Prupe.1G447300_v2.0.a1

Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
37818331 .. 37820281
1951 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G447300.1

Sequence Viewer

Length: 1155 bp
ATGGAAGCTCCCGAGTATTTTCAGAACAGTTTCTGCCCACAATTCACACCGGAAAAGCGCCACTCTTTCGACAATAATAACAATAAGGCCACCAATGGTGGTGGTGGTGGCGGGGACCATTTCATGGTGGAGGACCTTCTCGACTTTTCCAATGATGACGCGGTGATAACCGATGGTGGTGCTACTTTTGATAACGCCACCGGAAACTCCACTGACTCTTCCACCATCACCGTCATTGACAGCTGCAATTCTTCTTCCTTATCGGGCTCCGAACCCAATGTCATCCCCGATATCGGGTCCAGAAATATCACCGAAGGCCCATTCTCTAGTGACCTCTGCGTCCCGTACGACGATTTAGCTGAGCTCGAATGGCTTTCGAATTTCGTGGAGGAGTCGTTTTCCAGTGAGGACATGCAGAAGCTGCAGCTGATATCAGGAATGAAAGCTCGACCCGACGAGGCAGCTTCTGAGACCCGACAATTCCAACCCGAACCCAACCGAAACGACAACGCTCACAACACCACCACCAACAACCCGATATTCAACCCGGATGTTTCGGTACCCGCCAAGGCCAGAAGCAAAAGGTCCCGGGGCGCCCCATGCAACTGGACATCTCGCCTCCTCCTCCTTTCCCAGCCGACCTCATCCTCGGAGCAATCCGACGTCGTTTCAGGTGCGCCGGAGTCTCCGTTACCGCCACCGTCAACCACTGGAAAGAAAACAGTTAAGTCGGTGCCGAAGAAGAAGGAAAGCCCAGAGGGTCTAGGAGGGGGGCCCGGGGACGGCCGGAAGTGCCTGCATTGTGCGACGGACAAGACGCCGCAATGGCGAACGGGGCCTCTGGGTCCAAAGACGCTGTGCAATGCGTGTGGGGTCCGATACAAGTCAGGTCGGCTCGTACCCGAGTATCGACCCGCCTCAAGCCCGACGTTCGTACTGACGAAGCACTCCAACTCGCACCGAAAGGTTTTGGAGCTTCGGCGCCAAAAGGAGATGGTGAGGGCACAACAGCAGTTTATTCACCAAGTACCGCCACAACAGCATCACCACCACCATCACCACCATCACCATCAGAACATGGTTTTCGATGTATCCAATGGTGGAGATTACTTGATTCACCAACACATGGGGCCTGACTTCCGGCAGCTGATCTAG

Protein Analysis

385

Amino Acids

42.24

Weight (kDa)

6.25

Isoelectric Point (pI)

55.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 338
AatII GACGTC 1 cut(s) 666
Acc65I GGTACC 1 cut(s) 559
AccB1I GGYRCC 4 cut(s) 559, 593, 733, 981
AccB7I CCANNNNNTGG 2 cut(s) 124, 1126
AccII CGCG 1 cut(s) 161
AciI CCGC 7 cut(s) 111, 161, 564, 695, 821, 915, 1031
AcoI YGGCCR 1 cut(s) 784
AcsI RAATTY 1 cut(s) 379
AcyI GRCGYC 4 cut(s) 594, 663, 818, 982
AfaI GTAC 5 cut(s) 347, 561, 900, 936, 1029
AfiI CCNNNNNNNGG 5 cut(s) 124, 293, 294, 782, 1126
AgsI TTSAA 1 cut(s) 544
Alw21I GWGCWC 1 cut(s) 366
Alw26I GTCTC 2 cut(s) 464, 690
AlwNI CAGNNNCTG 3 cut(s) 33, 421, 467
Ama87I CYCGRG 4 cut(s) 11, 588, 776, 902
AoxI GGCC 7 cut(s) 87, 316, 570, 773, 784, 836, 1130
ApaI GGGCCC 1 cut(s) 777
ApeKI GCWGC 5 cut(s) 243, 421, 424, 461, 1144
ApoI RAATTY 1 cut(s) 379
ArsI GACNNNNNNTTYG 2 cut(s) 264, 296
Asp700I GAANNNNTTC 1 cut(s) 29
Asp718I GGTACC 1 cut(s) 559
AspLEI GCGC 4 cut(s) 60, 596, 679, 984
AsuC2I CCSGG 5 cut(s) 548, 589, 590, 777, 778
AsuHPI GGTGA 9 cut(s) 175, 220, 301, 1009, 1013, 1037, 1049, 1058, 1109
AsuII TTCGAA 1 cut(s) 377
AvaI CYCGRG 4 cut(s) 11, 588, 776, 902
AvaII GGWCC 6 cut(s) 115, 133, 297, 585, 845, 874
BaeGI GKGCMC 2 cut(s) 777, 1006
BaeI ACNNNNGTAYC 2 cut(s) 890, 923
BanI GGYRCC 4 cut(s) 559, 593, 733, 981
BanII GRGCYC 3 cut(s) 269, 366, 777
Bbv12I GWGCWC 1 cut(s) 366
BbvI GCAGC 4 cut(s) 230, 408, 436, 473
BccI CCATC 6 cut(s) 167, 233, 988, 1062, 1071, 1077
BceAI ACGGC 1 cut(s) 799
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BciVI GTATCC 1 cut(s) 1102
BcnI CCSGG 5 cut(s) 548, 589, 590, 777, 778
BcoDI GTCTC 2 cut(s) 464, 690
BfaI CTAG 3 cut(s) 327, 764, 1153
BfmI CTRYAG 1 cut(s) 422
BfoI RGCGCY 3 cut(s) 61, 597, 985
BfuI GTATCC 1 cut(s) 1102
BglI GCCNNNNNGGC 1 cut(s) 826
BisI GCNGC 6 cut(s) 244, 422, 425, 462, 821, 1145
BlpI GCTNAGC 1 cut(s) 360
BlsI GCNGC 6 cut(s) 245, 423, 426, 463, 822, 1146
Bme1390I CCNGG 5 cut(s) 548, 589, 590, 777, 778
Bme18I GGWCC 6 cut(s) 115, 133, 297, 585, 845, 874
BmeT110I CYCGRG 4 cut(s) 11, 588, 776, 902
BmrFI CCNGG 5 cut(s) 548, 589, 590, 777, 778
BmsI GCATC 1 cut(s) 1051
Bpu1102I GCTNAGC 1 cut(s) 360
Bpu14I TTCGAA 1 cut(s) 377
BpuEI CTTGAG 1 cut(s) 904
BpuMI CCSGG 5 cut(s) 548, 589, 590, 777, 778
BsaHI GRCGYC 4 cut(s) 594, 663, 818, 982
BsaI GGTCTC 1 cut(s) 464
BsaJI CCNNGG 6 cut(s) 567, 588, 589, 648, 776, 777
BsaWI WCCGGW 2 cut(s) 49, 200
BsaXI ACNNNNNCTCC 4 cut(s) 380, 410, 674, 704
Bsc4I CCNNNNNNNGG 5 cut(s) 124, 293, 294, 782, 1126
Bse1I ACTGG 3 cut(s) 402, 611, 715
Bse3DI GCAATG 2 cut(s) 830, 868
BseDI CCNNGG 6 cut(s) 567, 588, 589, 648, 776, 777
BseGI GGATG 3 cut(s) 282, 556, 644
BseLI CCNNNNNNNGG 5 cut(s) 124, 293, 294, 782, 1126
BseMI GCAATG 2 cut(s) 830, 868
BseMII CTCAG 2 cut(s) 351, 459
BseNI ACTGG 3 cut(s) 402, 611, 715
BseRI GAGGAG 3 cut(s) 404, 611, 614
BseSI GKGCMC 2 cut(s) 777, 1006
BseX3I CGGCCG 1 cut(s) 784
BseXI GCAGC 4 cut(s) 230, 408, 436, 473
BseYI CCCAGC 1 cut(s) 633
Bsh1236I CGCG 1 cut(s) 161
Bsh1285I CGRYCG 1 cut(s) 787
BshFI GGCC 7 cut(s) 89, 318, 572, 775, 786, 838, 1132
BshNI GGYRCC 4 cut(s) 559, 593, 733, 981
BsiEI CGRYCG 1 cut(s) 787
BsiHKAI GWGCWC 1 cut(s) 366
BsiHKCI CYCGRG 4 cut(s) 11, 588, 776, 902
BsiSI CCGG 8 cut(s) 50, 201, 548, 589, 680, 777, 787, 1141
BsiWI CGTACG 1 cut(s) 345
BslFI GGGAC 4 cut(s) 128, 326, 571, 794
BslI CCNNNNNNNGG 5 cut(s) 124, 293, 294, 782, 1126
BsmAI GTCTC 2 cut(s) 464, 690
BsmFI GGGAC 4 cut(s) 128, 326, 571, 794
BsnI GGCC 7 cut(s) 89, 318, 572, 775, 786, 838, 1132
Bso31I GGTCTC 1 cut(s) 464
BsoBI CYCGRG 4 cut(s) 11, 588, 776, 902
Bsp119I TTCGAA 1 cut(s) 377
Bsp120I GGGCCC 1 cut(s) 773
Bsp1286I GDGCHC 4 cut(s) 269, 366, 777, 1006
Bsp143I GATC 1 cut(s) 1149
Bsp1720I GCTNAGC 1 cut(s) 360
BspACI CCGC 7 cut(s) 111, 161, 564, 695, 821, 915, 1031
BspANI GGCC 7 cut(s) 89, 318, 572, 775, 786, 838, 1132
BspCNI CTCAG 2 cut(s) 352, 460
BspFNI CGCG 1 cut(s) 161
BspMAI CTGCAG 1 cut(s) 426
BspT104I TTCGAA 1 cut(s) 377
BspT107I GGYRCC 4 cut(s) 559, 593, 733, 981
BspTNI GGTCTC 1 cut(s) 464
BsrDI GCAATG 2 cut(s) 830, 868
BsrI ACTGG 3 cut(s) 402, 611, 715
BssECI CCNNGG 6 cut(s) 567, 588, 589, 648, 776, 777
BssMI GATC 1 cut(s) 1149
BssNI GRCGYC 4 cut(s) 594, 663, 818, 982
BssT1I CCWWGG 1 cut(s) 567
Bst4CI ACNGT 4 cut(s) 29, 232, 702, 724
Bst6I CTCTTC 1 cut(s) 223
BstACI GRCGYC 4 cut(s) 594, 663, 818, 982
BstAPI GCANNNNNTGC 1 cut(s) 421
BstBI TTCGAA 1 cut(s) 377
BstC8I GCNNGC 1 cut(s) 797
BstDEI CTNAG 2 cut(s) 360, 468
BstF5I GGATG 3 cut(s) 282, 556, 644
BstFNI CGCG 1 cut(s) 161
BstH2I RGCGCY 3 cut(s) 61, 597, 985
BstHHI GCGC 4 cut(s) 60, 596, 679, 984
BstKTI GATC 1 cut(s) 1152
BstMAI GTCTC 2 cut(s) 464, 690
BstMBI GATC 1 cut(s) 1149
BstMCI CGRYCG 1 cut(s) 787
BstMWI GCNNNNNNNGC 7 cut(s) 370, 421, 600, 792, 826, 835, 1039
BstNSI RCATGY 1 cut(s) 415
BstSCI CCNGG 5 cut(s) 546, 587, 588, 775, 776
BstSFI CTRYAG 1 cut(s) 422
BstSLI GKGCMC 2 cut(s) 777, 1006
BstUI CGCG 1 cut(s) 161
BstV1I GCAGC 4 cut(s) 230, 408, 436, 473
BstXI CCANNNNNNTGG 1 cut(s) 606
BstZI CGGCCG 1 cut(s) 784
BsuI GTATCC 1 cut(s) 1102
BsuRI GGCC 7 cut(s) 89, 318, 572, 775, 786, 838, 1132
BtsCI GGATG 3 cut(s) 282, 556, 644
BtsIMutI CAGTG 3 cut(s) 210, 409, 708
Cac8I GCNNGC 1 cut(s) 797
CaiI CAGNNNCTG 3 cut(s) 33, 421, 467
CfoI GCGC 4 cut(s) 60, 596, 679, 984
Cfr9I CCCGGG 2 cut(s) 588, 776
CseI GACGC 4 cut(s) 167, 328, 826, 862
Csp6I GTAC 5 cut(s) 346, 560, 899, 935, 1028
CspCI CAANNNNNGTGG 4 cut(s) 82, 117, 850, 885
CviAII CATG 5 cut(s) 124, 412, 600, 1078, 1126
CviQI GTAC 5 cut(s) 346, 560, 899, 935, 1028
DdeI CTNAG 2 cut(s) 360, 468
DinI GGCGCC 2 cut(s) 595, 983
DpnI GATC 1 cut(s) 1151
DpnII GATC 1 cut(s) 1149
DrdI GACNNNNNNGTC 1 cut(s) 338
DseDI GACNNNNNNGTC 1 cut(s) 338
EaeI YGGCCR 1 cut(s) 784
EagI CGGCCG 1 cut(s) 784
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
Ecl136II GAGCTC 1 cut(s) 364
EclXI CGGCCG 1 cut(s) 784
Eco130I CCWWGG 1 cut(s) 567
Eco24I GRGCYC 3 cut(s) 269, 366, 777
Eco31I GGTCTC 1 cut(s) 464
Eco32I GATATC 2 cut(s) 292, 432
Eco47I GGWCC 6 cut(s) 115, 133, 297, 585, 845, 874
Eco52I CGGCCG 1 cut(s) 784
Eco53kI GAGCTC 1 cut(s) 364
Eco88I CYCGRG 4 cut(s) 11, 588, 776, 902
EcoICRI GAGCTC 1 cut(s) 364
EcoO109I RGGNCCY 5 cut(s) 133, 585, 773, 836, 1130
EcoRV GATATC 2 cut(s) 292, 432
EcoT14I CCWWGG 1 cut(s) 567
EcoT38I GRGCYC 3 cut(s) 269, 366, 777
EgeI GGCGCC 2 cut(s) 595, 983
EheI GGCGCC 2 cut(s) 595, 983
ErhI CCWWGG 1 cut(s) 567
FaeI CATG 5 cut(s) 127, 415, 603, 1081, 1129
FaiI YATR 5 cut(s) 125, 413, 601, 1079, 1127
FaqI GGGAC 4 cut(s) 128, 326, 571, 794
FatI CATG 5 cut(s) 123, 411, 599, 1077, 1125
FauI CCCGC 3 cut(s) 104, 571, 922
Fnu4HI GCNGC 6 cut(s) 244, 422, 425, 462, 821, 1145
FokI GGATG 3 cut(s) 269, 563, 631
FriOI GRGCYC 3 cut(s) 269, 366, 777
Fsp4HI GCNGC 6 cut(s) 244, 422, 425, 462, 821, 1145
FspBI CTAG 3 cut(s) 327, 764, 1153
GlaI GCGC 4 cut(s) 59, 595, 678, 983
GluI GCNGC 6 cut(s) 244, 422, 425, 462, 821, 1145
GsaI CCCAGC 1 cut(s) 637
HaeII RGCGCY 3 cut(s) 61, 597, 985
HaeIII GGCC 7 cut(s) 89, 318, 572, 775, 786, 838, 1132
HapII CCGG 8 cut(s) 50, 201, 548, 589, 680, 777, 787, 1141
HgaI GACGC 4 cut(s) 167, 328, 826, 862
HhaI GCGC 4 cut(s) 60, 596, 679, 984
Hin1I GRCGYC 4 cut(s) 594, 663, 818, 982
Hin1II CATG 5 cut(s) 127, 415, 603, 1081, 1129
Hin6I GCGC 4 cut(s) 58, 594, 677, 982
HinP1I GCGC 4 cut(s) 58, 594, 677, 982
HincII GTYRAC 1 cut(s) 705
HindII GTYRAC 1 cut(s) 705
HinfI GANTC 4 cut(s) 215, 392, 683, 1114
HpaII CCGG 8 cut(s) 50, 201, 548, 589, 680, 777, 787, 1141
HphI GGTGA 9 cut(s) 175, 220, 301, 1009, 1013, 1037, 1049, 1058, 1109
Hpy166II GTNNAC 1 cut(s) 705
Hpy188I TCNGA 7 cut(s) 24, 271, 469, 652, 661, 878, 1074
Hpy188III TCNNGA 4 cut(s) 11, 140, 300, 435
Hpy8I GTNNAC 1 cut(s) 705
Hpy99I CGWCG 6 cut(s) 353, 458, 665, 668, 811, 931
HpyAV CCTTC 3 cut(s) 146, 308, 739
HpyCH4III ACNGT 4 cut(s) 29, 232, 702, 724
HpyCH4IV ACGT 2 cut(s) 663, 929
HpyCH4V TGCA 6 cut(s) 246, 415, 424, 603, 799, 861
HpyF10VI GCNNNNNNNGC 7 cut(s) 370, 421, 600, 792, 826, 835, 1039
HpyF3I CTNAG 2 cut(s) 360, 468
HpySE526I ACGT 2 cut(s) 663, 929
Hsp92I GRCGYC 4 cut(s) 594, 663, 818, 982
Hsp92II CATG 5 cut(s) 127, 415, 603, 1081, 1129
HspAI GCGC 4 cut(s) 58, 594, 677, 982
KasI GGCGCC 2 cut(s) 593, 981
KpnI GGTACC 1 cut(s) 563
Kzo9I GATC 1 cut(s) 1149
LmnI GCTCC 4 cut(s) 13, 272, 652, 973
Lsp1109I GCAGC 4 cut(s) 230, 408, 436, 473
LweI GCATC 1 cut(s) 1051
MaeI CTAG 3 cut(s) 327, 764, 1153
MaeII ACGT 2 cut(s) 663, 929
MaeIII GTNAC 2 cut(s) 329, 690
MalI GATC 1 cut(s) 1151
MboI GATC 1 cut(s) 1149
MboII GAAGA 5 cut(s) 210, 243, 246, 751, 754
MhlI GDGCHC 4 cut(s) 269, 366, 777, 1006
MluCI AATT 4 cut(s) 41, 247, 379, 479
Mly113I GGCGCC 2 cut(s) 594, 982
MlyI GAGTC 3 cut(s) 209, 401, 692
MmeI TCCRAC 3 cut(s) 508, 684, 975
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 1 cut(s) 726
MspA1I CMGCKG 3 cut(s) 243, 427, 1147
MspI CCGG 8 cut(s) 50, 201, 548, 589, 680, 777, 787, 1141
MspR9I CCNGG 5 cut(s) 548, 589, 590, 777, 778
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 7 cut(s) 370, 421, 600, 792, 826, 835, 1039
NarI GGCGCC 2 cut(s) 594, 982
NciI CCSGG 5 cut(s) 548, 589, 590, 777, 778
NdeII GATC 1 cut(s) 1149
NlaIII CATG 5 cut(s) 127, 415, 603, 1081, 1129
NmuCI GTSAC 1 cut(s) 329
NspI RCATGY 1 cut(s) 415
NspV TTCGAA 1 cut(s) 377
PdmI GAANNNNTTC 1 cut(s) 29
PfeI GAWTC 1 cut(s) 1114
Pfl23II CGTACG 1 cut(s) 345
PflMI CCANNNNNTGG 2 cut(s) 124, 1126
PkrI GCNGC 6 cut(s) 245, 423, 426, 463, 822, 1146
PleI GAGTC 3 cut(s) 209, 400, 691
PluTI GGCGCC 2 cut(s) 597, 985
PpsI GAGTC 3 cut(s) 209, 400, 691
PpuMI RGGWCCY 2 cut(s) 133, 585
Psp124BI GAGCTC 1 cut(s) 366
Psp5II RGGWCCY 2 cut(s) 133, 585
PspFI CCCAGC 1 cut(s) 633
PspLI CGTACG 1 cut(s) 345
PspOMI GGGCCC 1 cut(s) 773
PspPPI RGGWCCY 2 cut(s) 133, 585
PstI CTGCAG 1 cut(s) 426
PstNI CAGNNNCTG 3 cut(s) 33, 421, 467
PvuII CAGCTG 3 cut(s) 243, 427, 1147
RsaI GTAC 5 cut(s) 347, 561, 900, 936, 1029
RsaNI GTAC 5 cut(s) 346, 560, 899, 935, 1028
SacI GAGCTC 1 cut(s) 366
SaqAI TTAA 1 cut(s) 726
SatI GCNGC 6 cut(s) 244, 422, 425, 462, 821, 1145
Sau3AI GATC 1 cut(s) 1149
SchI GAGTC 3 cut(s) 209, 401, 692
ScrFI CCNGG 5 cut(s) 548, 589, 590, 777, 778
SduI GDGCHC 4 cut(s) 269, 366, 777, 1006
SfaNI GCATC 1 cut(s) 1051
SfcI CTRYAG 1 cut(s) 422
SfoI GGCGCC 2 cut(s) 595, 983
SfuI TTCGAA 1 cut(s) 377
SinI GGWCC 6 cut(s) 115, 133, 297, 585, 845, 874
SmaI CCCGGG 2 cut(s) 590, 778
SmlI CTYRAG 1 cut(s) 919
SmoI CTYRAG 1 cut(s) 919
Sse9I AATT 4 cut(s) 41, 247, 379, 479
SsiI CCGC 7 cut(s) 111, 161, 564, 695, 821, 915, 1031
SspDI GGCGCC 2 cut(s) 593, 981
SspMI CTAG 3 cut(s) 327, 764, 1153
SstI GAGCTC 1 cut(s) 366
StyD4I CCNGG 5 cut(s) 546, 587, 588, 775, 776
StyI CCWWGG 1 cut(s) 567
TaaI ACNGT 4 cut(s) 29, 232, 702, 724
TaiI ACGT 2 cut(s) 666, 932
TaqI TCGA 7 cut(s) 69, 141, 366, 377, 448, 910, 1086
TasI AATT 4 cut(s) 41, 247, 379, 479
TauI GCSGC 1 cut(s) 823
TfiI GAWTC 1 cut(s) 1114
Tru1I TTAA 1 cut(s) 726
Tru9I TTAA 1 cut(s) 726
TscAI CASTG 3 cut(s) 217, 409, 715
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 5 cut(s) 243, 421, 424, 461, 1144
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 2 cut(s) 112, 455
TspGWI ACGGA 2 cut(s) 678, 824
TspMI CCCGGG 2 cut(s) 588, 776
TspRI CASTG 3 cut(s) 217, 409, 715
Van91I CCANNNNNTGG 2 cut(s) 124, 1126
VpaK11BI GGWCC 6 cut(s) 115, 133, 297, 585, 845, 874
XapI RAATTY 1 cut(s) 379
XceI RCATGY 1 cut(s) 415
XmaI CCCGGG 2 cut(s) 588, 776
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 3 cut(s) 327, 764, 1153
ZraI GACGTC 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.