Rh1AG122900

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0012515
Physical Location & Seq
Reverse (-)
22973032 .. 22975282
2251 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG122900.1

Sequence Viewer

Length: 540 bp
ATGACCCCTCCTCCTAAAGTCAACCCTCCCTCGCCTTTCACCGTCGTCAAGGGCGCGCTCGACGGCGCCGGTCCCGTGCTCAAGCGCAGCTACGGCGACGAACAAATCAGCATATCGGTCATGCGAATGGATAATATTATTCCCGGCGCAGGTGCCGCCGCCGGAGGCGAAGACGACGACGACGACGCCATCAACCAGTTGTTCCTACACGTCGAGGTTTCGAAGCCGGGACAGAAGGAGTCTCTGCTTTTTCTTTGTGGGCTGTATCCGGACGCCTTAGGCATTCACTCTGTCTCTATCAGGCCTATGGCCGACGCCTCTGATTACGCTGCGCCTCGTTCTTCAGCATATACTGGCCCTCTTTTTGAAGATCTTGATGAAGGGATGAAGGATGCATTCCACAGCTACATAGAAGAGCGGGGTGTGGGTGATAGTCTTTTTCCATTTCTTCGAGCATGGCTATACGTCAAAGACCATCGTAATCTTATGCGCTGGTTTAAAACGGTAGGATCATTTGTTAATGAAACCAAGTCAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

179

Amino Acids

19.54

Weight (kDa)

4.91

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 26 - 173 4e-24 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012515)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G32605
fragaria_vesca FvH4_7g05420 FvH4_7g05420 FvH4_7g05470 FvH4_7g05470
malus_domestica MD02G1258000.v1.1
prunus_persica Prupe.2G074600_v2.0.a1
pyrus_communis pycom02g21920 pycom07g04810
rosa_chinensis RchiOBHm_Chr1g0332231
rosa_laevigata RLG00000029684
rosa_multiflora Rmu_sc0000733.1_g000003
rosa_roxburghii Rroxscaffold_4G00318340
rosa_rugosa Rorug01G0099100
rosa_samantha Rh1AG122900 Rh1BG094000 Rh1CG117500 Rh1DG128300
rosa_wichuraiana Rw1G010020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 140
Acc36I ACCTGC 1 cut(s) 140
AccB1I GGYRCC 2 cut(s) 65, 152
AccBSI CCGCTC 1 cut(s) 418
AccII CGCG 1 cut(s) 56
AccIII TCCGGA 1 cut(s) 268
AciI CCGC 3 cut(s) 156, 159, 418
AclWI GGATC 1 cut(s) 517
AcoI YGGCCR 1 cut(s) 309
AcuI CTGAAG 1 cut(s) 327
AcyI GRCGYC 4 cut(s) 66, 186, 273, 315
AfiI CCNNNNNNNGG 1 cut(s) 149
AflIII ACRYGT 1 cut(s) 208
AgsI TTSAA 1 cut(s) 368
AjiI CACGTC 1 cut(s) 211
AluBI AGCT 2 cut(s) 90, 405
AluI AGCT 2 cut(s) 90, 405
Alw21I GWGCWC 1 cut(s) 81
Alw26I GTCTC 2 cut(s) 246, 298
AlwI GGATC 1 cut(s) 517
Aor13HI TCCGGA 1 cut(s) 268
AoxI GGCC 3 cut(s) 302, 309, 355
ApeKI GCWGC 2 cut(s) 87, 329
AspLEI GCGC 7 cut(s) 56, 58, 68, 87, 149, 334, 492
AspS9I GGNCC 2 cut(s) 71, 356
AsuC2I CCSGG 2 cut(s) 144, 228
AsuHPI GGTGA 2 cut(s) 31, 440
AsuII TTCGAA 1 cut(s) 221
AvaII GGWCC 1 cut(s) 71
AxyI CCTNAGG 1 cut(s) 277
BanI GGYRCC 2 cut(s) 65, 152
BbsI GAAGAC 1 cut(s) 177
Bbv12I GWGCWC 1 cut(s) 81
BbvI GCAGC 2 cut(s) 99, 316
BccI CCATC 2 cut(s) 197, 483
BceAI ACGGC 2 cut(s) 79, 109
BciVI GTATCC 1 cut(s) 276
BcnI CCSGG 2 cut(s) 144, 228
BcoDI GTCTC 2 cut(s) 246, 298
BfoI RGCGCY 1 cut(s) 69
BfuAI ACCTGC 1 cut(s) 140
BfuI GTATCC 1 cut(s) 276
BglII AGATCT 1 cut(s) 370
BisI GCNGC 4 cut(s) 88, 156, 159, 330
BlsI GCNGC 4 cut(s) 89, 157, 160, 331
Bme1390I CCNGG 2 cut(s) 144, 228
Bme18I GGWCC 1 cut(s) 71
BmgBI CACGTC 1 cut(s) 211
BmgT120I GGNCC 2 cut(s) 71, 356
BmiI GGNNCC 3 cut(s) 67, 73, 154
BmrFI CCNGG 2 cut(s) 144, 228
BmsI GCATC 1 cut(s) 382
BpiI GAAGAC 1 cut(s) 177
Bpu14I TTCGAA 1 cut(s) 221
BpuEI CTTGAG 1 cut(s) 65
BpuMI CCSGG 2 cut(s) 144, 228
BsaHI GRCGYC 4 cut(s) 66, 186, 273, 315
BsaWI WCCGGW 1 cut(s) 268
BsaXI ACNNNNNCTCC 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse118I RCCGGY 1 cut(s) 68
Bse1I ACTGG 2 cut(s) 196, 358
Bse21I CCTNAGG 1 cut(s) 277
BseAI TCCGGA 1 cut(s) 268
BseGI GGATG 2 cut(s) 390, 397
BseLI CCNNNNNNNGG 1 cut(s) 149
BseNI ACTGG 2 cut(s) 196, 358
BsePI GCGCGC 1 cut(s) 54
BseXI GCAGC 2 cut(s) 99, 316
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 3 cut(s) 304, 311, 357
BshNI GGYRCC 2 cut(s) 65, 152
BsiHKAI GWGCWC 1 cut(s) 81
BsiSI CCGG 5 cut(s) 69, 144, 162, 227, 269
BslFI GGGAC 2 cut(s) 57, 243
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 2 cut(s) 246, 298
BsmFI GGGAC 2 cut(s) 57, 243
BsmI GAATGC 2 cut(s) 282, 395
BsnI GGCC 3 cut(s) 304, 311, 357
Bsp119I TTCGAA 1 cut(s) 221
Bsp1286I GDGCHC 1 cut(s) 81
Bsp13I TCCGGA 1 cut(s) 268
Bsp143I GATC 2 cut(s) 370, 509
BspACI CCGC 3 cut(s) 156, 159, 418
BspANI GGCC 3 cut(s) 304, 311, 357
BspEI TCCGGA 1 cut(s) 268
BspFNI CGCG 1 cut(s) 56
BspLI GGNNCC 3 cut(s) 67, 73, 154
BspMI ACCTGC 1 cut(s) 140
BspPI GGATC 1 cut(s) 517
BspQI GCTCTTC 1 cut(s) 408
BspT104I TTCGAA 1 cut(s) 221
BspT107I GGYRCC 2 cut(s) 65, 152
BsrBI CCGCTC 1 cut(s) 418
BsrFI RCCGGY 1 cut(s) 68
BsrI ACTGG 2 cut(s) 196, 358
BssAI RCCGGY 1 cut(s) 68
BssHII GCGCGC 1 cut(s) 54
BssMI GATC 2 cut(s) 370, 509
BssNI GRCGYC 4 cut(s) 66, 186, 273, 315
Bst4CI ACNGT 2 cut(s) 43, 505
Bst6I CTCTTC 1 cut(s) 408
BstACI GRCGYC 4 cut(s) 66, 186, 273, 315
BstBI TTCGAA 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 56
BstDEI CTNAG 1 cut(s) 277
BstF5I GGATG 2 cut(s) 390, 397
BstFNI CGCG 1 cut(s) 56
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 7 cut(s) 56, 58, 68, 87, 149, 334, 492
BstKTI GATC 2 cut(s) 373, 512
BstMAI GTCTC 2 cut(s) 246, 298
BstMBI GATC 2 cut(s) 370, 509
BstMWI GCNNNNNNNGC 2 cut(s) 93, 155
BstSCI CCNGG 2 cut(s) 142, 226
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 2 cut(s) 99, 316
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
Bsu36I CCTNAGG 1 cut(s) 277
BsuI GTATCC 1 cut(s) 276
BsuRI GGCC 3 cut(s) 304, 311, 357
BtrI CACGTC 1 cut(s) 211
BtsCI GGATG 2 cut(s) 390, 397
BveI ACCTGC 1 cut(s) 140
Cac8I GCNNGC 1 cut(s) 56
CfoI GCGC 7 cut(s) 56, 58, 68, 87, 149, 334, 492
Cfr10I RCCGGY 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 71, 356
CseI GACGC 3 cut(s) 194, 281, 323
CviAII CATG 2 cut(s) 121, 456
CviJI RGCY 8 cut(s) 90, 226, 262, 304, 311, 357, 405, 460
CviKI_1 RGCY 8 cut(s) 90, 226, 262, 304, 311, 357, 405, 460
DdeI CTNAG 1 cut(s) 277
DinI GGCGCC 1 cut(s) 67
DpnI GATC 2 cut(s) 372, 511
DpnII GATC 2 cut(s) 370, 509
DraI TTTAAA 1 cut(s) 499
EaeI YGGCCR 1 cut(s) 309
Eam1104I CTCTTC 1 cut(s) 408
EarI CTCTTC 1 cut(s) 408
Eco147I AGGCCT 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 327
Eco81I CCTNAGG 1 cut(s) 277
EcoT22I ATGCAT 1 cut(s) 397
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
FaeI CATG 2 cut(s) 124, 459
FaiI YATR 9 cut(s) 113, 122, 308, 349, 351, 410, 457, 463, 488
FaqI GGGAC 2 cut(s) 57, 243
FatI CATG 2 cut(s) 120, 455
FauI CCCGC 1 cut(s) 411
Fnu4HI GCNGC 4 cut(s) 88, 156, 159, 330
FokI GGATG 2 cut(s) 397, 404
Fsp4HI GCNGC 4 cut(s) 88, 156, 159, 330
GlaI GCGC 7 cut(s) 55, 57, 67, 86, 148, 333, 491
GluI GCNGC 4 cut(s) 88, 156, 159, 330
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 3 cut(s) 304, 311, 357
HapII CCGG 5 cut(s) 69, 144, 162, 227, 269
HgaI GACGC 3 cut(s) 194, 281, 323
HhaI GCGC 7 cut(s) 56, 58, 68, 87, 149, 334, 492
Hin1I GRCGYC 4 cut(s) 66, 186, 273, 315
Hin1II CATG 2 cut(s) 124, 459
Hin6I GCGC 7 cut(s) 54, 56, 66, 85, 147, 332, 490
HinP1I GCGC 7 cut(s) 54, 56, 66, 85, 147, 332, 490
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 1 cut(s) 239
HpaII CCGG 5 cut(s) 69, 144, 162, 227, 269
HphI GGTGA 2 cut(s) 31, 440
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 2 cut(s) 269, 374
Hpy8I GTNNAC 1 cut(s) 22
Hpy99I CGWCG 9 cut(s) 47, 65, 101, 179, 182, 185, 188, 215, 317
HpyAV CCTTC 3 cut(s) 229, 374, 382
HpyCH4III ACNGT 2 cut(s) 43, 505
HpyCH4IV ACGT 2 cut(s) 210, 465
HpyCH4V TGCA 1 cut(s) 395
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 155
HpyF3I CTNAG 1 cut(s) 277
HpySE526I ACGT 2 cut(s) 210, 465
Hsp92I GRCGYC 4 cut(s) 66, 186, 273, 315
Hsp92II CATG 2 cut(s) 124, 459
HspAI GCGC 7 cut(s) 54, 56, 66, 85, 147, 332, 490
KasI GGCGCC 1 cut(s) 65
Kpn2I TCCGGA 1 cut(s) 268
Kzo9I GATC 2 cut(s) 370, 509
LguI GCTCTTC 1 cut(s) 408
Lsp1109I GCAGC 2 cut(s) 99, 316
LweI GCATC 1 cut(s) 382
MaeII ACGT 2 cut(s) 210, 465
MalI GATC 2 cut(s) 372, 511
MbiI CCGCTC 1 cut(s) 418
MboI GATC 2 cut(s) 370, 509
MboII GAAGA 5 cut(s) 182, 333, 380, 425, 440
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 1 cut(s) 81
Mly113I GGCGCC 1 cut(s) 66
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 9 cut(s) 18, 21, 36, 40, 158, 208, 328, 345, 369
Mph1103I ATGCAT 1 cut(s) 397
MroI TCCGGA 1 cut(s) 268
MseI TTAA 3 cut(s) 498, 519, 538
MslI CAYNNNNRTG 1 cut(s) 125
MspI CCGG 5 cut(s) 69, 144, 162, 227, 269
MspR9I CCNGG 2 cut(s) 144, 228
Mva1269I GAATGC 2 cut(s) 282, 395
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 93, 155
NarI GGCGCC 1 cut(s) 66
NciI CCSGG 2 cut(s) 144, 228
NdeII GATC 2 cut(s) 370, 509
NlaIII CATG 2 cut(s) 124, 459
NlaIV GGNNCC 3 cut(s) 67, 73, 154
NsiI ATGCAT 1 cut(s) 397
NspV TTCGAA 1 cut(s) 221
PaqCI CACCTGC 1 cut(s) 140
PauI GCGCGC 1 cut(s) 54
PceI AGGCCT 1 cut(s) 304
PciSI GCTCTTC 1 cut(s) 408
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PctI GAATGC 2 cut(s) 282, 395
PkrI GCNGC 4 cut(s) 89, 157, 160, 331
PleI GAGTC 1 cut(s) 247
PluTI GGCGCC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 247
PspN4I GGNNCC 3 cut(s) 67, 73, 154
PspPI GGNCC 2 cut(s) 71, 356
PsuI RGATCY 1 cut(s) 370
PteI GCGCGC 1 cut(s) 54
RseI CAYNNNNRTG 1 cut(s) 125
SapI GCTCTTC 1 cut(s) 408
SaqAI TTAA 3 cut(s) 498, 519, 538
SatI GCNGC 4 cut(s) 88, 156, 159, 330
Sau3AI GATC 2 cut(s) 370, 509
Sau96I GGNCC 2 cut(s) 71, 356
SchI GAGTC 1 cut(s) 248
ScrFI CCNGG 2 cut(s) 144, 228
SduI GDGCHC 1 cut(s) 81
SetI ASST 6 cut(s) 92, 154, 213, 219, 407, 468
SfaNI GCATC 1 cut(s) 382
SfoI GGCGCC 1 cut(s) 67
SfuI TTCGAA 1 cut(s) 221
SinI GGWCC 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
SseBI AGGCCT 1 cut(s) 304
SsiI CCGC 3 cut(s) 156, 159, 418
SspDI GGCGCC 1 cut(s) 65
SspI AATATT 1 cut(s) 136
StuI AGGCCT 1 cut(s) 304
StyD4I CCNGG 2 cut(s) 142, 226
TaaI ACNGT 2 cut(s) 43, 505
TaiI ACGT 2 cut(s) 213, 468
TaqI TCGA 4 cut(s) 60, 213, 221, 451
TaqII GACCGA 1 cut(s) 106
TauI GCSGC 2 cut(s) 158, 161
Tru1I TTAA 3 cut(s) 498, 519, 538
Tru9I TTAA 3 cut(s) 498, 519, 538
TseI GCWGC 2 cut(s) 87, 329
TspDTI ATGAA 3 cut(s) 393, 401, 537
VpaK11BI GGWCC 1 cut(s) 71
Zsp2I ATGCAT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.