Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004079

Physical Location & Seq

Genomic Coordinates Forward (+)

15875342 .. 15876827

Gene Structure 1486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G32890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGAAAAGATAGCTCCGGAGCTCTTCCTCGTCGCCGGTAACCCGGACTCTTTCGTCGTCGACGACCTCCTCGACTTCTCTAACGACGACGGCGAAGTTGACGACGGCTTAAACACTCTTCCCGATTCTTCAACACTCTCCACCGGCACTCTCACCGACAGTTCCAACTCCTCCTCGCTTTTCACCGACGGCACTGGCTTCTCCGACCTATATATTCCGAATGACGATATAGCAGAATTAGAATGGTTATCAAATTTTGTGGAAGAATCATTCGCAGGAGAAGACCAAGACAAGCTTCACTTATTTTCCGGTTTAAAAAACCCTCAAACCACCGGGTCGACCCTGACCCACTTAATTAAACCCGAACCCGAACTTGATCATCAATTCATCGACATCGATGAATCCAACGTCGCCGTTCCTGCCAAGGCCAGAAGCAAGAGATCACGTTCTGCAGCCTCCACGTGGGCTTCCCGTCTTTTATCCTTAGCCGATTCCGACGAAACCAATCCCAAGAAGAAACAACGAAGAGTGAAAGAACAAGACTTCGCCGGAGATATGGACGTGGATTGCGGAGAAAGCGGAGGAGGACGACGTTGTTTGCACTGCGCGACGGAGAAGACGCCGCAATGGAGGACGGGACCTATGGGTCCGAAGACGCTTTGTAACGCTTGCGGAGTGAGGTACAAATCAGGGAGGCTCGTGCCGGAGTATAGACCGGCGTCGAGTCCGACGTTCGTGATGGCGAGGCACTCGAACTCTCACCGGAAAGTGATGGAGCTCCGGCGACAGAAGGAGATGAGAGACGAGCATTTGCTGAGTCAGCTTAGGTGTGAGAATCTACTGATGGATATCAGATCCAACGGTGAAGATTTCTTAATGCATAATAATACTAACCACGTGGCTCCTGATTTTAGACACTTAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1905177 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

308

Amino Acids

34.35

Weight (kDa)

5.1

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	199 - 233	1.4e-14	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32890 AT5G25830
fragaria_vesca	FvH4_2g35450 FvH4_6g32190
malus_domestica	MD08G1113200.v1.1 MD09G1205600.v1.1 MD15G1092500.v1.1 MD17G1185900.v1.1
prunus_persica	Prupe.1G447300_v2.0.a1 Prupe.1G447400_v2.0.a1 Prupe.3G060900_v2.0.a1
pyrus_communis	pycom08g09390 pycom17g19520
rosa_chinensis	RchiOBHm_Chr2g0140091
rosa_laevigata	RLG00000010798 RLG00000019848
rosa_multiflora	Rmu_co8403039.1_g000001 Rmu_sc0002971.1_g000022 Rmu_sc0003244.1_g000030
rosa_roxburghii	Rroxscaffold_2G00105070 Rroxscaffold_7G00161780
rosa_rugosa	Rorug02G0361000.1 Rorug06G0349300
rosa_samantha	Rh2AG411700 Rh2BG422000 Rh2CG397800 Rh2DG431400 Rh6AG461600 Rh6BG439500 Rh6CG475600 Rh6DG462400
rosa_wichuraiana	Rw2G033730 Rw6G040230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	53, 645
AccI	GTMKAC	2 cut(s)	60, 338
AccII	CGCG	1 cut(s)	608
AccIII	TCCGGA	1 cut(s)	16
AciI	CCGC	4 cut(s)	570, 579, 623, 672
AclWI	GGATC	1 cut(s)	849
AcsI	RAATTY	1 cut(s)	253
AcvI	CACGTG	2 cut(s)	462, 898
AcyI	GRCGYC	2 cut(s)	620, 719
AfaI	GTAC	1 cut(s)	683
AfiI	CCNNNNNNNGG	1 cut(s)	462
AgsI	TTSAA	1 cut(s)	132
AjiI	CACGTC	1 cut(s)	562
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
AluBI	AGCT	5 cut(s)	14, 22, 295, 778, 823
AluI	AGCT	5 cut(s)	14, 22, 295, 778, 823
Alw21I	GWGCWC	2 cut(s)	24, 780
Alw26I	GTCTC	1 cut(s)	795
AlwI	GGATC	1 cut(s)	849
Aor13HI	TCCGGA	1 cut(s)	16
AoxI	GGCC	1 cut(s)	426
ApeKI	GCWGC	1 cut(s)	452
ApoI	RAATTY	1 cut(s)	253
AspLEI	GCGC	1 cut(s)	608
AspS9I	GGNCC	2 cut(s)	638, 647
AsuC2I	CCSGG	2 cut(s)	44, 334
AsuHPI	GGTGA	4 cut(s)	145, 175, 752, 875
AvaII	GGWCC	2 cut(s)	638, 647
BanII	GRGCYC	2 cut(s)	24, 780
BauI	CACGAG	1 cut(s)	698
BbrPI	CACGTG	2 cut(s)	462, 898
BbsI	GAAGAC	3 cut(s)	288, 623, 659
Bbv12I	GWGCWC	2 cut(s)	24, 780
BbvI	GCAGC	1 cut(s)	464
BccI	CCATC	3 cut(s)	733, 766, 838
BceAI	ACGGC	4 cut(s)	106, 121, 205, 398
BclI	TGATCA	1 cut(s)	376
BcnI	CCSGG	2 cut(s)	44, 334
BcoDI	GTCTC	1 cut(s)	795
BfaI	CTAG	1 cut(s)	925
BfmI	CTRYAG	1 cut(s)	450
BisI	GCNGC	2 cut(s)	453, 623
BlsI	GCNGC	2 cut(s)	454, 624
Bme1390I	CCNGG	2 cut(s)	44, 334
Bme18I	GGWCC	2 cut(s)	638, 647
BmgBI	CACGTC	1 cut(s)	562
BmgT120I	GGNCC	2 cut(s)	638, 647
BmiI	GGNNCC	3 cut(s)	639, 648, 903
BmrFI	CCNGG	2 cut(s)	44, 334
BoxI	GACNNNNGTC	1 cut(s)	718
BpiI	GAAGAC	3 cut(s)	288, 623, 659
Bpu10I	CCTNAGC	2 cut(s)	484, 824
BpuMI	CCSGG	2 cut(s)	44, 334
Bsa29I	ATCGAT	1 cut(s)	396
BsaAI	YACGTR	2 cut(s)	462, 898
BsaBI	GATNNNNATC	1 cut(s)	848
BsaHI	GRCGYC	2 cut(s)	620, 719
BsaJI	CCNNGG	1 cut(s)	423
BsaWI	WCCGGW	3 cut(s)	16, 308, 762
Bsc4I	CCNNNNNNNGG	1 cut(s)	462
Bse118I	RCCGGY	3 cut(s)	35, 143, 715
Bse1I	ACTGG	1 cut(s)	199
Bse3DI	GCAATG	1 cut(s)	632
Bse8I	GATNNNNATC	1 cut(s)	848
BseAI	TCCGGA	1 cut(s)	16
BseCI	ATCGAT	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	423
BseJI	GATNNNNATC	1 cut(s)	848
BseLI	CCNNNNNNNGG	1 cut(s)	462
BseMI	GCAATG	1 cut(s)	632
BseMII	CTCAG	1 cut(s)	806
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	4 cut(s)	59, 160, 163, 597
BseXI	GCAGC	1 cut(s)	464
Bsh1236I	CGCG	1 cut(s)	608
BshFI	GGCC	1 cut(s)	428
BshVI	ATCGAT	1 cut(s)	396
BsiHKAI	GWGCWC	2 cut(s)	24, 780
BslFI	GGGAC	1 cut(s)	651
BslI	CCNNNNNNNGG	1 cut(s)	462
BsmAI	GTCTC	1 cut(s)	795
BsmBI	CGTCTC	1 cut(s)	795
BsmFI	GGGAC	1 cut(s)	651
BsnI	GGCC	1 cut(s)	428
Bsp1286I	GDGCHC	2 cut(s)	24, 780
Bsp13I	TCCGGA	1 cut(s)	16
Bsp143I	GATC	3 cut(s)	376, 440, 854
BspACI	CCGC	4 cut(s)	570, 579, 623, 672
BspANI	GGCC	1 cut(s)	428
BspCNI	CTCAG	1 cut(s)	807
BspDI	ATCGAT	1 cut(s)	396
BspEI	TCCGGA	1 cut(s)	16
BspFNI	CGCG	1 cut(s)	608
BspLI	GGNNCC	3 cut(s)	639, 648, 903
BspMAI	CTGCAG	1 cut(s)	454
BspPI	GGATC	1 cut(s)	849
BspQI	GCTCTTC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	632
BsrFI	RCCGGY	3 cut(s)	35, 143, 715
BsrI	ACTGG	1 cut(s)	199
BssAI	RCCGGY	3 cut(s)	35, 143, 715
BssECI	CCNNGG	1 cut(s)	423
BssMI	GATC	3 cut(s)	376, 440, 854
BssNI	GRCGYC	2 cut(s)	620, 719
BssSI	CACGAG	1 cut(s)	698
BssT1I	CCWWGG	1 cut(s)	423
Bst2BI	CACGAG	1 cut(s)	698
Bst4CI	ACNGT	2 cut(s)	161, 863
Bst6I	CTCTTC	3 cut(s)	29, 123, 520
BstACI	GRCGYC	2 cut(s)	620, 719
BstBAI	YACGTR	2 cut(s)	462, 898
BstC8I	GCNNGC	1 cut(s)	670
BstDEI	CTNAG	3 cut(s)	484, 815, 824
BstEII	GGTNACC	1 cut(s)	38
BstFNI	CGCG	1 cut(s)	608
BstHHI	GCGC	1 cut(s)	608
BstKTI	GATC	3 cut(s)	379, 443, 857
BstMAI	GTCTC	1 cut(s)	795
BstMBI	GATC	3 cut(s)	376, 440, 854
BstMWI	GCNNNNNNNGC	3 cut(s)	419, 576, 820
BstPAI	GACNNNNGTC	1 cut(s)	718
BstPI	GGTNACC	1 cut(s)	38
BstSCI	CCNGG	2 cut(s)	42, 332
BstSFI	CTRYAG	1 cut(s)	450
BstUI	CGCG	1 cut(s)	608
BstV1I	GCAGC	1 cut(s)	464
BstV2I	GAAGAC	3 cut(s)	288, 623, 659
BstX2I	RGATCY	1 cut(s)	854
BstYI	RGATCY	1 cut(s)	854
Bsu15I	ATCGAT	1 cut(s)	396
BsuRI	GGCC	1 cut(s)	428
BsuTUI	ATCGAT	1 cut(s)	396
BtrI	CACGTC	1 cut(s)	562
BtsI	GCAGTG	1 cut(s)	601
BtsIMutI	CAGTG	2 cut(s)	192, 601
Cac8I	GCNNGC	1 cut(s)	670
CfoI	GCGC	1 cut(s)	608
Cfr10I	RCCGGY	3 cut(s)	35, 143, 715
Cfr13I	GGNCC	2 cut(s)	638, 647
ClaI	ATCGAT	1 cut(s)	396
CseI	GACGC	3 cut(s)	628, 664, 708
Csp6I	GTAC	1 cut(s)	682
CspCI	CAANNNNNGTGG	2 cut(s)	240, 275
CviQI	GTAC	1 cut(s)	682
DdeI	CTNAG	3 cut(s)	484, 815, 824
DpnI	GATC	3 cut(s)	378, 442, 856
DpnII	GATC	3 cut(s)	376, 440, 854
DraI	TTTAAA	1 cut(s)	315
DrdI	GACNNNNNNGTC	2 cut(s)	53, 645
DseDI	GACNNNNNNGTC	2 cut(s)	53, 645
Eam1104I	CTCTTC	3 cut(s)	29, 123, 520
EarI	CTCTTC	3 cut(s)	29, 123, 520
Ecl136II	GAGCTC	2 cut(s)	22, 778
Eco130I	CCWWGG	1 cut(s)	423
Eco24I	GRGCYC	2 cut(s)	24, 780
Eco32I	GATATC	1 cut(s)	850
Eco47I	GGWCC	2 cut(s)	638, 647
Eco53kI	GAGCTC	2 cut(s)	22, 778
Eco72I	CACGTG	2 cut(s)	462, 898
Eco91I	GGTNACC	1 cut(s)	38
EcoICRI	GAGCTC	2 cut(s)	22, 778
EcoO109I	RGGNCCY	1 cut(s)	638
EcoO65I	GGTNACC	1 cut(s)	38
EcoRV	GATATC	1 cut(s)	850
EcoT14I	CCWWGG	1 cut(s)	423
EcoT22I	ATGCAT	1 cut(s)	882
EcoT38I	GRGCYC	2 cut(s)	24, 780
ErhI	CCWWGG	1 cut(s)	423
Esp3I	CGTCTC	1 cut(s)	795
FaiI	YATR	7 cut(s)	211, 213, 230, 557, 644, 711, 882
FalI	AAGNNNNNCTT	4 cut(s)	279, 311, 284, 316
FaqI	GGGAC	1 cut(s)	651
FbaI	TGATCA	1 cut(s)	376
FblI	GTMKAC	2 cut(s)	60, 338
Fnu4HI	GCNGC	2 cut(s)	453, 623
FriOI	GRGCYC	2 cut(s)	24, 780
Fsp4HI	GCNGC	2 cut(s)	453, 623
FspBI	CTAG	1 cut(s)	925
GlaI	GCGC	1 cut(s)	607
GluI	GCNGC	2 cut(s)	453, 623
HaeIII	GGCC	1 cut(s)	428
HgaI	GACGC	3 cut(s)	628, 664, 708
HhaI	GCGC	1 cut(s)	608
Hin1I	GRCGYC	2 cut(s)	620, 719
Hin6I	GCGC	1 cut(s)	606
HinP1I	GCGC	1 cut(s)	606
HincII	GTYRAC	3 cut(s)	61, 100, 339
HindII	GTYRAC	3 cut(s)	61, 100, 339
HindIII	AAGCTT	1 cut(s)	293
HinfI	GANTC	8 cut(s)	47, 125, 266, 401, 491, 724, 817, 835
HphI	GGTGA	4 cut(s)	145, 175, 752, 875
Hpy166II	GTNNAC	3 cut(s)	61, 100, 339
Hpy188I	TCNGA	6 cut(s)	205, 219, 496, 651, 729, 854
Hpy188III	TCNNGA	4 cut(s)	17, 122, 736, 905
Hpy8I	GTNNAC	3 cut(s)	61, 100, 339
HpyAV	CCTTC	1 cut(s)	784
HpyCH4III	ACNGT	2 cut(s)	161, 863
HpyCH4IV	ACGT	7 cut(s)	408, 445, 461, 561, 592, 731, 897
HpyCH4V	TGCA	3 cut(s)	452, 601, 880
HpyF10VI	GCNNNNNNNGC	3 cut(s)	419, 576, 820
HpyF3I	CTNAG	3 cut(s)	484, 815, 824
HpySE526I	ACGT	7 cut(s)	408, 445, 461, 561, 592, 731, 897
Hsp92I	GRCGYC	2 cut(s)	620, 719
HspAI	GCGC	1 cut(s)	606
Kpn2I	TCCGGA	1 cut(s)	16
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	3 cut(s)	376, 440, 854
LguI	GCTCTTC	1 cut(s)	29
LmnI	GCTCC	5 cut(s)	19, 19, 775, 783, 907
Lsp1109I	GCAGC	1 cut(s)	464
MaeI	CTAG	1 cut(s)	925
MaeII	ACGT	7 cut(s)	408, 445, 461, 561, 592, 731, 897
MaeIII	GTNAC	2 cut(s)	38, 662
MalI	GATC	3 cut(s)	378, 442, 856
MboI	GATC	3 cut(s)	376, 440, 854
MflI	RGATCY	1 cut(s)	854
MhlI	GDGCHC	2 cut(s)	24, 780
MluCI	AATT	4 cut(s)	236, 253, 354, 383
MlyI	GAGTC	3 cut(s)	41, 733, 826
MmeI	TCCRAC	6 cut(s)	189, 228, 429, 519, 752, 882
Mph1103I	ATGCAT	1 cut(s)	882
MroI	TCCGGA	1 cut(s)	16
MseI	TTAA	6 cut(s)	110, 314, 353, 357, 875, 920
MspR9I	CCNGG	2 cut(s)	44, 334
MvnI	CGCG	1 cut(s)	608
MwoI	GCNNNNNNNGC	3 cut(s)	419, 576, 820
NciI	CCSGG	2 cut(s)	44, 334
NdeII	GATC	3 cut(s)	376, 440, 854
NlaIV	GGNNCC	3 cut(s)	639, 648, 903
NsiI	ATGCAT	1 cut(s)	882
PacI	TTAATTAA	1 cut(s)	357
PciSI	GCTCTTC	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	4 cut(s)	60, 69, 90, 728
PfeI	GAWTC	5 cut(s)	125, 266, 401, 491, 835
PkrI	GCNGC	2 cut(s)	454, 624
PleI	GAGTC	3 cut(s)	41, 732, 825
PmaCI	CACGTG	2 cut(s)	462, 898
PmlI	CACGTG	2 cut(s)	462, 898
PpsI	GAGTC	3 cut(s)	41, 732, 825
Ppu21I	YACGTR	2 cut(s)	462, 898
PpuMI	RGGWCCY	1 cut(s)	638
PshAI	GACNNNNGTC	1 cut(s)	718
Psp124BI	GAGCTC	2 cut(s)	24, 780
Psp5II	RGGWCCY	1 cut(s)	638
PspCI	CACGTG	2 cut(s)	462, 898
PspEI	GGTNACC	1 cut(s)	38
PspN4I	GGNNCC	3 cut(s)	639, 648, 903
PspPI	GGNCC	2 cut(s)	638, 647
PspPPI	RGGWCCY	1 cut(s)	638
PstI	CTGCAG	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	854
RsaI	GTAC	1 cut(s)	683
RsaNI	GTAC	1 cut(s)	682
SacI	GAGCTC	2 cut(s)	24, 780
SalI	GTCGAC	2 cut(s)	59, 337
SapI	GCTCTTC	1 cut(s)	29
SaqAI	TTAA	6 cut(s)	110, 314, 353, 357, 875, 920
SatI	GCNGC	2 cut(s)	453, 623
Sau3AI	GATC	3 cut(s)	376, 440, 854
Sau96I	GGNCC	2 cut(s)	638, 647
SchI	GAGTC	3 cut(s)	41, 733, 826
ScrFI	CCNGG	2 cut(s)	44, 334
SduI	GDGCHC	2 cut(s)	24, 780
SfcI	CTRYAG	1 cut(s)	450
SgrDI	CGTCGACG	1 cut(s)	59
SinI	GGWCC	2 cut(s)	638, 647
Sse9I	AATT	4 cut(s)	236, 253, 354, 383
SsiI	CCGC	4 cut(s)	570, 579, 623, 672
SspMI	CTAG	1 cut(s)	925
SstI	GAGCTC	2 cut(s)	24, 780
StyD4I	CCNGG	2 cut(s)	42, 332
StyI	CCWWGG	1 cut(s)	423
TaaI	ACNGT	2 cut(s)	161, 863
TaiI	ACGT	7 cut(s)	411, 448, 464, 564, 595, 734, 900
TaqI	TCGA	7 cut(s)	60, 72, 338, 390, 396, 722, 752
TasI	AATT	4 cut(s)	236, 253, 354, 383
TauI	GCSGC	1 cut(s)	625
TfiI	GAWTC	5 cut(s)	125, 266, 401, 491, 835
Tru1I	TTAA	6 cut(s)	110, 314, 353, 357, 875, 920
Tru9I	TTAA	6 cut(s)	110, 314, 353, 357, 875, 920
TscAI	CASTG	2 cut(s)	199, 608
TseI	GCWGC	1 cut(s)	452
TspDTI	ATGAA	2 cut(s)	376, 414
TspGWI	ACGGA	1 cut(s)	626
TspRI	CASTG	2 cut(s)	199, 608
VpaK11BI	GGWCC	2 cut(s)	638, 647
XapI	RAATTY	1 cut(s)	253
XmiI	GTMKAC	2 cut(s)	60, 338
XspI	CTAG	1 cut(s)	925
Zsp2I	ATGCAT	1 cut(s)	882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.