Prupe.2G074600_v2.0.a1

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0012515
Physical Location & Seq
Reverse (-)
11274815 .. 11277288
2474 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G074600.1

Sequence Viewer

Length: 708 bp
ATGTGGAGGAAAGCCATAGCAACAACAGCAAGAGGCGTCGGCGCACTCCACCACCCATGGCGCACGATAGCACACGGCCACTCAACCGCGGTCTCCCCCTCCGATGCCGTCAACTCCATCCTCCTCCGCTCCCTCAAAGAGCACTATCTCGACGTCACGAAAATGAACCCTCCTCCCAAAATAAACCCTCCGTCGCCGTTCACCGTCGTCCAGGGCTCGCTCGACGGCAACGGCCCGGCACTCAAGCGGACTTTCGGCGACGAAGAGATCACCATATCGGTGATGCGATTGGCCAATATTGTGCCCGGCGATGGCGGAGAAGACGACGGCGCTGACGATGGCGATGACATCAACCAGTTGTTCCTGCACGTCGACGTTTCGAAGCCCGGGCAGAAGGAGTCTCTGCATTTTCTTTGTGGGTTGTATCCGGACGCTTTGGGGATTCACTCTGTATCCATGCGCCCCAAAGCTGATGCTGCGAGCTCTGTTGAGGACGGTTCCTCCTATACTGGTCCTGTTTTTGAAGATCTTGATGAAAAGATAAGGGATGCATTTCACAACTACATAGAAGAGCGGGGCGTGGGTGATAGTCTCTTTCCATTTCTTCGAGCATGGCTATACGTTAAGGATCATCGTAATCTTATGCGATGGTTCAAGTCAGTGGGAACGTTCATTAATGAAAACAAGACAGCAGTTAAGGATTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

236

Amino Acids

25.85

Weight (kDa)

5.77

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32605
fragaria_vesca FvH4_7g05420 FvH4_7g05420 FvH4_7g05470 FvH4_7g05470
malus_domestica MD02G1258000.v1.1
prunus_persica Prupe.2G074600_v2.0.a1
pyrus_communis pycom02g21920 pycom07g04810
rosa_chinensis RchiOBHm_Chr1g0332231
rosa_laevigata RLG00000029684
rosa_multiflora Rmu_sc0000733.1_g000003
rosa_roxburghii Rroxscaffold_4G00318340
rosa_rugosa Rorug01G0099100
rosa_samantha Rh1AG122900 Rh1BG094000 Rh1CG117500 Rh1DG128300
rosa_wichuraiana Rw1G010020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 156
AccBSI CCGCTC 2 cut(s) 129, 574
AccI GTMKAC 1 cut(s) 372
AccII CGCG 1 cut(s) 89
AccIII TCCGGA 1 cut(s) 427
AciI CCGC 6 cut(s) 87, 89, 127, 247, 315, 574
AclI AACGTT 1 cut(s) 668
AclWI GGATC 1 cut(s) 636
AcoI YGGCCR 2 cut(s) 76, 291
AcyI GRCGYC 2 cut(s) 36, 153
AfiI CCNNNNNNNGG 1 cut(s) 311
AgsI TTSAA 2 cut(s) 524, 655
AjiI CACGTC 1 cut(s) 370
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 2 cut(s) 470, 483
AluI AGCT 2 cut(s) 470, 483
Alw21I GWGCWC 2 cut(s) 144, 485
Alw26I GTCTC 3 cut(s) 97, 405, 596
AlwI GGATC 1 cut(s) 636
Ama87I CYCGRG 1 cut(s) 386
Aor13HI TCCGGA 1 cut(s) 427
AoxI GGCC 3 cut(s) 76, 232, 291
ApeKI GCWGC 1 cut(s) 476
AseI ATTAAT 1 cut(s) 675
AspLEI GCGC 4 cut(s) 44, 63, 332, 462
AspS9I GGNCC 2 cut(s) 233, 512
AsuC2I CCSGG 4 cut(s) 236, 306, 387, 388
AsuHPI GGTGA 4 cut(s) 193, 262, 292, 596
AsuII TTCGAA 1 cut(s) 380
AvaI CYCGRG 1 cut(s) 386
AvaII GGWCC 1 cut(s) 512
BaeGI GKGCMC 1 cut(s) 306
BalI TGGCCA 1 cut(s) 293
BanII GRGCYC 2 cut(s) 218, 485
BbsI GAAGAC 1 cut(s) 327
Bbv12I GWGCWC 2 cut(s) 144, 485
BbvI GCAGC 1 cut(s) 463
BccI CCATC 4 cut(s) 125, 305, 332, 642
BceAI ACGGC 6 cut(s) 91, 92, 181, 241, 247, 343
BciT130I CCWGG 1 cut(s) 212
BciVI GTATCC 2 cut(s) 435, 463
BcnI CCSGG 4 cut(s) 236, 306, 387, 388
BcoDI GTCTC 3 cut(s) 97, 405, 596
BfoI RGCGCY 1 cut(s) 333
BfuI GTATCC 2 cut(s) 435, 463
BglII AGATCT 1 cut(s) 526
BisI GCNGC 1 cut(s) 477
BlsI GCNGC 1 cut(s) 478
Bme1390I CCNGG 5 cut(s) 212, 236, 306, 387, 388
Bme18I GGWCC 1 cut(s) 512
BmeT110I CYCGRG 1 cut(s) 386
BmgBI CACGTC 1 cut(s) 370
BmgT120I GGNCC 2 cut(s) 233, 512
BmiI GGNNCC 1 cut(s) 499
BmrFI CCNGG 5 cut(s) 212, 236, 306, 387, 388
BmsI GCATC 4 cut(s) 94, 273, 463, 538
BpiI GAAGAC 1 cut(s) 327
Bpu14I TTCGAA 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 4 cut(s) 236, 306, 387, 388
BsaHI GRCGYC 2 cut(s) 36, 153
BsaI GGTCTC 1 cut(s) 97
BsaJI CCNNGG 4 cut(s) 56, 87, 211, 386
BsaWI WCCGGW 1 cut(s) 427
BsaXI ACNNNNNCTCC 2 cut(s) 485, 515
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse1I ACTGG 2 cut(s) 355, 514
BseAI TCCGGA 1 cut(s) 427
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 4 cut(s) 56, 87, 211, 386
BseGI GGATG 2 cut(s) 117, 553
BseLI CCNNNNNNNGG 1 cut(s) 311
BseNI ACTGG 2 cut(s) 355, 514
BseRI GAGGAG 2 cut(s) 113, 162
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 1 cut(s) 463
BsgI GTGCAG 1 cut(s) 350
Bsh1236I CGCG 1 cut(s) 89
BshFI GGCC 3 cut(s) 78, 234, 293
BsiHKAI GWGCWC 2 cut(s) 144, 485
BsiHKCI CYCGRG 1 cut(s) 386
BsiSI CCGG 4 cut(s) 236, 306, 387, 428
BslI CCNNNNNNNGG 1 cut(s) 311
BsmAI GTCTC 3 cut(s) 97, 405, 596
BsnI GGCC 3 cut(s) 78, 234, 293
Bso31I GGTCTC 1 cut(s) 97
BsoBI CYCGRG 1 cut(s) 386
Bsp119I TTCGAA 1 cut(s) 380
Bsp1286I GDGCHC 4 cut(s) 144, 218, 306, 485
Bsp13I TCCGGA 1 cut(s) 427
Bsp143I GATC 3 cut(s) 267, 526, 628
Bsp19I CCATGG 1 cut(s) 56
BspACI CCGC 6 cut(s) 87, 89, 127, 247, 315, 574
BspANI GGCC 3 cut(s) 78, 234, 293
BspEI TCCGGA 1 cut(s) 427
BspFNI CGCG 1 cut(s) 89
BspLI GGNNCC 1 cut(s) 499
BspPI GGATC 1 cut(s) 636
BspQI GCTCTTC 1 cut(s) 564
BspT104I TTCGAA 1 cut(s) 380
BspTNI GGTCTC 1 cut(s) 97
BsrBI CCGCTC 2 cut(s) 129, 574
BsrI ACTGG 2 cut(s) 355, 514
BssECI CCNNGG 4 cut(s) 56, 87, 211, 386
BssMI GATC 3 cut(s) 267, 526, 628
BssNI GRCGYC 2 cut(s) 36, 153
BssT1I CCWWGG 1 cut(s) 56
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 2 cut(s) 205, 497
Bst6I CTCTTC 2 cut(s) 258, 564
BstACI GRCGYC 2 cut(s) 36, 153
BstBI TTCGAA 1 cut(s) 380
BstC8I GCNNGC 2 cut(s) 218, 481
BstDEI CTNAG 1 cut(s) 705
BstDSI CCRYGG 2 cut(s) 56, 87
BstF5I GGATG 2 cut(s) 117, 553
BstFNI CGCG 1 cut(s) 89
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 4 cut(s) 44, 63, 332, 462
BstKTI GATC 3 cut(s) 270, 529, 631
BstMAI GTCTC 3 cut(s) 97, 405, 596
BstMBI GATC 3 cut(s) 267, 526, 628
BstMWI GCNNNNNNNGC 2 cut(s) 26, 476
BstNI CCWGG 1 cut(s) 212
BstSCI CCNGG 5 cut(s) 210, 234, 304, 385, 386
BstSLI GKGCMC 1 cut(s) 306
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 1 cut(s) 463
BstV2I GAAGAC 1 cut(s) 327
BstX2I RGATCY 1 cut(s) 526
BstYI RGATCY 1 cut(s) 526
BsuI GTATCC 2 cut(s) 435, 463
BsuRI GGCC 3 cut(s) 78, 234, 293
BtgI CCRYGG 2 cut(s) 56, 87
BtgZI GCGATG 3 cut(s) 324, 357, 661
BtrI CACGTC 1 cut(s) 370
BtsCI GGATG 2 cut(s) 117, 553
BtsIMutI CAGTG 1 cut(s) 666
Cac8I GCNNGC 2 cut(s) 218, 481
CfoI GCGC 4 cut(s) 44, 63, 332, 462
Cfr13I GGNCC 2 cut(s) 233, 512
Cfr42I CCGCGG 1 cut(s) 90
Cfr9I CCCGGG 1 cut(s) 386
CseI GACGC 2 cut(s) 25, 440
CviAII CATG 3 cut(s) 57, 457, 612
CviJI RGCY 9 cut(s) 14, 78, 216, 234, 293, 385, 470, 483, 616
CviKI_1 RGCY 9 cut(s) 14, 78, 216, 234, 293, 385, 470, 483, 616
DdeI CTNAG 1 cut(s) 705
DpnI GATC 3 cut(s) 269, 528, 630
DpnII GATC 3 cut(s) 267, 526, 628
EaeI YGGCCR 2 cut(s) 76, 291
Eam1104I CTCTTC 2 cut(s) 258, 564
EarI CTCTTC 2 cut(s) 258, 564
EciI GGCGGA 1 cut(s) 330
Ecl136II GAGCTC 1 cut(s) 483
Eco130I CCWWGG 1 cut(s) 56
Eco24I GRGCYC 2 cut(s) 218, 485
Eco31I GGTCTC 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 512
Eco53kI GAGCTC 1 cut(s) 483
Eco88I CYCGRG 1 cut(s) 386
EcoICRI GAGCTC 1 cut(s) 483
EcoRII CCWGG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 56
EcoT22I ATGCAT 1 cut(s) 553
EcoT38I GRGCYC 2 cut(s) 218, 485
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 3 cut(s) 60, 460, 615
FaiI YATR 9 cut(s) 17, 58, 275, 458, 507, 566, 613, 619, 644
FatI CATG 3 cut(s) 56, 456, 611
FauI CCCGC 1 cut(s) 567
FblI GTMKAC 1 cut(s) 372
Fnu4HI GCNGC 1 cut(s) 477
FokI GGATG 2 cut(s) 104, 560
FriOI GRGCYC 2 cut(s) 218, 485
Fsp4HI GCNGC 1 cut(s) 477
GlaI GCGC 4 cut(s) 43, 62, 331, 461
GluI GCNGC 1 cut(s) 477
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 3 cut(s) 78, 234, 293
HapII CCGG 4 cut(s) 236, 306, 387, 428
HgaI GACGC 2 cut(s) 25, 440
HhaI GCGC 4 cut(s) 44, 63, 332, 462
Hin1I GRCGYC 2 cut(s) 36, 153
Hin1II CATG 3 cut(s) 60, 460, 615
Hin6I GCGC 4 cut(s) 42, 61, 330, 460
HinP1I GCGC 4 cut(s) 42, 61, 330, 460
HincII GTYRAC 2 cut(s) 112, 373
HindII GTYRAC 2 cut(s) 112, 373
HinfI GANTC 3 cut(s) 398, 442, 701
HpaII CCGG 4 cut(s) 236, 306, 387, 428
HphI GGTGA 4 cut(s) 193, 262, 292, 596
Hpy166II GTNNAC 3 cut(s) 112, 201, 373
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 4 cut(s) 149, 157, 428, 530
Hpy8I GTNNAC 3 cut(s) 112, 201, 373
Hpy99I CGWCG 9 cut(s) 41, 155, 196, 209, 227, 263, 329, 374, 377
HpyAV CCTTC 1 cut(s) 388
HpyCH4III ACNGT 2 cut(s) 205, 497
HpyCH4IV ACGT 5 cut(s) 153, 369, 375, 621, 668
HpyCH4V TGCA 3 cut(s) 367, 406, 551
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 476
HpyF3I CTNAG 1 cut(s) 705
HpySE526I ACGT 5 cut(s) 153, 369, 375, 621, 668
Hsp92I GRCGYC 2 cut(s) 36, 153
Hsp92II CATG 3 cut(s) 60, 460, 615
HspAI GCGC 4 cut(s) 42, 61, 330, 460
Kpn2I TCCGGA 1 cut(s) 427
KspI CCGCGG 1 cut(s) 90
Kzo9I GATC 3 cut(s) 267, 526, 628
LguI GCTCTTC 1 cut(s) 564
LmnI GCTCC 1 cut(s) 134
Lsp1109I GCAGC 1 cut(s) 463
LweI GCATC 4 cut(s) 94, 273, 463, 538
MaeII ACGT 5 cut(s) 153, 369, 375, 621, 668
MaeIII GTNAC 1 cut(s) 154
MalI GATC 3 cut(s) 269, 528, 630
MbiI CCGCTC 2 cut(s) 129, 574
MboI GATC 3 cut(s) 267, 526, 628
MboII GAAGA 5 cut(s) 275, 332, 536, 581, 596
MflI RGATCY 1 cut(s) 526
MhlI GDGCHC 4 cut(s) 144, 218, 306, 485
MlsI TGGCCA 1 cut(s) 293
MluNI TGGCCA 1 cut(s) 293
MlyI GAGTC 1 cut(s) 407
Mox20I TGGCCA 1 cut(s) 293
Mph1103I ATGCAT 1 cut(s) 553
MroI TCCGGA 1 cut(s) 427
MscI TGGCCA 1 cut(s) 293
MseI TTAA 3 cut(s) 624, 675, 696
MslI CAYNNNNRTG 2 cut(s) 161, 278
Msp20I TGGCCA 1 cut(s) 293
MspA1I CMGCKG 1 cut(s) 89
MspI CCGG 4 cut(s) 236, 306, 387, 428
MspR9I CCNGG 5 cut(s) 212, 236, 306, 387, 388
MvaI CCWGG 1 cut(s) 212
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 2 cut(s) 26, 476
NciI CCSGG 4 cut(s) 236, 306, 387, 388
NcoI CCATGG 1 cut(s) 56
NdeII GATC 3 cut(s) 267, 526, 628
NlaIII CATG 3 cut(s) 60, 460, 615
NlaIV GGNNCC 1 cut(s) 499
NmuCI GTSAC 1 cut(s) 154
NsiI ATGCAT 1 cut(s) 553
NspV TTCGAA 1 cut(s) 380
PciSI GCTCTTC 1 cut(s) 564
PcsI WCGNNNNNNNCGW 1 cut(s) 333
PfeI GAWTC 2 cut(s) 442, 701
PkrI GCNGC 1 cut(s) 478
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
PshBI ATTAAT 1 cut(s) 675
Psp124BI GAGCTC 1 cut(s) 485
Psp1406I AACGTT 1 cut(s) 668
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 499
PspPI GGNCC 2 cut(s) 233, 512
PsuI RGATCY 1 cut(s) 526
RseI CAYNNNNRTG 2 cut(s) 161, 278
SacI GAGCTC 1 cut(s) 485
SacII CCGCGG 1 cut(s) 90
SalI GTCGAC 1 cut(s) 371
SapI GCTCTTC 1 cut(s) 564
SaqAI TTAA 3 cut(s) 624, 675, 696
SatI GCNGC 1 cut(s) 477
Sau3AI GATC 3 cut(s) 267, 526, 628
Sau96I GGNCC 2 cut(s) 233, 512
SchI GAGTC 1 cut(s) 407
ScrFI CCNGG 5 cut(s) 212, 236, 306, 387, 388
SduI GDGCHC 4 cut(s) 144, 218, 306, 485
SetI ASST 7 cut(s) 156, 372, 378, 472, 485, 624, 671
SfaNI GCATC 4 cut(s) 94, 273, 463, 538
Sfr303I CCGCGG 1 cut(s) 90
SfuI TTCGAA 1 cut(s) 380
SgrBI CCGCGG 1 cut(s) 90
SgrDI CGTCGACG 1 cut(s) 371
SinI GGWCC 1 cut(s) 512
SmaI CCCGGG 1 cut(s) 388
SmiMI CAYNNNNRTG 2 cut(s) 161, 278
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
SrfI GCCCGGGC 1 cut(s) 388
SsiI CCGC 6 cut(s) 87, 89, 127, 247, 315, 574
SspI AATATT 1 cut(s) 298
SstI GAGCTC 1 cut(s) 485
StyD4I CCNGG 5 cut(s) 210, 234, 304, 385, 386
StyI CCWWGG 1 cut(s) 56
TaaI ACNGT 2 cut(s) 205, 497
TaiI ACGT 5 cut(s) 156, 372, 378, 624, 671
TaqI TCGA 5 cut(s) 150, 222, 372, 380, 607
TfiI GAWTC 2 cut(s) 442, 701
Tru1I TTAA 3 cut(s) 624, 675, 696
Tru9I TTAA 3 cut(s) 624, 675, 696
TscAI CASTG 1 cut(s) 666
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 1 cut(s) 476
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 4 cut(s) 179, 549, 661, 693
TspGWI ACGGA 1 cut(s) 180
TspMI CCCGGG 1 cut(s) 386
TspRI CASTG 1 cut(s) 666
VpaK11BI GGWCC 1 cut(s) 512
VspI ATTAAT 1 cut(s) 675
XmaI CCCGGG 1 cut(s) 386
XmiI GTMKAC 1 cut(s) 372
ZraI GACGTC 1 cut(s) 154
Zsp2I ATGCAT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.