MD15G1092500.v1.1

Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
6433298 .. 6435068
1771 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1092500.v1.1.491

Sequence Viewer

Length: 1125 bp
ATGGAAGCTCCGGAGTATTACCAGAACTCTTTCTGCCCGCAATTCACACCCGAAAAGCGCCACCCCTTCGACAACAACAAAACCGCCGTTGGTGGTGGTGGCGGGGACCACTTCAAGGTGGAGGACCTCCTCGACTTTTCCAATGACGACGACGATGTCATTACCGACGGCGGCTGTTCCGCGGCTGCTGCTTTCGAGAACGTCGCCGGAAACTCCACCGACTCTTCCACACTCACCGTCATGGACAGCTGCAATTCTTCCTCCTTGTCGGGCTCCGAACCCATTTTCGGGTCCCGGAATCTCGCCGACGGCCCCTTATCCAGTGAACTCTGCGTCCCGTACGACGATTTGGCTGAGCTCGAATGGCTGTCGAATTTCGTGGAGGAGTCGTTTTCCAGTGAGGACCTGCAGAAGCTGCAGCTGATATCCGGAATGAAAGCCCGACCCGACGAGGCCGCCTCTGAAACCGGACAACTCCAACCGGACCCCACCCGAACCAACAACAATCCTTACAGCAATTCCAACCCGATATTCAACCCGGAAGTTTCGGTACCCGCCAAGGCCAGAAGCAAGCGGTCCCGGGCCTCCCCGTGCAACTGGACCTCCCGCATCCTCGTCCTCTCCTCGACTAAGGAACAATCCGACGTTCTGGTGTCGGCGGAGGAGGCGGCGACACTGCTACCGCAGCCGTCGAGCACCGGGAAGAAGTCGGTGAAGTCGGCACCGAAAAAGAAGGAGAGCCAGGAAGGTTCGGGCGGCGGGCCCTGTGACGGGAGGAAGTGCCTGCATTGCGCGACGGACAAAACGCCGCAGTGGCGGACGGGGCCGATGGGTCCGAAGACACTGTGTAACGCGTGCGGGGTTCGGTACAAGTCGGGTCGGCTCGTGCCAGAGTACCGACCCGCGGCAAGTCCGACGTTCGTTCTGACGAAGCACTCCAACTCGCACCGTAAGGTACTGGAGCTGCGGCGGCAGAAGGAGATGGGAAGGGCGCAGCAGACGTATATTCACCAGGTGCCGCCTCCGCACCACCACCACCATCAGAATATGGTGTTTGACGTAAGCAACGGCGGAGATTACTTGATTCATCAGCACGTGGGGCCCGATTTCCGGCAGCTGATCTAG

Protein Analysis

375

Amino Acids

40.85

Weight (kDa)

6.01

Isoelectric Point (pI)

52.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 261 - 295 7.2e-15 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 155
Acc36I ACCTGC 1 cut(s) 414
Acc65I GGTACC 1 cut(s) 550
AccB1I GGYRCC 3 cut(s) 550, 721, 1015
AccII CGCG 4 cut(s) 182, 794, 854, 905
AccIII TCCGGA 2 cut(s) 10, 428
AcsI RAATTY 1 cut(s) 373
AcvI CACGTG 1 cut(s) 1096
AdeI CACNNNGTG 1 cut(s) 1015
AfaI GTAC 5 cut(s) 341, 552, 869, 896, 957
AfiI CCNNNNNNNGG 7 cut(s) 115, 287, 288, 770, 771, 904, 1110
AflIII ACRYGT 1 cut(s) 852
AgsI TTSAA 2 cut(s) 115, 535
AjnI CCWGG 2 cut(s) 741, 1011
AjuI GAANNNNNNNTTGG 2 cut(s) 515, 547
AloI GAACNNNNNNTCC 2 cut(s) 318, 350
AluBI AGCT 7 cut(s) 8, 249, 358, 415, 421, 964, 1117
AluI AGCT 7 cut(s) 8, 249, 358, 415, 421, 964, 1117
Alw21I GWGCWC 2 cut(s) 360, 698
AlwNI CAGNNNCTG 1 cut(s) 415
Ama87I CYCGRG 1 cut(s) 579
Aor13HI TCCGGA 2 cut(s) 10, 428
AoxI GGCC 7 cut(s) 310, 453, 561, 582, 761, 824, 1100
ApaI GGGCCC 2 cut(s) 765, 1104
ApeKI GCWGC 9 cut(s) 185, 188, 249, 415, 418, 685, 964, 994, 1114
ApoI RAATTY 1 cut(s) 373
Asp700I GAANNNNTTC 1 cut(s) 29
Asp718I GGTACC 1 cut(s) 550
AspLEI GCGC 3 cut(s) 60, 794, 994
AsuC2I CCSGG 5 cut(s) 295, 539, 580, 581, 700
AsuHPI GGTGA 3 cut(s) 226, 724, 1001
AvaI CYCGRG 1 cut(s) 579
AvaII GGWCC 8 cut(s) 106, 124, 291, 403, 484, 576, 600, 833
BaeGI GKGCMC 2 cut(s) 765, 1104
BanI GGYRCC 3 cut(s) 550, 721, 1015
BanII GRGCYC 4 cut(s) 275, 360, 765, 1104
BarI GAAGNNNNNNTAC 2 cut(s) 534, 566
BauI CACGAG 1 cut(s) 884
BbrPI CACGTG 1 cut(s) 1096
BbsI GAAGAC 1 cut(s) 845
Bbv12I GWGCWC 2 cut(s) 360, 698
BbvI GCAGC 8 cut(s) 172, 175, 236, 402, 430, 697, 951, 1006
BccI CCATC 3 cut(s) 823, 976, 1047
BceAI ACGGC 5 cut(s) 71, 184, 325, 673, 1084
BciT130I CCWGG 2 cut(s) 743, 1013
BcnI CCSGG 5 cut(s) 295, 539, 580, 581, 700
BfaI CTAG 1 cut(s) 1123
BfmI CTRYAG 2 cut(s) 407, 416
BfoI RGCGCY 1 cut(s) 61
BfuAI ACCTGC 1 cut(s) 414
BglI GCCNNNNNGGC 1 cut(s) 814
BlpI GCTNAGC 1 cut(s) 354
Bme1390I CCNGG 7 cut(s) 295, 539, 580, 581, 700, 743, 1013
Bme18I GGWCC 8 cut(s) 106, 124, 291, 403, 484, 576, 600, 833
BmeT110I CYCGRG 1 cut(s) 579
BmrFI CCNGG 7 cut(s) 295, 539, 580, 581, 700, 743, 1013
BmsI GCATC 1 cut(s) 618
BpiI GAAGAC 1 cut(s) 845
BplI GAGNNNNNCTC 2 cut(s) 443, 475
BpmI CTGGAG 1 cut(s) 980
Bpu1102I GCTNAGC 1 cut(s) 354
BpuMI CCSGG 5 cut(s) 295, 539, 580, 581, 700
BsaAI YACGTR 1 cut(s) 1096
BsaJI CCNNGG 4 cut(s) 180, 558, 579, 903
BsaWI WCCGGW 4 cut(s) 10, 428, 467, 481
BsaXI ACNNNNNCTCC 4 cut(s) 374, 404, 587, 617
Bsc4I CCNNNNNNNGG 7 cut(s) 115, 287, 288, 770, 771, 904, 1110
Bse1I ACTGG 4 cut(s) 321, 396, 602, 963
Bse3DI GCAATG 1 cut(s) 787
BseAI TCCGGA 2 cut(s) 10, 428
BseBI CCWGG 2 cut(s) 743, 1013
BseDI CCNNGG 4 cut(s) 180, 558, 579, 903
BseGI GGATG 1 cut(s) 609
BseLI CCNNNNNNNGG 7 cut(s) 115, 287, 288, 770, 771, 904, 1110
BseMI GCAATG 1 cut(s) 787
BseMII CTCAG 1 cut(s) 345
BseNI ACTGG 4 cut(s) 321, 396, 602, 963
BseRI GAGGAG 4 cut(s) 119, 398, 613, 677
BseSI GKGCMC 2 cut(s) 765, 1104
BseXI GCAGC 8 cut(s) 172, 175, 236, 402, 430, 697, 951, 1006
Bsh1236I CGCG 4 cut(s) 182, 794, 854, 905
BshFI GGCC 7 cut(s) 312, 455, 563, 584, 763, 826, 1102
BshNI GGYRCC 3 cut(s) 550, 721, 1015
BsiHKAI GWGCWC 2 cut(s) 360, 698
BsiHKCI CYCGRG 1 cut(s) 579
BsiWI CGTACG 1 cut(s) 339
BslFI GGGAC 4 cut(s) 119, 277, 320, 562
BslI CCNNNNNNNGG 7 cut(s) 115, 287, 288, 770, 771, 904, 1110
BsmFI GGGAC 4 cut(s) 119, 277, 320, 562
BsnI GGCC 7 cut(s) 312, 455, 563, 584, 763, 826, 1102
BsoBI CYCGRG 1 cut(s) 579
Bsp120I GGGCCC 2 cut(s) 761, 1100
Bsp1286I GDGCHC 5 cut(s) 275, 360, 698, 765, 1104
Bsp13I TCCGGA 2 cut(s) 10, 428
Bsp143I GATC 1 cut(s) 1119
Bsp1720I GCTNAGC 1 cut(s) 354
BspANI GGCC 7 cut(s) 312, 455, 563, 584, 763, 826, 1102
BspCNI CTCAG 1 cut(s) 346
BspEI TCCGGA 2 cut(s) 10, 428
BspFNI CGCG 4 cut(s) 182, 794, 854, 905
BspMAI CTGCAG 2 cut(s) 411, 420
BspMI ACCTGC 1 cut(s) 414
BspT107I GGYRCC 3 cut(s) 550, 721, 1015
BsrDI GCAATG 1 cut(s) 787
BsrI ACTGG 4 cut(s) 321, 396, 602, 963
BssECI CCNNGG 4 cut(s) 180, 558, 579, 903
BssMI GATC 1 cut(s) 1119
BssSI CACGAG 1 cut(s) 884
BssT1I CCWWGG 1 cut(s) 558
Bst2BI CACGAG 1 cut(s) 884
Bst2UI CCWGG 2 cut(s) 743, 1013
Bst4CI ACNGT 3 cut(s) 238, 846, 950
Bst6I CTCTTC 1 cut(s) 229
BstAPI GCANNNNNTGC 1 cut(s) 415
BstBAI YACGTR 1 cut(s) 1096
BstC8I GCNNGC 5 cut(s) 38, 572, 761, 785, 856
BstDEI CTNAG 2 cut(s) 354, 630
BstDSI CCRYGG 2 cut(s) 180, 903
BstF5I GGATG 1 cut(s) 609
BstFNI CGCG 4 cut(s) 182, 794, 854, 905
BstH2I RGCGCY 1 cut(s) 61
BstHHI GCGC 3 cut(s) 60, 794, 994
BstKTI GATC 1 cut(s) 1122
BstMBI GATC 1 cut(s) 1119
BstNI CCWGG 2 cut(s) 743, 1013
BstSCI CCNGG 7 cut(s) 293, 537, 578, 579, 698, 741, 1011
BstSFI CTRYAG 2 cut(s) 407, 416
BstSLI GKGCMC 2 cut(s) 765, 1104
BstUI CGCG 4 cut(s) 182, 794, 854, 905
BstV1I GCAGC 8 cut(s) 172, 175, 236, 402, 430, 697, 951, 1006
BstV2I GAAGAC 1 cut(s) 845
BsuRI GGCC 7 cut(s) 312, 455, 563, 584, 763, 826, 1102
BtgI CCRYGG 2 cut(s) 180, 903
BtsCI GGATG 1 cut(s) 609
BtsI GCAGTG 2 cut(s) 674, 818
BtsIMutI CAGTG 5 cut(s) 328, 403, 674, 818, 842
BveI ACCTGC 1 cut(s) 414
Cac8I GCNNGC 5 cut(s) 38, 572, 761, 785, 856
CaiI CAGNNNCTG 1 cut(s) 415
CfoI GCGC 3 cut(s) 60, 794, 994
Cfr42I CCGCGG 2 cut(s) 183, 906
Cfr9I CCCGGG 1 cut(s) 579
CseI GACGC 1 cut(s) 322
CsiI ACCWGGT 1 cut(s) 1011
Csp6I GTAC 5 cut(s) 340, 551, 868, 895, 956
CviAII CATG 1 cut(s) 241
CviQI GTAC 5 cut(s) 340, 551, 868, 895, 956
DdeI CTNAG 2 cut(s) 354, 630
DpnI GATC 1 cut(s) 1121
DpnII GATC 1 cut(s) 1119
DraIII CACNNNGTG 1 cut(s) 1015
DrdI GACNNNNNNGTC 1 cut(s) 155
DseDI GACNNNNNNGTC 1 cut(s) 155
Eam1104I CTCTTC 1 cut(s) 229
EarI CTCTTC 1 cut(s) 229
EciI GGCGGA 3 cut(s) 674, 832, 1086
Ecl136II GAGCTC 1 cut(s) 358
Eco130I CCWWGG 1 cut(s) 558
Eco24I GRGCYC 4 cut(s) 275, 360, 765, 1104
Eco32I GATATC 1 cut(s) 426
Eco47I GGWCC 8 cut(s) 106, 124, 291, 403, 484, 576, 600, 833
Eco53kI GAGCTC 1 cut(s) 358
Eco72I CACGTG 1 cut(s) 1096
Eco88I CYCGRG 1 cut(s) 579
EcoICRI GAGCTC 1 cut(s) 358
EcoO109I RGGNCCY 5 cut(s) 124, 291, 403, 762, 1100
EcoRII CCWGG 2 cut(s) 741, 1011
EcoRV GATATC 1 cut(s) 426
EcoT14I CCWWGG 1 cut(s) 558
EcoT38I GRGCYC 4 cut(s) 275, 360, 765, 1104
ErhI CCWWGG 1 cut(s) 558
FaeI CATG 1 cut(s) 244
FaiI YATR 3 cut(s) 242, 1005, 1049
FaqI GGGAC 4 cut(s) 119, 277, 320, 562
FatI CATG 1 cut(s) 240
FauI CCCGC 7 cut(s) 45, 95, 562, 614, 752, 851, 910
FokI GGATG 1 cut(s) 596
FriOI GRGCYC 4 cut(s) 275, 360, 765, 1104
FspBI CTAG 1 cut(s) 1123
GlaI GCGC 3 cut(s) 59, 793, 993
GsuI CTGGAG 1 cut(s) 980
HaeII RGCGCY 1 cut(s) 61
HaeIII GGCC 7 cut(s) 312, 455, 563, 584, 763, 826, 1102
HgaI GACGC 1 cut(s) 322
HhaI GCGC 3 cut(s) 60, 794, 994
Hin1II CATG 1 cut(s) 244
Hin6I GCGC 3 cut(s) 58, 792, 992
HinP1I GCGC 3 cut(s) 58, 792, 992
HinfI GANTC 4 cut(s) 221, 298, 386, 1084
HphI GGTGA 3 cut(s) 226, 724, 1001
Hpy166II GTNNAC 1 cut(s) 326
Hpy188I TCNGA 7 cut(s) 277, 463, 643, 837, 915, 927, 1044
Hpy188III TCNNGA 3 cut(s) 11, 196, 429
Hpy8I GTNNAC 1 cut(s) 326
HpyAV CCTTC 5 cut(s) 76, 727, 740, 970, 981
HpyCH4III ACNGT 3 cut(s) 238, 846, 950
HpyCH4IV ACGT 6 cut(s) 201, 645, 917, 1001, 1059, 1095
HpyCH4V TGCA 5 cut(s) 252, 409, 418, 594, 787
HpyF3I CTNAG 2 cut(s) 354, 630
HpySE526I ACGT 6 cut(s) 201, 645, 917, 1001, 1059, 1095
Hsp92II CATG 1 cut(s) 244
HspAI GCGC 3 cut(s) 58, 792, 992
KflI GGGWCCC 1 cut(s) 291
Kpn2I TCCGGA 2 cut(s) 10, 428
KpnI GGTACC 1 cut(s) 554
KspI CCGCGG 2 cut(s) 183, 906
Kzo9I GATC 1 cut(s) 1119
LmnI GCTCC 3 cut(s) 13, 278, 961
Lsp1109I GCAGC 8 cut(s) 172, 175, 236, 402, 430, 697, 951, 1006
LweI GCATC 1 cut(s) 618
MabI ACCWGGT 1 cut(s) 1011
MaeI CTAG 1 cut(s) 1123
MaeII ACGT 6 cut(s) 201, 645, 917, 1001, 1059, 1095
MaeIII GTNAC 2 cut(s) 767, 848
MalI GATC 1 cut(s) 1121
MboI GATC 1 cut(s) 1119
MboII GAAGA 4 cut(s) 216, 249, 715, 850
MhlI GDGCHC 5 cut(s) 275, 360, 698, 765, 1104
MluCI AATT 4 cut(s) 41, 253, 373, 517
MluI ACGCGT 1 cut(s) 852
MlyI GAGTC 2 cut(s) 215, 395
MmeI TCCRAC 5 cut(s) 502, 546, 666, 938, 963
MroI TCCGGA 2 cut(s) 10, 428
MroXI GAANNNNTTC 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 239
MspA1I CMGCKG 5 cut(s) 182, 249, 421, 905, 1117
MspR9I CCNGG 7 cut(s) 295, 539, 580, 581, 700, 743, 1013
MvaI CCWGG 2 cut(s) 743, 1013
MvnI CGCG 4 cut(s) 182, 794, 854, 905
NciI CCSGG 5 cut(s) 295, 539, 580, 581, 700
NdeII GATC 1 cut(s) 1119
NlaIII CATG 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 767
PcsI WCGNNNNNNNCGW 1 cut(s) 1101
PdmI GAANNNNTTC 1 cut(s) 29
PfeI GAWTC 2 cut(s) 298, 1084
Pfl23II CGTACG 1 cut(s) 339
PflFI GACNNNGTC 1 cut(s) 155
PfoI TCCNGGA 1 cut(s) 293
PleI GAGTC 2 cut(s) 215, 394
PmaCI CACGTG 1 cut(s) 1096
PmlI CACGTG 1 cut(s) 1096
PpsI GAGTC 2 cut(s) 215, 394
Ppu21I YACGTR 1 cut(s) 1096
PpuMI RGGWCCY 3 cut(s) 124, 291, 403
Psp124BI GAGCTC 1 cut(s) 360
Psp5II RGGWCCY 3 cut(s) 124, 291, 403
Psp6I CCWGG 2 cut(s) 741, 1011
PspCI CACGTG 1 cut(s) 1096
PspGI CCWGG 2 cut(s) 741, 1011
PspLI CGTACG 1 cut(s) 339
PspOMI GGGCCC 2 cut(s) 761, 1100
PspPPI RGGWCCY 3 cut(s) 124, 291, 403
PstI CTGCAG 2 cut(s) 411, 420
PstNI CAGNNNCTG 1 cut(s) 415
PsyI GACNNNGTC 1 cut(s) 155
PvuII CAGCTG 3 cut(s) 249, 421, 1117
RsaI GTAC 5 cut(s) 341, 552, 869, 896, 957
RsaNI GTAC 5 cut(s) 340, 551, 868, 895, 956
RseI CAYNNNNRTG 1 cut(s) 239
SacI GAGCTC 1 cut(s) 360
SacII CCGCGG 2 cut(s) 183, 906
Sau3AI GATC 1 cut(s) 1119
SchI GAGTC 2 cut(s) 215, 395
ScrFI CCNGG 7 cut(s) 295, 539, 580, 581, 700, 743, 1013
SduI GDGCHC 5 cut(s) 275, 360, 698, 765, 1104
SexAI ACCWGGT 1 cut(s) 1011
SfaNI GCATC 1 cut(s) 618
SfcI CTRYAG 2 cut(s) 407, 416
Sfr303I CCGCGG 2 cut(s) 183, 906
SgrBI CCGCGG 2 cut(s) 183, 906
SinI GGWCC 8 cut(s) 106, 124, 291, 403, 484, 576, 600, 833
SmaI CCCGGG 1 cut(s) 581
SmiMI CAYNNNNRTG 1 cut(s) 239
Sse9I AATT 4 cut(s) 41, 253, 373, 517
SspMI CTAG 1 cut(s) 1123
SstI GAGCTC 1 cut(s) 360
StyD4I CCNGG 7 cut(s) 293, 537, 578, 579, 698, 741, 1011
StyI CCWWGG 1 cut(s) 558
TaaI ACNGT 3 cut(s) 238, 846, 950
TaiI ACGT 6 cut(s) 204, 648, 920, 1004, 1062, 1098
TaqI TCGA 7 cut(s) 69, 132, 195, 360, 371, 626, 692
TasI AATT 4 cut(s) 41, 253, 373, 517
TfiI GAWTC 2 cut(s) 298, 1084
TscAI CASTG 5 cut(s) 328, 403, 681, 818, 849
TseFI GTSAC 1 cut(s) 767
TseI GCWGC 9 cut(s) 185, 188, 249, 415, 418, 685, 964, 994, 1114
Tsp45I GTSAC 1 cut(s) 767
TspDTI ATGAA 2 cut(s) 449, 1076
TspGWI ACGGA 1 cut(s) 812
TspMI CCCGGG 1 cut(s) 579
TspRI CASTG 5 cut(s) 328, 403, 681, 818, 849
Tth111I GACNNNGTC 1 cut(s) 155
VpaK11BI GGWCC 8 cut(s) 106, 124, 291, 403, 484, 576, 600, 833
XapI RAATTY 1 cut(s) 373
XmaI CCCGGG 1 cut(s) 579
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 1 cut(s) 1123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.