNNGC 3 cut(s) 67, 184, 329
BstDSI CCRYGG 2 cut(s) 75, 167
BstF5I GGATG 3 cut(s) 203, 538, 655
BstFNI CGCG 1 cut(s) 350
BstHHI GCGC 4 cut(s) 174, 240, 352, 564
BstKTI GATC 4 cut(s) 381, 631, 733, 737
BstMAI GTCTC 3 cut(s) 507, 559, 698
BstMBI GATC 4 cut(s) 378, 628, 730, 734
BstMCI CGRYCG 2 cut(s) 370, 737
BstMWI GCNNNNNNNGC 2 cut(s) 71, 134
BstNI CCWGG 2 cut(s) 323, 417
BstSCI CCNGG 5 cut(s) 321, 369, 415, 487, 488
BstSLI GKGCMC 1 cut(s) 523
BstUI CGCG 1 cut(s) 350
BstV1I GCAGC 3 cut(s) 146, 149, 202
BstV2I GAAGAC 1 cut(s) 438
BstX2I RGATCY 1 cut(s) 628
BstYI RGATCY 1 cut(s) 628
BstZI CGGCCG 1 cut(s) 367
Bsu15I ATCGAT 1 cut(s) 733
BsuI GTATCC 1 cut(s) 537
BsuRI GGCC 4 cut(s) 122, 345, 369, 615
BsuTUI ATCGAT 1 cut(s) 733
BtgI CCRYGG 2 cut(s) 75, 167
BtgZI GCGATG 1 cut(s) 435
BtsCI GGATG 3 cut(s) 203, 538, 655
Cac8I GCNNGC 3 cut(s) 67, 184, 329
CfoI GCGC 4 cut(s) 174, 240, 352, 564
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 2 cut(s) 344, 614
Cfr9I CCCGGG 1 cut(s) 488
ClaI ATCGAT 1 cut(s) 733
CviAII CATG 2 cut(s) 168, 714
DpnI GATC 4 cut(s) 380, 630, 732, 736
DpnII GATC 4 cut(s) 378, 628, 730, 734
EaeI YGGCCR 1 cut(s) 367
EagI CGGCCG 1 cut(s) 367
EciI GGCGGA 1 cut(s) 441
Ecl136II GAGCTC 1 cut(s) 585
EclXI CGGCCG 1 cut(s) 367
Eco130I CCWWGG 1 cut(s) 167
Eco24I GRGCYC 2 cut(s) 329, 587
Eco52I CGGCCG 1 cut(s) 367
Eco53kI GAGCTC 1 cut(s) 585
Eco88I CYCGRG 1 cut(s) 488
EcoICRI GAGCTC 1 cut(s) 585
EcoRI GAATTC 1 cut(s) 543
EcoRII CCWGG 2 cut(s) 321, 415
EcoT14I CCWWGG 1 cut(s) 167
EcoT22I ATGCAT 1 cut(s) 655
EcoT38I GRGCYC 2 cut(s) 329, 587
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 2 cut(s) 171, 717
FaiI YATR 7 cut(s) 125, 169, 386, 607, 609, 715, 723
FatI CATG 2 cut(s) 167, 713
FauI CCCGC 2 cut(s) 355, 669
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 4 cut(s) 38, 135, 138, 216
FokI GGATG 3 cut(s) 190, 545, 662
FriOI GRGCYC 2 cut(s) 329, 587
Fsp4HI GCNGC 4 cut(s) 38, 135, 138, 216
FspI TGCGCA 1 cut(s) 563
GlaI GCGC 4 cut(s) 173, 239, 351, 563
GluI GCNGC 4 cut(s) 38, 135, 138, 216
HaeIII GGCC 4 cut(s) 122, 345, 369, 615
HapII CCGG 4 cut(s) 66, 370, 489, 530
HhaI GCGC 4 cut(s) 174, 240, 352, 564
Hin1II CATG 2 cut(s) 171, 717
Hin6I GCGC 4 cut(s) 172, 238, 350, 562
HinP1I GCGC 4 cut(s) 172, 238, 350, 562
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HinfI GANTC 2 cut(s) 224, 500
HpaII CCGG 4 cut(s) 66, 370, 489, 530
HphI GGTGA 3 cut(s) 152, 373, 403
Hpy166II GTNNAC 1 cut(s) 223
Hpy188III TCNNGA 4 cut(s) 260, 268, 530, 590
Hpy8I GTNNAC 1 cut(s) 223
Hpy99I CGWCG 3 cut(s) 224, 338, 440
HpyAV CCTTC 2 cut(s) 112, 490
HpyCH4III ACNGT 2 cut(s) 79, 316
HpyCH4V TGCA 1 cut(s) 653
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 134
Hsp92II CATG 2 cut(s) 171, 717
HspAI GCGC 4 cut(s) 172, 238, 350, 562
Kpn2I TCCGGA 1 cut(s) 529
KroI GCCGGC 1 cut(s) 65
KroNI GCCGGC 1 cut(s) 67
Kzo9I GATC 4 cut(s) 378, 628, 730, 734
LmnI GCTCC 1 cut(s) 245
Lsp1109I GCAGC 3 cut(s) 146, 149, 202
LweI GCATC 5 cut(s) 212, 384, 430, 523, 640
MalI GATC 4 cut(s) 380, 630, 732, 736
MbiI CCGCTC 1 cut(s) 676
MboI GATC 4 cut(s) 378, 628, 730, 734
MboII GAAGA 5 cut(s) 68, 71, 443, 638, 698
MflI RGATCY 1 cut(s) 628
MhlI GDGCHC 3 cut(s) 329, 523, 587
MluCI AATT 2 cut(s) 543, 661
MlyI GAGTC 2 cut(s) 218, 509
MnlI CCTC 9 cut(s) 77, 108, 220, 254, 291, 309, 313, 367, 639
Mph1103I ATGCAT 1 cut(s) 655
MroI TCCGGA 1 cut(s) 529
MroNI GCCGGC 1 cut(s) 65
MseI TTAA 2 cut(s) 42, 633
MslI CAYNNNNRTG 2 cut(s) 389, 474
MspA1I CMGCKG 1 cut(s) 215
MspCI CTTAAG 1 cut(s) 41
MspI CCGG 4 cut(s) 66, 370, 489, 530
MspR9I CCNGG 5 cut(s) 323, 371, 417, 489, 490
Mva1269I GAATGC 1 cut(s) 653
MvaI CCWGG 2 cut(s) 323, 417
MvnI CGCG 1 cut(s) 350
MwoI GCNNNNNNNGC 2 cut(s) 71, 134
NaeI GCCGGC 1 cut(s) 67
NciI CCSGG 3 cut(s) 371, 489, 490
NcoI CCATGG 1 cut(s) 167
NdeII GATC 4 cut(s) 378, 628, 730, 734
NgoMIV GCCGGC 1 cut(s) 65
NlaIII CATG 2 cut(s) 171, 717
NlaIV GGNNCC 2 cut(s) 70, 346
NsbI TGCGCA 1 cut(s) 563
NsiI ATGCAT 1 cut(s) 655
NspV TTCGAA 1 cut(s) 20
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PctI GAATGC 1 cut(s) 653
PdiI GCCGGC 1 cut(s) 67
PflMI CCANNNNNTGG 1 cut(s) 111
PkrI GCNGC 4 cut(s) 39, 136, 139, 217
Ple19I CGATCG 1 cut(s) 737
PleI GAGTC 2 cut(s) 218, 508
PpsI GAGTC 2 cut(s) 218, 508
Psp124BI GAGCTC 1 cut(s) 587
Psp6I CCWGG 2 cut(s) 321, 415
PspGI CCWGG 2 cut(s) 321, 415
PspN4I GGNNCC 2 cut(s) 70, 346
PspPI GGNCC 2 cut(s) 344, 614
PsuI RGATCY 1 cut(s) 628
PvuI CGATCG 1 cut(s) 737
RseI CAYNNNNRTG 2 cut(s) 389, 474
SacI GAGCTC 1 cut(s) 587
SalI GTCGAC 1 cut(s) 221
SaqAI TTAA 2 cut(s) 42, 633
SatI GCNGC 4 cut(s) 38, 135, 138, 216
Sau3AI GATC 4 cut(s) 378, 628, 730, 734
Sau96I GGNCC 2 cut(s) 344, 614
SchI GAGTC 2 cut(s) 218, 509
ScrFI CCNGG 5 cut(s) 323, 371, 417, 489, 490
SduI GDGCHC 3 cut(s) 329, 523, 587
SetI ASST 3 cut(s) 474, 587, 669
SfaNI GCATC 5 cut(s) 212, 384, 430, 523, 640
SfuI TTCGAA 1 cut(s) 20
SmaI CCCGGG 1 cut(s) 490
SmiMI CAYNNNNRTG 2 cut(s) 389, 474
SmlI CTYRAG 3 cut(s) 41, 245, 353
SmoI CTYRAG 3 cut(s) 41, 245, 353
SrfI GCCCGGGC 1 cut(s) 490
Sse9I AATT 2 cut(s) 543, 661
SsiI CCGC 8 cut(s) 38, 72, 201, 213, 348, 358, 426, 676
SspI AATATT 1 cut(s) 409
SstI GAGCTC 1 cut(s) 587
StyD4I CCNGG 5 cut(s) 321, 369, 415, 487, 488
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 2 cut(s) 79, 316
TaqI TCGA 7 cut(s) 20, 222, 261, 333, 581, 709, 733
TasI AATT 2 cut(s) 543, 661
TauI GCSGC 1 cut(s) 40
Tru1I TTAA 2 cut(s) 42, 633
Tru9I TTAA 2 cut(s) 42, 633
TseI GCWGC 3 cut(s) 134, 137, 215
TspDTI ATGAA 2 cut(s) 290, 651
TspGWI ACGGA 1 cut(s) 217
TspMI CCCGGG 1 cut(s) 488
Van91I CCANNNNNTGG 1 cut(s) 111
Vha464I CTTAAG 1 cut(s) 41
XapI RAATTY 1 cut(s) 543
XmaI CCCGGG 1 cut(s) 488
XmiI GTMKAC 1 cut(s) 222
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.