Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0012515

Physical Location & Seq

Genomic Coordinates Reverse (-)

5775839 .. 5777811

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTGGAGGAAATTATCAGTAGGGTTTGCTGCACTGACGCAGCAGCAGCTATGTTGGCGCCACTCCACGGCCACGGCCACTGCTGTGAACTCGATGCTCCTCCGCTCCCTGAAAGAGCACTATCTGGAAGTGTCCAAAATGACCCCTCCCCCTAAAGTGAACCCTCCATCGCCTTTCACCGTCGTCAAGGGCGCCCTCGACGGCACCGGCCCCGTCCTCAGGCGCAGCTACGGCGACGAAGAAATCAGCATAGCCGTGATGCGATTGGCCAATATTATTCCCGACGCCGACGCCGACGCCGACGACATCAACCAGTTGTTCATACACGTGGACGTTTCGAAGCCCAGCGAGAAGGAGTCTCTGCTTTTCCTCTGCGCCCTGTATCCGGACGCCTTAGGCATTCACTCTGTCTCTATGAGGCGCATGGCTGAACCCTCTGCGCTTCGTTCCTCTGCTCTTCGTTATAACGGCCCTCGTTTTGAGTATTATGCATATGCTATTGCTTGGAATGGTTCAGCCACTTGTCACAATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

MAM33

Protein Analysis

179

Amino Acids

19.7

Weight (kDa)

7.75

Isoelectric Point (pI)

54.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32605
fragaria_vesca	FvH4_7g05420 FvH4_7g05420 FvH4_7g05470 FvH4_7g05470
malus_domestica	MD02G1258000.v1.1
prunus_persica	Prupe.2G074600_v2.0.a1
pyrus_communis	pycom02g21920 pycom07g04810
rosa_chinensis	RchiOBHm_Chr1g0332231
rosa_laevigata	RLG00000029684
rosa_multiflora	Rmu_sc0000733.1_g000003
rosa_roxburghii	Rroxscaffold_4G00318340
rosa_rugosa	Rorug01G0099100
rosa_samantha	Rh1AG122900 Rh1BG094000 Rh1CG117500 Rh1DG128300
rosa_wichuraiana	Rw1G010020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	465
AccB1I	GGYRCC	3 cut(s)	57, 191, 203
AccBSI	CCGCTC	1 cut(s)	105
AccIII	TCCGGA	1 cut(s)	385
AciI	CCGC	1 cut(s)	103
AcoI	YGGCCR	3 cut(s)	69, 75, 267
AcvI	CACGTG	1 cut(s)	328
AcyI	GRCGYC	6 cut(s)	58, 192, 285, 291, 297, 390
AdeI	CACNNNGTG	1 cut(s)	532
AfiI	CCNNNNNNNGG	3 cut(s)	67, 219, 385
AflIII	ACRYGT	1 cut(s)	325
AleI	CACNNNNGTG	1 cut(s)	83
AluBI	AGCT	2 cut(s)	49, 228
AluI	AGCT	2 cut(s)	49, 228
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	2 cut(s)	363, 415
Aor13HI	TCCGGA	1 cut(s)	385
AoxI	GGCC	5 cut(s)	69, 75, 208, 267, 469
ApeKI	GCWGC	5 cut(s)	29, 40, 43, 46, 225
AspLEI	GCGC	6 cut(s)	60, 194, 225, 377, 423, 442
AspS9I	GGNCC	2 cut(s)	209, 470
AsuHPI	GGTGA	1 cut(s)	169
AsuII	TTCGAA	1 cut(s)	338
AxyI	CCTNAGG	2 cut(s)	218, 394
BalI	TGGCCA	1 cut(s)	269
BanI	GGYRCC	3 cut(s)	57, 191, 203
BbrPI	CACGTG	1 cut(s)	328
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	5 cut(s)	16, 52, 55, 58, 237
BccI	CCATC	1 cut(s)	175
BceAI	ACGGC	6 cut(s)	84, 90, 217, 239, 247, 484
BciVI	GTATCC	1 cut(s)	393
BcoDI	GTCTC	2 cut(s)	363, 415
BfoI	RGCGCY	2 cut(s)	61, 195
BfuI	GTATCC	1 cut(s)	393
BisI	GCNGC	5 cut(s)	30, 41, 44, 47, 226
BlsI	GCNGC	5 cut(s)	31, 42, 45, 48, 227
BmgT120I	GGNCC	2 cut(s)	209, 470
BmiI	GGNNCC	4 cut(s)	59, 193, 205, 211
BmsI	GCATC	2 cut(s)	84, 249
Bpu14I	TTCGAA	1 cut(s)	338
BsaAI	YACGTR	1 cut(s)	328
BsaHI	GRCGYC	6 cut(s)	58, 192, 285, 291, 297, 390
BsaJI	CCNNGG	2 cut(s)	66, 72
BsaWI	WCCGGW	1 cut(s)	385
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 219, 385
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	313
Bse21I	CCTNAGG	2 cut(s)	218, 394
BseAI	TCCGGA	1 cut(s)	385
BseDI	CCNNGG	2 cut(s)	66, 72
BseLI	CCNNNNNNNGG	3 cut(s)	67, 219, 385
BseMII	CTCAG	1 cut(s)	232
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	5 cut(s)	16, 52, 55, 58, 237
BseYI	CCCAGC	1 cut(s)	344
BsgI	GTGCAG	1 cut(s)	15
BshFI	GGCC	5 cut(s)	71, 77, 210, 269, 471
BshNI	GGYRCC	3 cut(s)	57, 191, 203
BsiHKAI	GWGCWC	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	207, 386
BslI	CCNNNNNNNGG	3 cut(s)	67, 219, 385
BsmAI	GTCTC	2 cut(s)	363, 415
BsmI	GAATGC	1 cut(s)	399
BsnI	GGCC	5 cut(s)	71, 77, 210, 269, 471
Bsp119I	TTCGAA	1 cut(s)	338
Bsp1286I	GDGCHC	1 cut(s)	120
Bsp13I	TCCGGA	1 cut(s)	385
BspACI	CCGC	1 cut(s)	103
BspANI	GGCC	5 cut(s)	71, 77, 210, 269, 471
BspCNI	CTCAG	1 cut(s)	231
BspEI	TCCGGA	1 cut(s)	385
BspLI	GGNNCC	4 cut(s)	59, 193, 205, 211
BspQI	GCTCTTC	1 cut(s)	462
BspT104I	TTCGAA	1 cut(s)	338
BspT107I	GGYRCC	3 cut(s)	57, 191, 203
BsrBI	CCGCTC	1 cut(s)	105
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	313
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	2 cut(s)	66, 72
BssNI	GRCGYC	6 cut(s)	58, 192, 285, 291, 297, 390
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	462
BstACI	GRCGYC	6 cut(s)	58, 192, 285, 291, 297, 390
BstBAI	YACGTR	1 cut(s)	328
BstBI	TTCGAA	1 cut(s)	338
BstDEI	CTNAG	2 cut(s)	218, 394
BstDSI	CCRYGG	2 cut(s)	66, 72
BstH2I	RGCGCY	2 cut(s)	61, 195
BstHHI	GCGC	6 cut(s)	60, 194, 225, 377, 423, 442
BstMAI	GTCTC	2 cut(s)	363, 415
BstMWI	GCNNNNNNNGC	3 cut(s)	46, 55, 231
BstV1I	GCAGC	5 cut(s)	16, 52, 55, 58, 237
Bsu36I	CCTNAGG	2 cut(s)	218, 394
BsuI	GTATCC	1 cut(s)	393
BsuRI	GGCC	5 cut(s)	71, 77, 210, 269, 471
BtgI	CCRYGG	2 cut(s)	66, 72
BtgZI	GCGATG	1 cut(s)	153
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	2 cut(s)	32, 78
CfoI	GCGC	6 cut(s)	60, 194, 225, 377, 423, 442
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	2 cut(s)	209, 470
CseI	GACGC	5 cut(s)	46, 293, 299, 305, 398
CviAII	CATG	1 cut(s)	424
DdeI	CTNAG	2 cut(s)	218, 394
DinI	GGCGCC	2 cut(s)	59, 193
DraIII	CACNNNGTG	1 cut(s)	532
EaeI	YGGCCR	3 cut(s)	69, 75, 267
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco72I	CACGTG	1 cut(s)	328
Eco81I	CCTNAGG	2 cut(s)	218, 394
EcoT22I	ATGCAT	1 cut(s)	493
EgeI	GGCGCC	2 cut(s)	59, 193
EheI	GGCGCC	2 cut(s)	59, 193
FaeI	CATG	1 cut(s)	427
FaiI	YATR	9 cut(s)	52, 251, 323, 416, 425, 465, 489, 493, 495
FatI	CATG	1 cut(s)	423
FauNDI	CATATG	1 cut(s)	493
Fnu4HI	GCNGC	5 cut(s)	30, 41, 44, 47, 226
Fsp4HI	GCNGC	5 cut(s)	30, 41, 44, 47, 226
GlaI	GCGC	6 cut(s)	59, 193, 224, 376, 422, 441
GluI	GCNGC	5 cut(s)	30, 41, 44, 47, 226
GsaI	CCCAGC	1 cut(s)	348
HaeII	RGCGCY	2 cut(s)	61, 195
HaeIII	GGCC	5 cut(s)	71, 77, 210, 269, 471
HapII	CCGG	2 cut(s)	207, 386
HgaI	GACGC	5 cut(s)	46, 293, 299, 305, 398
HhaI	GCGC	6 cut(s)	60, 194, 225, 377, 423, 442
Hin1I	GRCGYC	6 cut(s)	58, 192, 285, 291, 297, 390
Hin1II	CATG	1 cut(s)	427
Hin6I	GCGC	6 cut(s)	58, 192, 223, 375, 421, 440
HinP1I	GCGC	6 cut(s)	58, 192, 223, 375, 421, 440
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	2 cut(s)	207, 386
HphI	GGTGA	1 cut(s)	169
Hpy166II	GTNNAC	3 cut(s)	88, 160, 331
Hpy188III	TCNNGA	3 cut(s)	125, 281, 386
Hpy8I	GTNNAC	3 cut(s)	88, 160, 331
Hpy99I	CGWCG	7 cut(s)	185, 203, 239, 287, 293, 299, 305
HpyAV	CCTTC	1 cut(s)	346
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	2 cut(s)	327, 333
HpyCH4V	TGCA	2 cut(s)	32, 491
HpyF10VI	GCNNNNNNNGC	3 cut(s)	46, 55, 231
HpyF3I	CTNAG	2 cut(s)	218, 394
HpySE526I	ACGT	2 cut(s)	327, 333
Hsp92I	GRCGYC	6 cut(s)	58, 192, 285, 291, 297, 390
Hsp92II	CATG	1 cut(s)	427
HspAI	GCGC	6 cut(s)	58, 192, 223, 375, 421, 440
KasI	GGCGCC	2 cut(s)	57, 191
Kpn2I	TCCGGA	1 cut(s)	385
LguI	GCTCTTC	1 cut(s)	462
LmnI	GCTCC	2 cut(s)	102, 110
LpnPI	CCDG	8 cut(s)	110, 122, 205, 220, 326, 358, 392, 399
Lsp1109I	GCAGC	5 cut(s)	16, 52, 55, 58, 237
LweI	GCATC	2 cut(s)	84, 249
MaeII	ACGT	2 cut(s)	327, 333
MaeIII	GTNAC	1 cut(s)	524
MbiI	CCGCTC	1 cut(s)	105
MboII	GAAGA	2 cut(s)	251, 449
MhlI	GDGCHC	1 cut(s)	120
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	1 cut(s)	11
MluNI	TGGCCA	1 cut(s)	269
Mly113I	GGCGCC	2 cut(s)	58, 192
MlyI	GAGTC	1 cut(s)	365
Mox20I	TGGCCA	1 cut(s)	269
Mph1103I	ATGCAT	1 cut(s)	493
MroI	TCCGGA	1 cut(s)	385
MscI	TGGCCA	1 cut(s)	269
MslI	CAYNNNNRTG	3 cut(s)	83, 254, 326
Msp20I	TGGCCA	1 cut(s)	269
MspI	CCGG	2 cut(s)	207, 386
Mva1269I	GAATGC	1 cut(s)	399
MwoI	GCNNNNNNNGC	3 cut(s)	46, 55, 231
NarI	GGCGCC	2 cut(s)	58, 192
NdeI	CATATG	1 cut(s)	493
NlaIII	CATG	1 cut(s)	427
NlaIV	GGNNCC	4 cut(s)	59, 193, 205, 211
NmuCI	GTSAC	1 cut(s)	524
NsiI	ATGCAT	1 cut(s)	493
NspV	TTCGAA	1 cut(s)	338
OliI	CACNNNNGTG	1 cut(s)	83
PciSI	GCTCTTC	1 cut(s)	462
PcsI	WCGNNNNNNNCGW	2 cut(s)	291, 297
PctI	GAATGC	1 cut(s)	399
PkrI	GCNGC	5 cut(s)	31, 42, 45, 48, 227
PleI	GAGTC	1 cut(s)	364
PluTI	GGCGCC	2 cut(s)	61, 195
PmaCI	CACGTG	1 cut(s)	328
PmlI	CACGTG	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	364
Ppu21I	YACGTR	1 cut(s)	328
PsiI	TTATAA	1 cut(s)	465
PspCI	CACGTG	1 cut(s)	328
PspFI	CCCAGC	1 cut(s)	344
PspN4I	GGNNCC	4 cut(s)	59, 193, 205, 211
PspPI	GGNCC	2 cut(s)	209, 470
RseI	CAYNNNNRTG	3 cut(s)	83, 254, 326
SapI	GCTCTTC	1 cut(s)	462
SatI	GCNGC	5 cut(s)	30, 41, 44, 47, 226
Sau96I	GGNCC	2 cut(s)	209, 470
SchI	GAGTC	1 cut(s)	365
SduI	GDGCHC	1 cut(s)	120
SetI	ASST	4 cut(s)	51, 230, 330, 336
SfaNI	GCATC	2 cut(s)	84, 249
SfoI	GGCGCC	2 cut(s)	59, 193
SfuI	TTCGAA	1 cut(s)	338
SmiMI	CAYNNNNRTG	3 cut(s)	83, 254, 326
Sse9I	AATT	1 cut(s)	11
SsiI	CCGC	1 cut(s)	103
SspDI	GGCGCC	2 cut(s)	57, 191
SspI	AATATT	1 cut(s)	274
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	2 cut(s)	330, 336
TaqI	TCGA	3 cut(s)	92, 198, 338
TasI	AATT	1 cut(s)	11
TscAI	CASTG	2 cut(s)	39, 85
TseFI	GTSAC	1 cut(s)	524
TseI	GCWGC	5 cut(s)	29, 40, 43, 46, 225
Tsp45I	GTSAC	1 cut(s)	524
TspDTI	ATGAA	1 cut(s)	310
TspRI	CASTG	2 cut(s)	39, 85
Zsp2I	ATGCAT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.