Rh1BG094000

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0012515
Physical Location & Seq
Reverse (-)
16384298 .. 16386678
2381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG094000.1

Sequence Viewer

Length: 705 bp
ATGAGATCAATATCAATGTGGAGGAAAGCCACAGCATTGTCAGGGTTTGGTGCCACACTGAGCCACCACCTATGCCGGCGCCACTCCACCGCCACCGCCACCGCCACGGCTGTGAACTCGATGCTCCTCCGCTCCCTGAAAGAGCACTATCTGGAAGTGTCCAAAATGACCCCTCCCCCTAAAGTCAACCCTCCCTCGCCTTTCACCGTCGTCAAGGGCGCGCTCGACGGCGCCGGTCCCGTGCTCAAGCGCAGCTACGGCGACGAACAAATCAGCATATCGGTCATGCGAATGGATAATATTATTCCCGGCGGAGGTGCCGCCGCCGGAGGAGAAGACGACGACGACGACGACATCAACCAGTTGTTCCTACACGTCGAGGTTTCGAAGCCGGGACAGAAGGAGTCTCTGCTTTTTCTTTGTGGGCTGTATCCGGACGCCTTAGGCATTCACTCTGTCTCTATCAGGCCTATGGCCGACGCCTCTGATTACGCTGCGCCTCGTTCTTCAGCATATACTGGCCCTCTTTTTGAAGATCTTGATGAAGGGATGAAGGATGCATTCCACAGCTACATAGAAGAGCGGGGTGTGGGTGATAGTCTTTTTCCATTTCTTCGAGCATGGCTATACGTCAAAGACCATCGTAATCTTATGCGCTGGTTTAAAACAGTAGGATCATTTGTTAATGAAACCAAGTCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

234

Amino Acids

25.66

Weight (kDa)

6.23

Isoelectric Point (pI)

44.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 81 - 228 9.9e-24 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32605
fragaria_vesca FvH4_7g05420 FvH4_7g05420 FvH4_7g05470 FvH4_7g05470
malus_domestica MD02G1258000.v1.1
prunus_persica Prupe.2G074600_v2.0.a1
pyrus_communis pycom02g21920 pycom07g04810
rosa_chinensis RchiOBHm_Chr1g0332231
rosa_laevigata RLG00000029684
rosa_multiflora Rmu_sc0000733.1_g000003
rosa_roxburghii Rroxscaffold_4G00318340
rosa_rugosa Rorug01G0099100
rosa_samantha Rh1AG122900 Rh1BG094000 Rh1CG117500 Rh1DG128300
rosa_wichuraiana Rw1G010020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 50, 78, 230, 317
AccBSI CCGCTC 2 cut(s) 132, 583
AccII CGCG 1 cut(s) 221
AccIII TCCGGA 1 cut(s) 433
AciI CCGC 8 cut(s) 90, 96, 102, 130, 312, 321, 324, 583
AclWI GGATC 1 cut(s) 682
AcoI YGGCCR 1 cut(s) 474
AcuI CTGAAG 1 cut(s) 492
AcyI GRCGYC 4 cut(s) 79, 231, 438, 480
AfiI CCNNNNNNNGG 1 cut(s) 314
AflIII ACRYGT 1 cut(s) 373
AgsI TTSAA 1 cut(s) 533
AjiI CACGTC 1 cut(s) 376
AleI CACNNNNGTG 1 cut(s) 110
AluBI AGCT 2 cut(s) 255, 570
AluI AGCT 2 cut(s) 255, 570
Alw21I GWGCWC 2 cut(s) 147, 246
Alw26I GTCTC 2 cut(s) 411, 463
AlwI GGATC 1 cut(s) 682
Aor13HI TCCGGA 1 cut(s) 433
AoxI GGCC 3 cut(s) 467, 474, 520
ApeKI GCWGC 2 cut(s) 252, 494
AspLEI GCGC 7 cut(s) 81, 221, 223, 233, 252, 499, 657
AspS9I GGNCC 2 cut(s) 236, 521
AsuC2I CCSGG 2 cut(s) 309, 393
AsuHPI GGTGA 2 cut(s) 196, 605
AsuII TTCGAA 1 cut(s) 386
AvaII GGWCC 1 cut(s) 236
AxyI CCTNAGG 1 cut(s) 442
BanI GGYRCC 4 cut(s) 50, 78, 230, 317
BbsI GAAGAC 1 cut(s) 342
Bbv12I GWGCWC 2 cut(s) 147, 246
BbvI GCAGC 2 cut(s) 264, 481
BccI CCATC 1 cut(s) 648
BceAI ACGGC 3 cut(s) 123, 244, 274
BciVI GTATCC 1 cut(s) 441
BcnI CCSGG 2 cut(s) 309, 393
BcoDI GTCTC 2 cut(s) 411, 463
BfoI RGCGCY 2 cut(s) 82, 234
BfuI GTATCC 1 cut(s) 441
BglII AGATCT 1 cut(s) 535
BisI GCNGC 4 cut(s) 253, 321, 324, 495
BlsI GCNGC 4 cut(s) 254, 322, 325, 496
Bme1390I CCNGG 2 cut(s) 309, 393
Bme18I GGWCC 1 cut(s) 236
BmgBI CACGTC 1 cut(s) 376
BmgT120I GGNCC 2 cut(s) 236, 521
BmiI GGNNCC 5 cut(s) 52, 80, 232, 238, 319
BmrFI CCNGG 2 cut(s) 309, 393
BmsI GCATC 2 cut(s) 111, 547
BpiI GAAGAC 1 cut(s) 342
Bpu14I TTCGAA 1 cut(s) 386
BpuEI CTTGAG 1 cut(s) 230
BpuMI CCSGG 2 cut(s) 309, 393
BsaBI GATNNNNATC 1 cut(s) 10
BsaHI GRCGYC 4 cut(s) 79, 231, 438, 480
BsaJI CCNNGG 1 cut(s) 105
BsaWI WCCGGW 1 cut(s) 433
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse118I RCCGGY 2 cut(s) 75, 233
Bse1I ACTGG 2 cut(s) 361, 523
Bse21I CCTNAGG 1 cut(s) 442
Bse8I GATNNNNATC 1 cut(s) 10
BseAI TCCGGA 1 cut(s) 433
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 2 cut(s) 555, 562
BseJI GATNNNNATC 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMII CTCAG 1 cut(s) 50
BseNI ACTGG 2 cut(s) 361, 523
BsePI GCGCGC 1 cut(s) 219
BseRI GAGGAG 2 cut(s) 116, 345
BseXI GCAGC 2 cut(s) 264, 481
Bsh1236I CGCG 1 cut(s) 221
BshFI GGCC 3 cut(s) 469, 476, 522
BshNI GGYRCC 4 cut(s) 50, 78, 230, 317
BsiHKAI GWGCWC 2 cut(s) 147, 246
BsiSI CCGG 6 cut(s) 76, 234, 309, 327, 392, 434
BslFI GGGAC 2 cut(s) 222, 408
BslI CCNNNNNNNGG 1 cut(s) 314
BsmAI GTCTC 2 cut(s) 411, 463
BsmFI GGGAC 2 cut(s) 222, 408
BsmI GAATGC 2 cut(s) 447, 560
BsnI GGCC 3 cut(s) 469, 476, 522
Bsp119I TTCGAA 1 cut(s) 386
Bsp1286I GDGCHC 2 cut(s) 147, 246
Bsp13I TCCGGA 1 cut(s) 433
Bsp143I GATC 3 cut(s) 5, 535, 674
BspACI CCGC 8 cut(s) 90, 96, 102, 130, 312, 321, 324, 583
BspANI GGCC 3 cut(s) 469, 476, 522
BspCNI CTCAG 1 cut(s) 51
BspEI TCCGGA 1 cut(s) 433
BspFNI CGCG 1 cut(s) 221
BspLI GGNNCC 5 cut(s) 52, 80, 232, 238, 319
BspPI GGATC 1 cut(s) 682
BspQI GCTCTTC 1 cut(s) 573
BspT104I TTCGAA 1 cut(s) 386
BspT107I GGYRCC 4 cut(s) 50, 78, 230, 317
BsrBI CCGCTC 2 cut(s) 132, 583
BsrFI RCCGGY 2 cut(s) 75, 233
BsrI ACTGG 2 cut(s) 361, 523
BssAI RCCGGY 2 cut(s) 75, 233
BssECI CCNNGG 1 cut(s) 105
BssHII GCGCGC 1 cut(s) 219
BssMI GATC 3 cut(s) 5, 535, 674
BssNI GRCGYC 4 cut(s) 79, 231, 438, 480
Bst4CI ACNGT 2 cut(s) 208, 670
Bst6I CTCTTC 1 cut(s) 573
BstACI GRCGYC 4 cut(s) 79, 231, 438, 480
BstBI TTCGAA 1 cut(s) 386
BstC8I GCNNGC 2 cut(s) 77, 221
BstDEI CTNAG 2 cut(s) 59, 442
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 2 cut(s) 555, 562
BstFNI CGCG 1 cut(s) 221
BstH2I RGCGCY 2 cut(s) 82, 234
BstHHI GCGC 7 cut(s) 81, 221, 223, 233, 252, 499, 657
BstKTI GATC 3 cut(s) 8, 538, 677
BstMAI GTCTC 2 cut(s) 411, 463
BstMBI GATC 3 cut(s) 5, 535, 674
BstMWI GCNNNNNNNGC 1 cut(s) 258
BstSCI CCNGG 2 cut(s) 307, 391
BstUI CGCG 1 cut(s) 221
BstV1I GCAGC 2 cut(s) 264, 481
BstV2I GAAGAC 1 cut(s) 342
BstX2I RGATCY 1 cut(s) 535
BstYI RGATCY 1 cut(s) 535
Bsu36I CCTNAGG 1 cut(s) 442
BsuI GTATCC 1 cut(s) 441
BsuRI GGCC 3 cut(s) 469, 476, 522
BtgI CCRYGG 1 cut(s) 105
BtrI CACGTC 1 cut(s) 376
BtsCI GGATG 2 cut(s) 555, 562
BtsIMutI CAGTG 1 cut(s) 56
Cac8I GCNNGC 2 cut(s) 77, 221
CfoI GCGC 7 cut(s) 81, 221, 223, 233, 252, 499, 657
Cfr10I RCCGGY 2 cut(s) 75, 233
Cfr13I GGNCC 2 cut(s) 236, 521
CseI GACGC 2 cut(s) 446, 488
CviAII CATG 2 cut(s) 286, 621
DdeI CTNAG 2 cut(s) 59, 442
DinI GGCGCC 2 cut(s) 80, 232
DpnI GATC 3 cut(s) 7, 537, 676
DpnII GATC 3 cut(s) 5, 535, 674
DraI TTTAAA 1 cut(s) 664
EaeI YGGCCR 1 cut(s) 474
Eam1104I CTCTTC 1 cut(s) 573
EarI CTCTTC 1 cut(s) 573
EciI GGCGGA 1 cut(s) 327
Eco147I AGGCCT 1 cut(s) 469
Eco47I GGWCC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 492
Eco81I CCTNAGG 1 cut(s) 442
EcoT22I ATGCAT 1 cut(s) 562
EgeI GGCGCC 2 cut(s) 80, 232
EheI GGCGCC 2 cut(s) 80, 232
FaeI CATG 2 cut(s) 289, 624
FaqI GGGAC 2 cut(s) 222, 408
FatI CATG 2 cut(s) 285, 620
FauI CCCGC 1 cut(s) 576
Fnu4HI GCNGC 4 cut(s) 253, 321, 324, 495
FokI GGATG 2 cut(s) 562, 569
Fsp4HI GCNGC 4 cut(s) 253, 321, 324, 495
GlaI GCGC 7 cut(s) 80, 220, 222, 232, 251, 498, 656
GluI GCNGC 4 cut(s) 253, 321, 324, 495
HaeII RGCGCY 2 cut(s) 82, 234
HaeIII GGCC 3 cut(s) 469, 476, 522
HapII CCGG 6 cut(s) 76, 234, 309, 327, 392, 434
HgaI GACGC 2 cut(s) 446, 488
HhaI GCGC 7 cut(s) 81, 221, 223, 233, 252, 499, 657
Hin1I GRCGYC 4 cut(s) 79, 231, 438, 480
Hin1II CATG 2 cut(s) 289, 624
Hin6I GCGC 7 cut(s) 79, 219, 221, 231, 250, 497, 655
HinP1I GCGC 7 cut(s) 79, 219, 221, 231, 250, 497, 655
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HinfI GANTC 1 cut(s) 404
HpaII CCGG 6 cut(s) 76, 234, 309, 327, 392, 434
HphI GGTGA 2 cut(s) 196, 605
Hpy166II GTNNAC 2 cut(s) 115, 187
Hpy188I TCNGA 1 cut(s) 487
Hpy188III TCNNGA 3 cut(s) 152, 434, 539
Hpy8I GTNNAC 2 cut(s) 115, 187
Hpy99I CGWCG 9 cut(s) 212, 230, 266, 344, 347, 350, 353, 380, 482
HpyAV CCTTC 3 cut(s) 394, 539, 547
HpyCH4III ACNGT 2 cut(s) 208, 670
HpyCH4IV ACGT 2 cut(s) 375, 630
HpyCH4V TGCA 1 cut(s) 560
HpyF10VI GCNNNNNNNGC 1 cut(s) 258
HpyF3I CTNAG 2 cut(s) 59, 442
HpySE526I ACGT 2 cut(s) 375, 630
Hsp92I GRCGYC 4 cut(s) 79, 231, 438, 480
Hsp92II CATG 2 cut(s) 289, 624
HspAI GCGC 7 cut(s) 79, 219, 221, 231, 250, 497, 655
KasI GGCGCC 2 cut(s) 78, 230
Kpn2I TCCGGA 1 cut(s) 433
KroI GCCGGC 1 cut(s) 75
KroNI GCCGGC 1 cut(s) 77
Kzo9I GATC 3 cut(s) 5, 535, 674
LguI GCTCTTC 1 cut(s) 573
LmnI GCTCC 2 cut(s) 129, 137
Lsp1109I GCAGC 2 cut(s) 264, 481
LweI GCATC 2 cut(s) 111, 547
MaeII ACGT 2 cut(s) 375, 630
MalI GATC 3 cut(s) 7, 537, 676
MbiI CCGCTC 2 cut(s) 132, 583
MboI GATC 3 cut(s) 5, 535, 674
MboII GAAGA 5 cut(s) 347, 498, 545, 590, 605
MflI RGATCY 1 cut(s) 535
MhlI GDGCHC 2 cut(s) 147, 246
Mly113I GGCGCC 2 cut(s) 79, 231
MlyI GAGTC 1 cut(s) 413
Mph1103I ATGCAT 1 cut(s) 562
MroI TCCGGA 1 cut(s) 433
MroNI GCCGGC 1 cut(s) 75
MseI TTAA 3 cut(s) 663, 684, 703
MslI CAYNNNNRTG 2 cut(s) 110, 290
MspI CCGG 6 cut(s) 76, 234, 309, 327, 392, 434
MspR9I CCNGG 2 cut(s) 309, 393
Mva1269I GAATGC 2 cut(s) 447, 560
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 1 cut(s) 258
NaeI GCCGGC 1 cut(s) 77
NarI GGCGCC 2 cut(s) 79, 231
NciI CCSGG 2 cut(s) 309, 393
NdeII GATC 3 cut(s) 5, 535, 674
NgoMIV GCCGGC 1 cut(s) 75
NlaIII CATG 2 cut(s) 289, 624
NlaIV GGNNCC 5 cut(s) 52, 80, 232, 238, 319
NsiI ATGCAT 1 cut(s) 562
NspV TTCGAA 1 cut(s) 386
OliI CACNNNNGTG 1 cut(s) 110
PauI GCGCGC 1 cut(s) 219
PceI AGGCCT 1 cut(s) 469
PciSI GCTCTTC 1 cut(s) 573
PcsI WCGNNNNNNNCGW 2 cut(s) 345, 348
PctI GAATGC 2 cut(s) 447, 560
PdiI GCCGGC 1 cut(s) 77
PkrI GCNGC 4 cut(s) 254, 322, 325, 496
PleI GAGTC 1 cut(s) 412
PluTI GGCGCC 2 cut(s) 82, 234
PpsI GAGTC 1 cut(s) 412
PspN4I GGNNCC 5 cut(s) 52, 80, 232, 238, 319
PspPI GGNCC 2 cut(s) 236, 521
PsuI RGATCY 1 cut(s) 535
PteI GCGCGC 1 cut(s) 219
RseI CAYNNNNRTG 2 cut(s) 110, 290
SapI GCTCTTC 1 cut(s) 573
SaqAI TTAA 3 cut(s) 663, 684, 703
SatI GCNGC 4 cut(s) 253, 321, 324, 495
Sau3AI GATC 3 cut(s) 5, 535, 674
Sau96I GGNCC 2 cut(s) 236, 521
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 2 cut(s) 309, 393
SduI GDGCHC 2 cut(s) 147, 246
SetI ASST 7 cut(s) 72, 257, 319, 378, 384, 572, 633
SfaNI GCATC 2 cut(s) 111, 547
SfoI GGCGCC 2 cut(s) 80, 232
SfuI TTCGAA 1 cut(s) 386
SinI GGWCC 1 cut(s) 236
SmiMI CAYNNNNRTG 2 cut(s) 110, 290
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
SseBI AGGCCT 1 cut(s) 469
SsiI CCGC 8 cut(s) 90, 96, 102, 130, 312, 321, 324, 583
SspDI GGCGCC 2 cut(s) 78, 230
SspI AATATT 1 cut(s) 301
StuI AGGCCT 1 cut(s) 469
StyD4I CCNGG 2 cut(s) 307, 391
TaaI ACNGT 2 cut(s) 208, 670
TaiI ACGT 2 cut(s) 378, 633
TaqI TCGA 5 cut(s) 119, 225, 378, 386, 616
TaqII GACCGA 1 cut(s) 271
TauI GCSGC 2 cut(s) 323, 326
Tru1I TTAA 3 cut(s) 663, 684, 703
Tru9I TTAA 3 cut(s) 663, 684, 703
TscAI CASTG 1 cut(s) 63
TseI GCWGC 2 cut(s) 252, 494
TspDTI ATGAA 3 cut(s) 558, 566, 702
TspRI CASTG 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 236
Zsp2I ATGCAT 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.