RLG00000029684

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0012515
Physical Location & Seq
Forward (+)
42992100 .. 42994488
2389 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029684

Sequence Viewer

Length: 696 bp
ATGTGGAGGAAAGCCACAGCATTCTCAGGGTTTGCTGCCACACTGAGCCACCACCTATGCCGGCGCCACTCCACCGCCACCGCCACCGCCACGGCTGTGAACTCGATGCTCCTCCGCTCCCTGAAAGAGCACTATCTGGAAGTGTCCAAAATGACCCCTCCCCCTAAAGTCAACCCTCCCTCGCCTTTCACAGTCGTCAAGGGCTCGCTCGACGGCGCCGGTCCCGTCCTCAAGCGCAGCTATGGCGACGAACAAATCAGCATATCGGTCATGCGAATGGATAATATTATTCCCGGCGGAGGTGCCGCCGCCGGAGGAGAAGACGACGACGACGCCGACGCCGACATCAACCAGCTGTTCCTACACGTCGAGGTTTCGAAGCCGGGACAGAAGGAGTCTCTGCTTTTTCTTTGTGGGCTGTATCCGGACGCCTTAGGCATTCACTCTGTCTCTATCAGGCCTATGGCCGACGCCTCTGATTACGCTGCGCCTCGTTCTTCAGCATATACTGGCCCTCTTTTTGAAGATCTTGATGAAGGGATGAGGGATGCATTCCACAGCTACATAGAAGAGCGGGGTGTGGGTGATAGTCTTTTTCCATTTCTTCGAGCATGGCTATACGTCAAAGACCATCGTAATCTTATGCGCTGGTTTAAAACAGTAGGATCATTTGTTAATGAAACCAAGTCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

232

Amino Acids

25.32

Weight (kDa)

6.05

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 76 - 225 4.8e-24 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32605
fragaria_vesca FvH4_7g05420 FvH4_7g05420 FvH4_7g05470 FvH4_7g05470
malus_domestica MD02G1258000.v1.1
prunus_persica Prupe.2G074600_v2.0.a1
pyrus_communis pycom02g21920 pycom07g04810
rosa_chinensis RchiOBHm_Chr1g0332231
rosa_laevigata RLG00000029684
rosa_multiflora Rmu_sc0000733.1_g000003
rosa_roxburghii Rroxscaffold_4G00318340
rosa_rugosa Rorug01G0099100
rosa_samantha Rh1AG122900 Rh1BG094000 Rh1CG117500 Rh1DG128300
rosa_wichuraiana Rw1G010020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 63, 215, 302
AccBSI CCGCTC 2 cut(s) 117, 574
AccIII TCCGGA 1 cut(s) 424
AciI CCGC 8 cut(s) 75, 81, 87, 115, 297, 306, 309, 574
AclWI GGATC 1 cut(s) 673
AcoI YGGCCR 1 cut(s) 465
AcuI CTGAAG 1 cut(s) 483
AcyI GRCGYC 6 cut(s) 64, 216, 333, 339, 429, 471
AfiI CCNNNNNNNGG 1 cut(s) 299
AflIII ACRYGT 1 cut(s) 364
AgsI TTSAA 1 cut(s) 524
AjiI CACGTC 1 cut(s) 367
AleI CACNNNNGTG 1 cut(s) 95
AluBI AGCT 3 cut(s) 240, 355, 561
AluI AGCT 3 cut(s) 240, 355, 561
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 2 cut(s) 402, 454
AlwI GGATC 1 cut(s) 673
Aor13HI TCCGGA 1 cut(s) 424
AoxI GGCC 3 cut(s) 458, 465, 511
ApeKI GCWGC 3 cut(s) 35, 237, 485
AspLEI GCGC 5 cut(s) 66, 218, 237, 490, 648
AspS9I GGNCC 2 cut(s) 221, 512
AsuC2I CCSGG 2 cut(s) 294, 384
AsuHPI GGTGA 1 cut(s) 596
AsuII TTCGAA 1 cut(s) 377
AvaII GGWCC 1 cut(s) 221
AxyI CCTNAGG 1 cut(s) 433
BanI GGYRCC 3 cut(s) 63, 215, 302
BanII GRGCYC 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 327
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 3 cut(s) 22, 249, 472
BccI CCATC 1 cut(s) 639
BceAI ACGGC 2 cut(s) 108, 229
BciVI GTATCC 1 cut(s) 432
BcnI CCSGG 2 cut(s) 294, 384
BcoDI GTCTC 2 cut(s) 402, 454
BfoI RGCGCY 2 cut(s) 67, 219
BfuI GTATCC 1 cut(s) 432
BglII AGATCT 1 cut(s) 526
BisI GCNGC 5 cut(s) 36, 238, 306, 309, 486
BlsI GCNGC 5 cut(s) 37, 239, 307, 310, 487
Bme1390I CCNGG 2 cut(s) 294, 384
Bme18I GGWCC 1 cut(s) 221
BmgBI CACGTC 1 cut(s) 367
BmgT120I GGNCC 2 cut(s) 221, 512
BmiI GGNNCC 4 cut(s) 65, 217, 223, 304
BmrFI CCNGG 2 cut(s) 294, 384
BmsI GCATC 2 cut(s) 96, 538
BpiI GAAGAC 1 cut(s) 327
Bpu14I TTCGAA 1 cut(s) 377
BpuEI CTTGAG 1 cut(s) 215
BpuMI CCSGG 2 cut(s) 294, 384
BsaHI GRCGYC 6 cut(s) 64, 216, 333, 339, 429, 471
BsaJI CCNNGG 1 cut(s) 90
BsaWI WCCGGW 1 cut(s) 424
Bsc4I CCNNNNNNNGG 1 cut(s) 299
Bse118I RCCGGY 2 cut(s) 60, 218
Bse1I ACTGG 1 cut(s) 514
Bse21I CCTNAGG 1 cut(s) 433
BseAI TCCGGA 1 cut(s) 424
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 2 cut(s) 546, 553
BseLI CCNNNNNNNGG 1 cut(s) 299
BseMII CTCAG 2 cut(s) 35, 39
BseNI ACTGG 1 cut(s) 514
BseRI GAGGAG 2 cut(s) 101, 330
BseXI GCAGC 3 cut(s) 22, 249, 472
BshFI GGCC 3 cut(s) 460, 467, 513
BshNI GGYRCC 3 cut(s) 63, 215, 302
BsiHKAI GWGCWC 1 cut(s) 132
BsiSI CCGG 6 cut(s) 61, 219, 294, 312, 383, 425
BslFI GGGAC 2 cut(s) 207, 399
BslI CCNNNNNNNGG 1 cut(s) 299
BsmAI GTCTC 2 cut(s) 402, 454
BsmFI GGGAC 2 cut(s) 207, 399
BsmI GAATGC 3 cut(s) 20, 438, 551
BsnI GGCC 3 cut(s) 460, 467, 513
Bsp119I TTCGAA 1 cut(s) 377
Bsp1286I GDGCHC 2 cut(s) 132, 206
Bsp13I TCCGGA 1 cut(s) 424
Bsp143I GATC 2 cut(s) 526, 665
BspACI CCGC 8 cut(s) 75, 81, 87, 115, 297, 306, 309, 574
BspANI GGCC 3 cut(s) 460, 467, 513
BspCNI CTCAG 2 cut(s) 36, 38
BspEI TCCGGA 1 cut(s) 424
BspLI GGNNCC 4 cut(s) 65, 217, 223, 304
BspPI GGATC 1 cut(s) 673
BspQI GCTCTTC 1 cut(s) 564
BspT104I TTCGAA 1 cut(s) 377
BspT107I GGYRCC 3 cut(s) 63, 215, 302
BsrBI CCGCTC 2 cut(s) 117, 574
BsrFI RCCGGY 2 cut(s) 60, 218
BsrI ACTGG 1 cut(s) 514
BssAI RCCGGY 2 cut(s) 60, 218
BssECI CCNNGG 1 cut(s) 90
BssMI GATC 2 cut(s) 526, 665
BssNI GRCGYC 6 cut(s) 64, 216, 333, 339, 429, 471
Bst4CI ACNGT 2 cut(s) 193, 661
Bst6I CTCTTC 1 cut(s) 564
BstACI GRCGYC 6 cut(s) 64, 216, 333, 339, 429, 471
BstBI TTCGAA 1 cut(s) 377
BstC8I GCNNGC 2 cut(s) 62, 206
BstDEI CTNAG 3 cut(s) 25, 44, 433
BstDSI CCRYGG 1 cut(s) 90
BstF5I GGATG 2 cut(s) 546, 553
BstH2I RGCGCY 2 cut(s) 67, 219
BstHHI GCGC 5 cut(s) 66, 218, 237, 490, 648
BstKTI GATC 2 cut(s) 529, 668
BstMAI GTCTC 2 cut(s) 402, 454
BstMBI GATC 2 cut(s) 526, 665
BstMWI GCNNNNNNNGC 1 cut(s) 243
BstSCI CCNGG 2 cut(s) 292, 382
BstV1I GCAGC 3 cut(s) 22, 249, 472
BstV2I GAAGAC 1 cut(s) 327
BstX2I RGATCY 1 cut(s) 526
BstYI RGATCY 1 cut(s) 526
Bsu36I CCTNAGG 1 cut(s) 433
BsuI GTATCC 1 cut(s) 432
BsuRI GGCC 3 cut(s) 460, 467, 513
BtgI CCRYGG 1 cut(s) 90
BtrI CACGTC 1 cut(s) 367
BtsCI GGATG 2 cut(s) 546, 553
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 2 cut(s) 62, 206
CfoI GCGC 5 cut(s) 66, 218, 237, 490, 648
Cfr10I RCCGGY 2 cut(s) 60, 218
Cfr13I GGNCC 2 cut(s) 221, 512
CseI GACGC 4 cut(s) 341, 347, 437, 479
CviAII CATG 2 cut(s) 271, 612
DdeI CTNAG 3 cut(s) 25, 44, 433
DinI GGCGCC 2 cut(s) 65, 217
DpnI GATC 2 cut(s) 528, 667
DpnII GATC 2 cut(s) 526, 665
DraI TTTAAA 1 cut(s) 655
EaeI YGGCCR 1 cut(s) 465
Eam1104I CTCTTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 564
EciI GGCGGA 1 cut(s) 312
Eco147I AGGCCT 1 cut(s) 460
Eco24I GRGCYC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 221
Eco57I CTGAAG 1 cut(s) 483
Eco81I CCTNAGG 1 cut(s) 433
EcoT22I ATGCAT 1 cut(s) 553
EcoT38I GRGCYC 1 cut(s) 206
EgeI GGCGCC 2 cut(s) 65, 217
EheI GGCGCC 2 cut(s) 65, 217
FaeI CATG 2 cut(s) 274, 615
FaqI GGGAC 2 cut(s) 207, 399
FatI CATG 2 cut(s) 270, 611
FauI CCCGC 1 cut(s) 567
Fnu4HI GCNGC 5 cut(s) 36, 238, 306, 309, 486
FokI GGATG 2 cut(s) 553, 560
FriOI GRGCYC 1 cut(s) 206
Fsp4HI GCNGC 5 cut(s) 36, 238, 306, 309, 486
GlaI GCGC 5 cut(s) 65, 217, 236, 489, 647
GluI GCNGC 5 cut(s) 36, 238, 306, 309, 486
HaeII RGCGCY 2 cut(s) 67, 219
HaeIII GGCC 3 cut(s) 460, 467, 513
HapII CCGG 6 cut(s) 61, 219, 294, 312, 383, 425
HgaI GACGC 4 cut(s) 341, 347, 437, 479
HhaI GCGC 5 cut(s) 66, 218, 237, 490, 648
Hin1I GRCGYC 6 cut(s) 64, 216, 333, 339, 429, 471
Hin1II CATG 2 cut(s) 274, 615
Hin6I GCGC 5 cut(s) 64, 216, 235, 488, 646
HinP1I GCGC 5 cut(s) 64, 216, 235, 488, 646
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 1 cut(s) 395
HpaII CCGG 6 cut(s) 61, 219, 294, 312, 383, 425
HphI GGTGA 1 cut(s) 596
Hpy166II GTNNAC 2 cut(s) 100, 172
Hpy188I TCNGA 1 cut(s) 478
Hpy188III TCNNGA 3 cut(s) 137, 425, 530
Hpy8I GTNNAC 2 cut(s) 100, 172
Hpy99I CGWCG 8 cut(s) 215, 251, 329, 332, 335, 341, 371, 473
HpyAV CCTTC 2 cut(s) 385, 530
HpyCH4III ACNGT 2 cut(s) 193, 661
HpyCH4IV ACGT 2 cut(s) 366, 621
HpyCH4V TGCA 1 cut(s) 551
HpyF10VI GCNNNNNNNGC 1 cut(s) 243
HpyF3I CTNAG 3 cut(s) 25, 44, 433
HpySE526I ACGT 2 cut(s) 366, 621
Hsp92I GRCGYC 6 cut(s) 64, 216, 333, 339, 429, 471
Hsp92II CATG 2 cut(s) 274, 615
HspAI GCGC 5 cut(s) 64, 216, 235, 488, 646
KasI GGCGCC 2 cut(s) 63, 215
Kpn2I TCCGGA 1 cut(s) 424
KroI GCCGGC 1 cut(s) 60
KroNI GCCGGC 1 cut(s) 62
Kzo9I GATC 2 cut(s) 526, 665
LguI GCTCTTC 1 cut(s) 564
LmnI GCTCC 2 cut(s) 114, 122
Lsp1109I GCAGC 3 cut(s) 22, 249, 472
LweI GCATC 2 cut(s) 96, 538
MaeII ACGT 2 cut(s) 366, 621
MalI GATC 2 cut(s) 528, 667
MbiI CCGCTC 2 cut(s) 117, 574
MboI GATC 2 cut(s) 526, 665
MboII GAAGA 5 cut(s) 332, 489, 536, 581, 596
MflI RGATCY 1 cut(s) 526
MhlI GDGCHC 2 cut(s) 132, 206
Mly113I GGCGCC 2 cut(s) 64, 216
MlyI GAGTC 1 cut(s) 404
Mph1103I ATGCAT 1 cut(s) 553
MroI TCCGGA 1 cut(s) 424
MroNI GCCGGC 1 cut(s) 60
MseI TTAA 3 cut(s) 654, 675, 694
MslI CAYNNNNRTG 2 cut(s) 95, 275
MspA1I CMGCKG 1 cut(s) 355
MspI CCGG 6 cut(s) 61, 219, 294, 312, 383, 425
MspR9I CCNGG 2 cut(s) 294, 384
Mva1269I GAATGC 3 cut(s) 20, 438, 551
MwoI GCNNNNNNNGC 1 cut(s) 243
NaeI GCCGGC 1 cut(s) 62
NarI GGCGCC 2 cut(s) 64, 216
NciI CCSGG 2 cut(s) 294, 384
NdeII GATC 2 cut(s) 526, 665
NgoMIV GCCGGC 1 cut(s) 60
NlaIII CATG 2 cut(s) 274, 615
NlaIV GGNNCC 4 cut(s) 65, 217, 223, 304
NsiI ATGCAT 1 cut(s) 553
NspV TTCGAA 1 cut(s) 377
OliI CACNNNNGTG 1 cut(s) 95
PceI AGGCCT 1 cut(s) 460
PciSI GCTCTTC 1 cut(s) 564
PcsI WCGNNNNNNNCGW 2 cut(s) 333, 339
PctI GAATGC 3 cut(s) 20, 438, 551
PdiI GCCGGC 1 cut(s) 62
PkrI GCNGC 5 cut(s) 37, 239, 307, 310, 487
PleI GAGTC 1 cut(s) 403
PluTI GGCGCC 2 cut(s) 67, 219
PpsI GAGTC 1 cut(s) 403
PspN4I GGNNCC 4 cut(s) 65, 217, 223, 304
PspPI GGNCC 2 cut(s) 221, 512
PsuI RGATCY 1 cut(s) 526
PvuII CAGCTG 1 cut(s) 355
RseI CAYNNNNRTG 2 cut(s) 95, 275
SapI GCTCTTC 1 cut(s) 564
SaqAI TTAA 3 cut(s) 654, 675, 694
SatI GCNGC 5 cut(s) 36, 238, 306, 309, 486
Sau3AI GATC 2 cut(s) 526, 665
Sau96I GGNCC 2 cut(s) 221, 512
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 2 cut(s) 294, 384
SduI GDGCHC 2 cut(s) 132, 206
SetI ASST 8 cut(s) 57, 242, 304, 357, 369, 375, 563, 624
SfaNI GCATC 2 cut(s) 96, 538
SfoI GGCGCC 2 cut(s) 65, 217
SfuI TTCGAA 1 cut(s) 377
SinI GGWCC 1 cut(s) 221
SmiMI CAYNNNNRTG 2 cut(s) 95, 275
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
SseBI AGGCCT 1 cut(s) 460
SsiI CCGC 8 cut(s) 75, 81, 87, 115, 297, 306, 309, 574
SspDI GGCGCC 2 cut(s) 63, 215
SspI AATATT 1 cut(s) 286
StuI AGGCCT 1 cut(s) 460
StyD4I CCNGG 2 cut(s) 292, 382
TaaI ACNGT 2 cut(s) 193, 661
TaiI ACGT 2 cut(s) 369, 624
TaqI TCGA 5 cut(s) 104, 210, 369, 377, 607
TaqII GACCGA 1 cut(s) 256
TauI GCSGC 2 cut(s) 308, 311
Tru1I TTAA 3 cut(s) 654, 675, 694
Tru9I TTAA 3 cut(s) 654, 675, 694
TscAI CASTG 1 cut(s) 48
TseI GCWGC 3 cut(s) 35, 237, 485
TspDTI ATGAA 2 cut(s) 549, 693
TspRI CASTG 1 cut(s) 48
VpaK11BI GGWCC 1 cut(s) 221
Zsp2I ATGCAT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.