Rh1CG117500

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0012515
Physical Location & Seq
Reverse (-)
25475560 .. 25478143
2584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG117500.1

Sequence Viewer

Length: 591 bp
ATGAGATCAATATCAATGTGGAGGAAAGCCACAGCATTCTCAGGGTTTGGTGCCACACTGAGCCACCACCTATGCCGGCGCCACTCCACCGCCACCGCCACCGCCACGGCTGTGAACTCGATGCTCCTCCGCTCCCTGAAAGAGCACTATCTGGAAGTGTCCAAAATGACCCCTCCTCCTAAAGTCAACCCTCCCTCGCCTTTCACCGTCGTCAAGGGCGCGCTCGACGGCGCCGGTCCCGTGCTCAAGCGCAGCTACGGCGACGAACAAATCAGCATATCGGTCATGCGAATGGATAATATTATTCCCGGCGCAGGTGCCGCCGCCGGAGGCGAAGACGACGACGACGACGCCATCAACCAGTTGTTCCTACACGTCGAGGTTTCGAAGCCGGGACAGAAGGAGTCTCTGCTTTTTCTTTGTGGGCTGTATCCGGACGCCTTAGGCATTCACTCTGTCTCTATCAGGCCTATGGCCGACGCCTCTGATTACGCTGCGCCTCGTTCTTCAGCATATACTGGCCCTCTTTTTGAGTATGTCCTCCTCCTCCTCCTCTATCTTCTCATTCTTTTCACTTCACTCTTTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

196

Amino Acids

21.19

Weight (kDa)

6.58

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 81 - 178 9.5e-07 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32605
fragaria_vesca FvH4_7g05420 FvH4_7g05420 FvH4_7g05470 FvH4_7g05470
malus_domestica MD02G1258000.v1.1
prunus_persica Prupe.2G074600_v2.0.a1
pyrus_communis pycom02g21920 pycom07g04810
rosa_chinensis RchiOBHm_Chr1g0332231
rosa_laevigata RLG00000029684
rosa_multiflora Rmu_sc0000733.1_g000003
rosa_roxburghii Rroxscaffold_4G00318340
rosa_rugosa Rorug01G0099100
rosa_samantha Rh1AG122900 Rh1BG094000 Rh1CG117500 Rh1DG128300
rosa_wichuraiana Rw1G010020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 305
Acc36I ACCTGC 1 cut(s) 305
AccB1I GGYRCC 4 cut(s) 50, 78, 230, 317
AccBSI CCGCTC 1 cut(s) 132
AccII CGCG 1 cut(s) 221
AccIII TCCGGA 1 cut(s) 433
AciI CCGC 6 cut(s) 90, 96, 102, 130, 321, 324
AcoI YGGCCR 1 cut(s) 474
AcuI CTGAAG 1 cut(s) 492
AcyI GRCGYC 5 cut(s) 79, 231, 351, 438, 480
AfiI CCNNNNNNNGG 1 cut(s) 314
AflIII ACRYGT 1 cut(s) 373
AjiI CACGTC 1 cut(s) 376
AleI CACNNNNGTG 1 cut(s) 110
AluBI AGCT 1 cut(s) 255
AluI AGCT 1 cut(s) 255
Alw21I GWGCWC 2 cut(s) 147, 246
Alw26I GTCTC 2 cut(s) 411, 463
Aor13HI TCCGGA 1 cut(s) 433
AoxI GGCC 3 cut(s) 467, 474, 520
ApeKI GCWGC 2 cut(s) 252, 494
AspLEI GCGC 7 cut(s) 81, 221, 223, 233, 252, 314, 499
AspS9I GGNCC 2 cut(s) 236, 521
AsuC2I CCSGG 2 cut(s) 309, 393
AsuHPI GGTGA 1 cut(s) 196
AsuII TTCGAA 1 cut(s) 386
AvaII GGWCC 1 cut(s) 236
AxyI CCTNAGG 1 cut(s) 442
BanI GGYRCC 4 cut(s) 50, 78, 230, 317
BbsI GAAGAC 1 cut(s) 342
Bbv12I GWGCWC 2 cut(s) 147, 246
BbvI GCAGC 2 cut(s) 264, 481
BccI CCATC 1 cut(s) 362
BceAI ACGGC 3 cut(s) 123, 244, 274
BciVI GTATCC 1 cut(s) 441
BcnI CCSGG 2 cut(s) 309, 393
BcoDI GTCTC 2 cut(s) 411, 463
BfoI RGCGCY 2 cut(s) 82, 234
BfuAI ACCTGC 1 cut(s) 305
BfuI GTATCC 1 cut(s) 441
BisI GCNGC 4 cut(s) 253, 321, 324, 495
BlsI GCNGC 4 cut(s) 254, 322, 325, 496
Bme1390I CCNGG 2 cut(s) 309, 393
Bme18I GGWCC 1 cut(s) 236
BmgBI CACGTC 1 cut(s) 376
BmgT120I GGNCC 2 cut(s) 236, 521
BmiI GGNNCC 5 cut(s) 52, 80, 232, 238, 319
BmrFI CCNGG 2 cut(s) 309, 393
BmsI GCATC 1 cut(s) 111
BpiI GAAGAC 1 cut(s) 342
Bpu14I TTCGAA 1 cut(s) 386
BpuEI CTTGAG 1 cut(s) 230
BpuMI CCSGG 2 cut(s) 309, 393
BsaBI GATNNNNATC 1 cut(s) 10
BsaHI GRCGYC 5 cut(s) 79, 231, 351, 438, 480
BsaJI CCNNGG 1 cut(s) 105
BsaWI WCCGGW 1 cut(s) 433
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse118I RCCGGY 2 cut(s) 75, 233
Bse1I ACTGG 2 cut(s) 361, 523
Bse21I CCTNAGG 1 cut(s) 442
Bse8I GATNNNNATC 1 cut(s) 10
BseAI TCCGGA 1 cut(s) 433
BseDI CCNNGG 1 cut(s) 105
BseJI GATNNNNATC 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMII CTCAG 2 cut(s) 50, 54
BseNI ACTGG 2 cut(s) 361, 523
BsePI GCGCGC 1 cut(s) 219
BseRI GAGGAG 6 cut(s) 116, 165, 533, 536, 539, 542
BseXI GCAGC 2 cut(s) 264, 481
Bsh1236I CGCG 1 cut(s) 221
BshFI GGCC 3 cut(s) 469, 476, 522
BshNI GGYRCC 4 cut(s) 50, 78, 230, 317
BsiHKAI GWGCWC 2 cut(s) 147, 246
BsiSI CCGG 6 cut(s) 76, 234, 309, 327, 392, 434
BslFI GGGAC 2 cut(s) 222, 408
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 2 cut(s) 411, 463
BsmFI GGGAC 2 cut(s) 222, 408
BsmI GAATGC 2 cut(s) 35, 447
BsnI GGCC 3 cut(s) 469, 476, 522
Bsp119I TTCGAA 1 cut(s) 386
Bsp1286I GDGCHC 2 cut(s) 147, 246
Bsp13I TCCGGA 1 cut(s) 433
Bsp143I GATC 1 cut(s) 5
BspACI CCGC 6 cut(s) 90, 96, 102, 130, 321, 324
BspANI GGCC 3 cut(s) 469, 476, 522
BspCNI CTCAG 2 cut(s) 51, 53
BspEI TCCGGA 1 cut(s) 433
BspFNI CGCG 1 cut(s) 221
BspLI GGNNCC 5 cut(s) 52, 80, 232, 238, 319
BspMI ACCTGC 1 cut(s) 305
BspT104I TTCGAA 1 cut(s) 386
BspT107I GGYRCC 4 cut(s) 50, 78, 230, 317
BsrBI CCGCTC 1 cut(s) 132
BsrFI RCCGGY 2 cut(s) 75, 233
BsrI ACTGG 2 cut(s) 361, 523
BssAI RCCGGY 2 cut(s) 75, 233
BssECI CCNNGG 1 cut(s) 105
BssHII GCGCGC 1 cut(s) 219
BssMI GATC 1 cut(s) 5
BssNI GRCGYC 5 cut(s) 79, 231, 351, 438, 480
Bst4CI ACNGT 1 cut(s) 208
BstACI GRCGYC 5 cut(s) 79, 231, 351, 438, 480
BstBI TTCGAA 1 cut(s) 386
BstC8I GCNNGC 2 cut(s) 77, 221
BstDEI CTNAG 3 cut(s) 40, 59, 442
BstDSI CCRYGG 1 cut(s) 105
BstFNI CGCG 1 cut(s) 221
BstH2I RGCGCY 2 cut(s) 82, 234
BstHHI GCGC 7 cut(s) 81, 221, 223, 233, 252, 314, 499
BstKTI GATC 1 cut(s) 8
BstMAI GTCTC 2 cut(s) 411, 463
BstMBI GATC 1 cut(s) 5
BstMWI GCNNNNNNNGC 2 cut(s) 258, 320
BstSCI CCNGG 2 cut(s) 307, 391
BstUI CGCG 1 cut(s) 221
BstV1I GCAGC 2 cut(s) 264, 481
BstV2I GAAGAC 1 cut(s) 342
Bsu36I CCTNAGG 1 cut(s) 442
BsuI GTATCC 1 cut(s) 441
BsuRI GGCC 3 cut(s) 469, 476, 522
BtgI CCRYGG 1 cut(s) 105
BtrI CACGTC 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 56
BveI ACCTGC 1 cut(s) 305
Cac8I GCNNGC 2 cut(s) 77, 221
CfoI GCGC 7 cut(s) 81, 221, 223, 233, 252, 314, 499
Cfr10I RCCGGY 2 cut(s) 75, 233
Cfr13I GGNCC 2 cut(s) 236, 521
CseI GACGC 3 cut(s) 359, 446, 488
CviAII CATG 1 cut(s) 286
CviJI RGCY 9 cut(s) 29, 63, 110, 255, 391, 427, 469, 476, 522
CviKI_1 RGCY 9 cut(s) 29, 63, 110, 255, 391, 427, 469, 476, 522
DdeI CTNAG 3 cut(s) 40, 59, 442
DinI GGCGCC 2 cut(s) 80, 232
DpnI GATC 1 cut(s) 7
DpnII GATC 1 cut(s) 5
EaeI YGGCCR 1 cut(s) 474
Eco147I AGGCCT 1 cut(s) 469
Eco47I GGWCC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 492
Eco81I CCTNAGG 1 cut(s) 442
EgeI GGCGCC 2 cut(s) 80, 232
EheI GGCGCC 2 cut(s) 80, 232
FaeI CATG 1 cut(s) 289
FaiI YATR 7 cut(s) 73, 278, 287, 473, 514, 516, 537
FaqI GGGAC 2 cut(s) 222, 408
FatI CATG 1 cut(s) 285
Fnu4HI GCNGC 4 cut(s) 253, 321, 324, 495
Fsp4HI GCNGC 4 cut(s) 253, 321, 324, 495
GlaI GCGC 7 cut(s) 80, 220, 222, 232, 251, 313, 498
GluI GCNGC 4 cut(s) 253, 321, 324, 495
HaeII RGCGCY 2 cut(s) 82, 234
HaeIII GGCC 3 cut(s) 469, 476, 522
HapII CCGG 6 cut(s) 76, 234, 309, 327, 392, 434
HgaI GACGC 3 cut(s) 359, 446, 488
HhaI GCGC 7 cut(s) 81, 221, 223, 233, 252, 314, 499
Hin1I GRCGYC 5 cut(s) 79, 231, 351, 438, 480
Hin1II CATG 1 cut(s) 289
Hin6I GCGC 7 cut(s) 79, 219, 221, 231, 250, 312, 497
HinP1I GCGC 7 cut(s) 79, 219, 221, 231, 250, 312, 497
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 1 cut(s) 404
HpaII CCGG 6 cut(s) 76, 234, 309, 327, 392, 434
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 2 cut(s) 115, 187
Hpy188I TCNGA 1 cut(s) 487
Hpy188III TCNNGA 2 cut(s) 152, 434
Hpy8I GTNNAC 2 cut(s) 115, 187
Hpy99I CGWCG 9 cut(s) 212, 230, 266, 344, 347, 350, 353, 380, 482
HpyAV CCTTC 1 cut(s) 394
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 1 cut(s) 375
HpyF10VI GCNNNNNNNGC 2 cut(s) 258, 320
HpyF3I CTNAG 3 cut(s) 40, 59, 442
HpySE526I ACGT 1 cut(s) 375
Hsp92I GRCGYC 5 cut(s) 79, 231, 351, 438, 480
Hsp92II CATG 1 cut(s) 289
HspAI GCGC 7 cut(s) 79, 219, 221, 231, 250, 312, 497
KasI GGCGCC 2 cut(s) 78, 230
Kpn2I TCCGGA 1 cut(s) 433
KroI GCCGGC 1 cut(s) 75
KroNI GCCGGC 1 cut(s) 77
Kzo9I GATC 1 cut(s) 5
LmnI GCTCC 2 cut(s) 129, 137
Lsp1109I GCAGC 2 cut(s) 264, 481
LweI GCATC 1 cut(s) 111
MaeII ACGT 1 cut(s) 375
MalI GATC 1 cut(s) 7
MbiI CCGCTC 1 cut(s) 132
MboI GATC 1 cut(s) 5
MboII GAAGA 3 cut(s) 347, 498, 551
MhlI GDGCHC 2 cut(s) 147, 246
Mly113I GGCGCC 2 cut(s) 79, 231
MlyI GAGTC 1 cut(s) 413
MroI TCCGGA 1 cut(s) 433
MroNI GCCGGC 1 cut(s) 75
MslI CAYNNNNRTG 2 cut(s) 110, 290
MspI CCGG 6 cut(s) 76, 234, 309, 327, 392, 434
MspR9I CCNGG 2 cut(s) 309, 393
Mva1269I GAATGC 2 cut(s) 35, 447
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 2 cut(s) 258, 320
NaeI GCCGGC 1 cut(s) 77
NarI GGCGCC 2 cut(s) 79, 231
NciI CCSGG 2 cut(s) 309, 393
NdeII GATC 1 cut(s) 5
NgoMIV GCCGGC 1 cut(s) 75
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 5 cut(s) 52, 80, 232, 238, 319
NspV TTCGAA 1 cut(s) 386
OliI CACNNNNGTG 1 cut(s) 110
PaqCI CACCTGC 1 cut(s) 305
PauI GCGCGC 1 cut(s) 219
PceI AGGCCT 1 cut(s) 469
PcsI WCGNNNNNNNCGW 1 cut(s) 345
PctI GAATGC 2 cut(s) 35, 447
PdiI GCCGGC 1 cut(s) 77
PkrI GCNGC 4 cut(s) 254, 322, 325, 496
PleI GAGTC 1 cut(s) 412
PluTI GGCGCC 2 cut(s) 82, 234
PpsI GAGTC 1 cut(s) 412
PspN4I GGNNCC 5 cut(s) 52, 80, 232, 238, 319
PspPI GGNCC 2 cut(s) 236, 521
PteI GCGCGC 1 cut(s) 219
RseI CAYNNNNRTG 2 cut(s) 110, 290
SatI GCNGC 4 cut(s) 253, 321, 324, 495
Sau3AI GATC 1 cut(s) 5
Sau96I GGNCC 2 cut(s) 236, 521
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 2 cut(s) 309, 393
SduI GDGCHC 2 cut(s) 147, 246
SetI ASST 5 cut(s) 72, 257, 319, 378, 384
SfaNI GCATC 1 cut(s) 111
SfoI GGCGCC 2 cut(s) 80, 232
SfuI TTCGAA 1 cut(s) 386
SinI GGWCC 1 cut(s) 236
SmiMI CAYNNNNRTG 2 cut(s) 110, 290
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
SseBI AGGCCT 1 cut(s) 469
SsiI CCGC 6 cut(s) 90, 96, 102, 130, 321, 324
SspDI GGCGCC 2 cut(s) 78, 230
SspI AATATT 1 cut(s) 301
StuI AGGCCT 1 cut(s) 469
StyD4I CCNGG 2 cut(s) 307, 391
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 1 cut(s) 378
TaqI TCGA 4 cut(s) 119, 225, 378, 386
TaqII GACCGA 1 cut(s) 271
TauI GCSGC 2 cut(s) 323, 326
TscAI CASTG 1 cut(s) 63
TseI GCWGC 2 cut(s) 252, 494
TspRI CASTG 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.