pycom07g04810

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0012515
Physical Location & Seq
Reverse (-)
4125344 .. 4127089
1746 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g04810.2

Sequence Viewer

Length: 642 bp
ATGTGGAGGAAAGCCATAGCAACAGCAGCGGCAAGACGCTTCGGCGCCGCACTTCACCACCCGTGGCGCACGATAGCACGCCCCCACTCAACAACCGCATCCCCTTCCACCGCCGTCGACTCTGTTATCCTGCGGTCCCTCAAGGAACACTATATCGATGCCCAGAAAATGAACCCTCCCCCAAAAATCAACCCTCCATCGCCCTTCACAGTCGTCCAGGGCTCGCTTGACGGCAACGGCCCGGCTCTCAAGCGGACTTACGGCCGTGAAGAGATCACCATATCGGTAATGCGAATGGCCAATATAATTCCCGGCGATGGCGAAGGTGGAGAAGACGACGATGCCGATGACACGAACCAGTTGTTCCTGCACCTCGACGTTTCAAAGCCCGGGCAGAAGGAGTCTCTGCATTTTCTTTGTGCTTTGTATCCGGATGCTTTGGGAATTCACTCTGTCTCCTTGCGCAGAAATGCCGATTTTTCGAGCTCTCTTGATGTTGCTTCCACATATAATGGCCCTGTTTTTGAAGATCTTGATGAAACGACGAGGGACGCGTTCCACAATTACGTAGAAGAGCGGGGTGTGAGTGAAAGTCTGTTTCCGTTTCTTCGAGCATGGCTTTATGTCAAAGATCGATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

214

Amino Acids

23.62

Weight (kDa)

5.89

Isoelectric Point (pI)

48.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32605
fragaria_vesca FvH4_7g05420 FvH4_7g05420 FvH4_7g05470 FvH4_7g05470
malus_domestica MD02G1258000.v1.1
prunus_persica Prupe.2G074600_v2.0.a1
pyrus_communis pycom02g21920 pycom07g04810
rosa_chinensis RchiOBHm_Chr1g0332231
rosa_laevigata RLG00000029684
rosa_multiflora Rmu_sc0000733.1_g000003
rosa_roxburghii Rroxscaffold_4G00318340
rosa_rugosa Rorug01G0099100
rosa_samantha Rh1AG122900 Rh1BG094000 Rh1CG117500 Rh1DG128300
rosa_wichuraiana Rw1G010020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 464
AccB1I GGYRCC 1 cut(s) 44
AccBSI CCGCTC 1 cut(s) 577
AccI GTMKAC 1 cut(s) 117
AccII CGCG 1 cut(s) 554
AccIII TCCGGA 1 cut(s) 430
AciI CCGC 7 cut(s) 29, 48, 96, 111, 133, 253, 577
AcoI YGGCCR 2 cut(s) 262, 297
AcsI RAATTY 1 cut(s) 444
AcyI GRCGYC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 317
AflIII ACRYGT 1 cut(s) 552
AgsI TTSAA 2 cut(s) 384, 527
AjnI CCWGG 1 cut(s) 216
AluBI AGCT 1 cut(s) 486
AluI AGCT 1 cut(s) 486
Alw21I GWGCWC 1 cut(s) 488
Alw26I GTCTC 2 cut(s) 408, 460
Ama87I CYCGRG 1 cut(s) 389
Aor13HI TCCGGA 1 cut(s) 430
AoxI GGCC 4 cut(s) 238, 262, 297, 514
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 444
AspLEI GCGC 3 cut(s) 47, 69, 465
AspS9I GGNCC 3 cut(s) 135, 239, 515
AsuC2I CCSGG 4 cut(s) 242, 312, 390, 391
AsuHPI GGTGA 2 cut(s) 47, 268
AvaI CYCGRG 1 cut(s) 389
AvaII GGWCC 1 cut(s) 135
BalI TGGCCA 1 cut(s) 299
BanI GGYRCC 1 cut(s) 44
BanII GRGCYC 2 cut(s) 224, 488
BbsI GAAGAC 1 cut(s) 339
Bbv12I GWGCWC 1 cut(s) 488
BbvI GCAGC 1 cut(s) 38
BccI CCATC 2 cut(s) 205, 311
BceAI ACGGC 5 cut(s) 98, 247, 249, 253, 277
BciT130I CCWGG 1 cut(s) 218
BciVI GTATCC 1 cut(s) 438
BcnI CCSGG 4 cut(s) 242, 312, 390, 391
BcoDI GTCTC 2 cut(s) 408, 460
BfoI RGCGCY 1 cut(s) 48
BfuI GTATCC 1 cut(s) 438
BglII AGATCT 1 cut(s) 529
BisI GCNGC 3 cut(s) 27, 30, 48
BlsI GCNGC 3 cut(s) 28, 31, 49
Bme1390I CCNGG 5 cut(s) 218, 242, 312, 390, 391
Bme18I GGWCC 1 cut(s) 135
BmeT110I CYCGRG 1 cut(s) 389
BmgT120I GGNCC 3 cut(s) 135, 239, 515
BmiI GGNNCC 2 cut(s) 46, 137
BmrFI CCNGG 5 cut(s) 218, 242, 312, 390, 391
BmsI GCATC 4 cut(s) 107, 148, 331, 424
BpiI GAAGAC 1 cut(s) 339
BpuEI CTTGAG 2 cut(s) 125, 233
BpuMI CCSGG 4 cut(s) 242, 312, 390, 391
Bsa29I ATCGAT 2 cut(s) 156, 634
BsaAI YACGTR 1 cut(s) 568
BsaHI GRCGYC 1 cut(s) 45
BsaJI CCNNGG 3 cut(s) 62, 217, 389
BsaWI WCCGGW 1 cut(s) 430
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bsc4I CCNNNNNNNGG 1 cut(s) 317
Bse1I ACTGG 1 cut(s) 358
BseAI TCCGGA 1 cut(s) 430
BseBI CCWGG 1 cut(s) 218
BseCI ATCGAT 2 cut(s) 156, 634
BseDI CCNNGG 3 cut(s) 62, 217, 389
BseGI GGATG 2 cut(s) 98, 439
BseLI CCNNNNNNNGG 1 cut(s) 317
BseNI ACTGG 1 cut(s) 358
BseX3I CGGCCG 1 cut(s) 262
BseXI GCAGC 1 cut(s) 38
BsgI GTGCAG 1 cut(s) 353
Bsh1236I CGCG 1 cut(s) 554
Bsh1285I CGRYCG 2 cut(s) 265, 638
BshFI GGCC 4 cut(s) 240, 264, 299, 516
BshNI GGYRCC 1 cut(s) 44
BshVI ATCGAT 2 cut(s) 156, 634
BsiEI CGRYCG 2 cut(s) 265, 638
BsiHKAI GWGCWC 1 cut(s) 488
BsiHKCI CYCGRG 1 cut(s) 389
BsiSI CCGG 4 cut(s) 242, 312, 390, 431
BslFI GGGAC 2 cut(s) 121, 563
BslI CCNNNNNNNGG 1 cut(s) 317
BsmAI GTCTC 2 cut(s) 408, 460
BsmFI GGGAC 2 cut(s) 121, 563
BsnI GGCC 4 cut(s) 240, 264, 299, 516
BsoBI CYCGRG 1 cut(s) 389
Bsp1286I GDGCHC 2 cut(s) 224, 488
Bsp13I TCCGGA 1 cut(s) 430
Bsp143I GATC 4 cut(s) 273, 529, 631, 635
BspACI CCGC 7 cut(s) 29, 48, 96, 111, 133, 253, 577
BspANI GGCC 4 cut(s) 240, 264, 299, 516
BspDI ATCGAT 2 cut(s) 156, 634
BspEI TCCGGA 1 cut(s) 430
BspFNI CGCG 1 cut(s) 554
BspLI GGNNCC 2 cut(s) 46, 137
BspQI GCTCTTC 1 cut(s) 567
BspT107I GGYRCC 1 cut(s) 44
BsrBI CCGCTC 1 cut(s) 577
BsrI ACTGG 1 cut(s) 358
BssECI CCNNGG 3 cut(s) 62, 217, 389
BssMI GATC 4 cut(s) 273, 529, 631, 635
BssNI GRCGYC 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 1 cut(s) 211
Bst6I CTCTTC 2 cut(s) 264, 567
BstACI GRCGYC 1 cut(s) 45
BstBAI YACGTR 1 cut(s) 568
BstC8I GCNNGC 2 cut(s) 79, 224
BstDSI CCRYGG 1 cut(s) 62
BstF5I GGATG 2 cut(s) 98, 439
BstFNI CGCG 1 cut(s) 554
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 3 cut(s) 47, 69, 465
BstKTI GATC 4 cut(s) 276, 532, 634, 638
BstMAI GTCTC 2 cut(s) 408, 460
BstMBI GATC 4 cut(s) 273, 529, 631, 635
BstMCI CGRYCG 2 cut(s) 265, 638
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNI CCWGG 1 cut(s) 218
BstSCI CCNGG 5 cut(s) 216, 240, 310, 388, 389
BstSNI TACGTA 1 cut(s) 568
BstUI CGCG 1 cut(s) 554
BstV1I GCAGC 1 cut(s) 38
BstV2I GAAGAC 1 cut(s) 339
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BstZI CGGCCG 1 cut(s) 262
Bsu15I ATCGAT 2 cut(s) 156, 634
BsuI GTATCC 1 cut(s) 438
BsuRI GGCC 4 cut(s) 240, 264, 299, 516
BsuTUI ATCGAT 2 cut(s) 156, 634
BtgI CCRYGG 1 cut(s) 62
BtgZI GCGATG 2 cut(s) 183, 330
BtsCI GGATG 2 cut(s) 98, 439
Cac8I GCNNGC 2 cut(s) 79, 224
CfoI GCGC 3 cut(s) 47, 69, 465
Cfr13I GGNCC 3 cut(s) 135, 239, 515
Cfr9I CCCGGG 1 cut(s) 389
ClaI ATCGAT 2 cut(s) 156, 634
CseI GACGC 2 cut(s) 45, 560
CviAII CATG 1 cut(s) 615
DinI GGCGCC 1 cut(s) 46
DpnI GATC 4 cut(s) 275, 531, 633, 637
DpnII GATC 4 cut(s) 273, 529, 631, 635
EaeI YGGCCR 2 cut(s) 262, 297
EagI CGGCCG 1 cut(s) 262
Eam1104I CTCTTC 2 cut(s) 264, 567
EarI CTCTTC 2 cut(s) 264, 567
Ecl136II GAGCTC 1 cut(s) 486
EclXI CGGCCG 1 cut(s) 262
Eco105I TACGTA 1 cut(s) 568
Eco24I GRGCYC 2 cut(s) 224, 488
Eco47I GGWCC 1 cut(s) 135
Eco52I CGGCCG 1 cut(s) 262
Eco53kI GAGCTC 1 cut(s) 486
Eco88I CYCGRG 1 cut(s) 389
EcoICRI GAGCTC 1 cut(s) 486
EcoRI GAATTC 1 cut(s) 444
EcoRII CCWGG 1 cut(s) 216
EcoT38I GRGCYC 2 cut(s) 224, 488
EgeI GGCGCC 1 cut(s) 46
EheI GGCGCC 1 cut(s) 46
FaeI CATG 1 cut(s) 618
FaiI YATR 8 cut(s) 17, 153, 281, 305, 508, 510, 616, 624
FaqI GGGAC 2 cut(s) 121, 563
FatI CATG 1 cut(s) 614
FauI CCCGC 1 cut(s) 570
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 3 cut(s) 27, 30, 48
FokI GGATG 2 cut(s) 85, 446
FriOI GRGCYC 2 cut(s) 224, 488
Fsp4HI GCNGC 3 cut(s) 27, 30, 48
FspI TGCGCA 1 cut(s) 464
GlaI GCGC 3 cut(s) 46, 68, 464
GluI GCNGC 3 cut(s) 27, 30, 48
HaeII RGCGCY 1 cut(s) 48
HaeIII GGCC 4 cut(s) 240, 264, 299, 516
HapII CCGG 4 cut(s) 242, 312, 390, 431
HgaI GACGC 2 cut(s) 45, 560
HhaI GCGC 3 cut(s) 47, 69, 465
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 1 cut(s) 618
Hin6I GCGC 3 cut(s) 45, 67, 463
HinP1I GCGC 3 cut(s) 45, 67, 463
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 2 cut(s) 119, 401
HpaII CCGG 4 cut(s) 242, 312, 390, 431
HphI GGTGA 2 cut(s) 47, 268
Hpy166II GTNNAC 1 cut(s) 118
Hpy188III TCNNGA 3 cut(s) 431, 491, 533
Hpy8I GTNNAC 1 cut(s) 118
Hpy99I CGWCG 4 cut(s) 119, 341, 380, 547
HpyAV CCTTC 4 cut(s) 114, 214, 317, 391
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4IV ACGT 2 cut(s) 378, 567
HpyCH4V TGCA 2 cut(s) 370, 409
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpySE526I ACGT 2 cut(s) 378, 567
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 1 cut(s) 618
HspAI GCGC 3 cut(s) 45, 67, 463
KasI GGCGCC 1 cut(s) 44
Kpn2I TCCGGA 1 cut(s) 430
Kzo9I GATC 4 cut(s) 273, 529, 631, 635
LguI GCTCTTC 1 cut(s) 567
Lsp1109I GCAGC 1 cut(s) 38
LweI GCATC 4 cut(s) 107, 148, 331, 424
MaeII ACGT 2 cut(s) 378, 567
MalI GATC 4 cut(s) 275, 531, 633, 637
MbiI CCGCTC 1 cut(s) 577
MboI GATC 4 cut(s) 273, 529, 631, 635
MboII GAAGA 5 cut(s) 281, 344, 539, 584, 599
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 2 cut(s) 224, 488
MlsI TGGCCA 1 cut(s) 299
MluCI AATT 3 cut(s) 306, 444, 562
MluI ACGCGT 1 cut(s) 552
MluNI TGGCCA 1 cut(s) 299
Mly113I GGCGCC 1 cut(s) 45
MlyI GAGTC 2 cut(s) 113, 410
MnlI CCTC 5 cut(s) 149, 186, 204, 383, 540
Mox20I TGGCCA 1 cut(s) 299
MroI TCCGGA 1 cut(s) 430
MscI TGGCCA 1 cut(s) 299
Msp20I TGGCCA 1 cut(s) 299
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 4 cut(s) 242, 312, 390, 431
MspR9I CCNGG 5 cut(s) 218, 242, 312, 390, 391
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 1 cut(s) 554
MwoI GCNNNNNNNGC 1 cut(s) 26
NarI GGCGCC 1 cut(s) 45
NciI CCSGG 4 cut(s) 242, 312, 390, 391
NdeII GATC 4 cut(s) 273, 529, 631, 635
NlaIII CATG 1 cut(s) 618
NlaIV GGNNCC 2 cut(s) 46, 137
NsbI TGCGCA 1 cut(s) 464
PciSI GCTCTTC 1 cut(s) 567
PcsI WCGNNNNNNNCGW 2 cut(s) 342, 551
PkrI GCNGC 3 cut(s) 28, 31, 49
Ple19I CGATCG 1 cut(s) 638
PleI GAGTC 2 cut(s) 113, 409
PluTI GGCGCC 1 cut(s) 48
PpsI GAGTC 2 cut(s) 113, 409
Ppu21I YACGTR 1 cut(s) 568
Psp124BI GAGCTC 1 cut(s) 488
Psp6I CCWGG 1 cut(s) 216
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 2 cut(s) 46, 137
PspPI GGNCC 3 cut(s) 135, 239, 515
PsuI RGATCY 1 cut(s) 529
PvuI CGATCG 1 cut(s) 638
SacI GAGCTC 1 cut(s) 488
SalI GTCGAC 1 cut(s) 116
SapI GCTCTTC 1 cut(s) 567
SatI GCNGC 3 cut(s) 27, 30, 48
Sau3AI GATC 4 cut(s) 273, 529, 631, 635
Sau96I GGNCC 3 cut(s) 135, 239, 515
SchI GAGTC 2 cut(s) 113, 410
ScrFI CCNGG 5 cut(s) 218, 242, 312, 390, 391
SduI GDGCHC 2 cut(s) 224, 488
SetI ASST 5 cut(s) 328, 375, 381, 488, 570
SfaNI GCATC 4 cut(s) 107, 148, 331, 424
SfoI GGCGCC 1 cut(s) 46
SinI GGWCC 1 cut(s) 135
SmaI CCCGGG 1 cut(s) 391
SmlI CTYRAG 2 cut(s) 140, 248
SmoI CTYRAG 2 cut(s) 140, 248
SnaBI TACGTA 1 cut(s) 568
SrfI GCCCGGGC 1 cut(s) 391
Sse9I AATT 3 cut(s) 306, 444, 562
SsiI CCGC 7 cut(s) 29, 48, 96, 111, 133, 253, 577
SspDI GGCGCC 1 cut(s) 44
SstI GAGCTC 1 cut(s) 488
StyD4I CCNGG 5 cut(s) 216, 240, 310, 388, 389
TaaI ACNGT 1 cut(s) 211
TaiI ACGT 2 cut(s) 381, 570
TaqI TCGA 6 cut(s) 117, 156, 375, 482, 610, 634
TasI AATT 3 cut(s) 306, 444, 562
TauI GCSGC 2 cut(s) 32, 50
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 2 cut(s) 185, 552
TspGWI ACGGA 1 cut(s) 591
TspMI CCCGGG 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 135
XapI RAATTY 1 cut(s) 444
XmaI CCCGGG 1 cut(s) 389
XmiI GTMKAC 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.