Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012515

Physical Location & Seq

Genomic Coordinates Forward (+)

16438184 .. 16438504

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0099100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCCTCTTCACCCGACCCTCAAACCTACCTTTGCTTCAATGATTTCTTCAGCTGTCCCACTGGGTTTTGCAATTGACGAACTACCTGTGCCTTCTGTGGAAGACGGGGTTGTCACGGTCCGGATCTCTGATGACCCTTTCCAACGTGGTCTTGATAGTTTCAAGACACTTCTTGTTGGGAAACTCCATTCACCCCCGAAGGGTATCATGCCAAAGGCTCATGAACTAGCACAGAGGCTGCGCTTGTACTGGCATAATGTCCAAAATTGGTCTATTGCTCCATTAGGTAAGGGGTTTTCATGCTACAGTTTCAAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

MAM33

Protein Analysis

106

Amino Acids

11.73

Weight (kDa)

9.25

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32605
fragaria_vesca	FvH4_7g05420 FvH4_7g05420 FvH4_7g05470 FvH4_7g05470
malus_domestica	MD02G1258000.v1.1
prunus_persica	Prupe.2G074600_v2.0.a1
pyrus_communis	pycom02g21920 pycom07g04810
rosa_chinensis	RchiOBHm_Chr1g0332231
rosa_laevigata	RLG00000029684
rosa_multiflora	Rmu_sc0000733.1_g000003
rosa_roxburghii	Rroxscaffold_4G00318340
rosa_rugosa	Rorug01G0099100
rosa_samantha	Rh1AG122900 Rh1BG094000 Rh1CG117500 Rh1DG128300
rosa_wichuraiana	Rw1G010020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	110
AccIII	TCCGGA	1 cut(s)	120
AclWI	GGATC	1 cut(s)	131
AcuI	CTGAAG	1 cut(s)	33
AfaI	GTAC	1 cut(s)	248
AfiI	CCNNNNNNNGG	1 cut(s)	200
AgsI	TTSAA	3 cut(s)	39, 163, 313
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
AlwI	GGATC	1 cut(s)	131
AlwNI	CAGNNNCTG	1 cut(s)	238
Aor13HI	TCCGGA	1 cut(s)	120
ApeKI	GCWGC	1 cut(s)	238
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	1 cut(s)	183
AvaII	GGWCC	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	225
BfaI	CTAG	2 cut(s)	227, 319
BfmI	CTRYAG	1 cut(s)	304
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmrI	ACTGGG	1 cut(s)	71
BmuI	ACTGGG	1 cut(s)	71
BpiI	GAAGAC	1 cut(s)	108
BsaWI	WCCGGW	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	200
Bse1I	ACTGG	2 cut(s)	66, 254
BseAI	TCCGGA	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	200
BseNI	ACTGG	2 cut(s)	66, 254
BseXI	GCAGC	1 cut(s)	225
BsiSI	CCGG	1 cut(s)	121
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	41
Bsp13I	TCCGGA	1 cut(s)	120
Bsp143I	GATC	1 cut(s)	123
BspEI	TCCGGA	1 cut(s)	120
BspHI	TCATGA	1 cut(s)	220
BspPI	GGATC	1 cut(s)	131
BsrI	ACTGG	2 cut(s)	66, 254
BssMI	GATC	1 cut(s)	123
Bst4CI	ACNGT	2 cut(s)	118, 308
Bst6I	CTCTTC	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	123
BstSFI	CTRYAG	1 cut(s)	304
BstV1I	GCAGC	1 cut(s)	225
BstV2I	GAAGAC	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	59
CaiI	CAGNNNCTG	1 cut(s)	238
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	118
CpoI	CGGWCCG	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	247
CspI	CGGWCCG	1 cut(s)	118
CviAII	CATG	3 cut(s)	208, 221, 300
CviJI	RGCY	3 cut(s)	53, 218, 238
CviKI_1	RGCY	3 cut(s)	53, 218, 238
CviQI	GTAC	1 cut(s)	247
DpnI	GATC	1 cut(s)	125
DpnII	GATC	1 cut(s)	123
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	33
FaeI	CATG	3 cut(s)	211, 224, 303
FaiI	YATR	4 cut(s)	209, 222, 255, 301
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	3 cut(s)	207, 220, 299
Fnu4HI	GCNGC	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	239
FspBI	CTAG	2 cut(s)	227, 319
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	1 cut(s)	239
HapII	CCGG	1 cut(s)	121
HhaI	GCGC	1 cut(s)	243
Hin1II	CATG	3 cut(s)	211, 224, 303
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	1 cut(s)	183
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	4 cut(s)	121, 152, 163, 221
HpyAV	CCTTC	2 cut(s)	102, 193
HpyCH4III	ACNGT	2 cut(s)	118, 308
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	1 cut(s)	71
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	3 cut(s)	211, 224, 303
HspAI	GCGC	1 cut(s)	241
Kpn2I	TCCGGA	1 cut(s)	120
Kzo9I	GATC	1 cut(s)	123
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	4 cut(s)	47, 99, 134, 235
Lsp1109I	GCAGC	1 cut(s)	225
MaeI	CTAG	2 cut(s)	227, 319
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	1 cut(s)	125
MboI	GATC	1 cut(s)	123
MboII	GAAGA	2 cut(s)	39, 113
MfeI	CAATTG	1 cut(s)	72
MflI	RGATCY	1 cut(s)	123
MluCI	AATT	2 cut(s)	72, 265
MmeI	TCCRAC	1 cut(s)	166
MnlI	CCTC	3 cut(s)	15, 29, 228
MroI	TCCGGA	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	53
MspI	CCGG	1 cut(s)	121
MunI	CAATTG	1 cut(s)	72
NdeII	GATC	1 cut(s)	123
NlaIII	CATG	3 cut(s)	211, 224, 303
NmuCI	GTSAC	1 cut(s)	112
PagI	TCATGA	1 cut(s)	220
PkrI	GCNGC	1 cut(s)	240
PspPI	GGNCC	1 cut(s)	118
PstNI	CAGNNNCTG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	123
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
Rsr2I	CGGWCCG	1 cut(s)	118
RsrII	CGGWCCG	1 cut(s)	118
SatI	GCNGC	1 cut(s)	239
Sau3AI	GATC	1 cut(s)	123
Sau96I	GGNCC	1 cut(s)	118
SetI	ASST	6 cut(s)	28, 32, 55, 88, 148, 289
SfcI	CTRYAG	1 cut(s)	304
SinI	GGWCC	1 cut(s)	118
Sse9I	AATT	2 cut(s)	72, 265
SspMI	CTAG	2 cut(s)	227, 319
TaaI	ACNGT	2 cut(s)	118, 308
TaiI	ACGT	1 cut(s)	148
TasI	AATT	2 cut(s)	72, 265
TatI	WGTACW	1 cut(s)	246
TscAI	CASTG	1 cut(s)	66
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	1 cut(s)	238
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	2 cut(s)	237, 288
TspRI	CASTG	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	118
XspI	CTAG	2 cut(s)	227, 319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.