FvH4_6g32190

Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
25270666 .. 25272538
1873 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g32190.t1

Sequence Viewer

Length: 1008 bp
ATGGAACTGCCGGAATTATACGTCGGCGGATACTTCGACGACCACCTCTCGCCTGAGAAGAGGCAGCTCGTCGACCAGAAACCCCCCGCCGGCGGCGAGCAATTCACCATCGACGACCTCCTCGACTTCTCCAACGAGGACGCCCTCGTCACCGACGGCTTCTTCGACAGCGCCGTCGCTGGTAACTCCACCGACTCTTCCACCGTCACCGCCGTCGACAGCTGTAACTCCTCCGTCTCCGGCGGCGAGCCTCAATTCTCCGGTAACCGCAGCTTCGGCGACTCCCAGTTCTCCGGCGACCTCTGCGTTCCGTACGACGACTTGGCTGAGCTGGAATGGCTATCGAACTTTGTGGAAGACTCATTCTCAGCGGACAAAGACCTTCAAGCCCTTCAATTCCTCTCCACCACCACAGCCACCGCAAAGCCCCAAACCCCGGAAACCTCCTCCTCCGCGGAAACCCCGCAAAACCCGCCGCTCTTCCACAACGAGACGCCTCTCCCGGGAAAGGCCCGCAGCAAGCGCTCACGCGCCGCCCCCGGTGACTGGACCACGCGCCTCCTCCACCTCATCACTCCCAGCAACAACACCGACCCCAAGCCTCCCAAAACGACGTCGTCGCAGAAGAAGCGGGAAGGCGCGAGCTCCAACTCGGGTTCGGACTCTTCTGGCCGGAAGTGCCTCCACTGCGCGTCGGAGAAGACGCCGCAGTGGCGGACTGGGCCCATGGGCCCGAAGACGCTGTGTAACGCGTGTGGGGTCCGGTACAAGTCGGGTCGGCTGGTGCCCGAGTACCGACCCGCGGCGAGCCCGACGTTCGTGTCGGCCCGGCATTCGAATTCGCACCGGAAGGTTCTGGAGCTGCGGCGGCAGAAGGAGTTTCAGAGGTCGCATCAGCACCAGTTTCTGAGCCCGACTTCGATTTTTGGCGTATCCAACGGTGGGGATGAGTTCTTGATCCACCACCACCACCACCGAGGTGCGAATGATTTTCGACAGATGATGTAG

Protein Analysis

336

Amino Acids

36.76

Weight (kDa)

6.11

Isoelectric Point (pI)

48.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 227 - 261 6.6e-14 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 146, 173, 820
AatII GACGTC 1 cut(s) 617
AccB1I GGYRCC 1 cut(s) 784
AccBSI CCGCTC 1 cut(s) 478
AccI GTMKAC 2 cut(s) 72, 216
AccII CGCG 7 cut(s) 455, 531, 556, 641, 692, 752, 803
AclWI GGATC 1 cut(s) 952
AcoI YGGCCR 1 cut(s) 670
AcsI RAATTY 1 cut(s) 838
AcyI GRCGYC 4 cut(s) 141, 494, 614, 704
AfaI GTAC 3 cut(s) 314, 767, 794
AfeI AGCGCT 1 cut(s) 524
AfiI CCNNNNNNNGG 8 cut(s) 89, 92, 436, 503, 508, 546, 802, 942
AflIII ACRYGT 1 cut(s) 750
AgsI TTSAA 2 cut(s) 386, 395
AleI CACNNNNGTG 1 cut(s) 978
AluBI AGCT 6 cut(s) 67, 222, 273, 331, 645, 862
AluI AGCT 6 cut(s) 67, 222, 273, 331, 645, 862
Alw21I GWGCWC 1 cut(s) 647
Alw26I GTCTC 2 cut(s) 241, 485
AlwI GGATC 1 cut(s) 952
AlwNI CAGNNNCTG 1 cut(s) 907
Ama87I CYCGRG 3 cut(s) 502, 652, 788
Aor51HI AGCGCT 1 cut(s) 524
AoxI GGCC 5 cut(s) 510, 670, 722, 730, 825
ApaI GGGCCC 2 cut(s) 726, 734
ApeKI GCWGC 4 cut(s) 64, 270, 516, 862
ApoI RAATTY 1 cut(s) 838
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AspLEI GCGC 6 cut(s) 173, 525, 533, 558, 641, 692
AspS9I GGNCC 8 cut(s) 511, 549, 722, 723, 730, 731, 760, 826
AsuC2I CCSGG 5 cut(s) 437, 503, 504, 540, 829
AsuHPI GGTGA 4 cut(s) 97, 142, 199, 554
AsuII TTCGAA 1 cut(s) 836
AvaI CYCGRG 3 cut(s) 502, 652, 788
AvaII GGWCC 2 cut(s) 549, 760
BaeGI GKGCMC 3 cut(s) 726, 734, 789
BanI GGYRCC 1 cut(s) 784
BanII GRGCYC 5 cut(s) 647, 726, 734, 812, 914
BbsI GAAGAC 3 cut(s) 363, 707, 743
Bbv12I GWGCWC 1 cut(s) 647
BbvI GCAGC 4 cut(s) 76, 282, 528, 849
BccI CCATC 1 cut(s) 116
BceAI ACGGC 3 cut(s) 158, 172, 197
BciVI GTATCC 2 cut(s) 23, 943
BcnI CCSGG 5 cut(s) 437, 503, 504, 540, 829
BcoDI GTCTC 2 cut(s) 241, 485
BfoI RGCGCY 2 cut(s) 174, 526
BfuI GTATCC 2 cut(s) 23, 943
BglI GCCNNNNNGGC 1 cut(s) 712
BlpI GCTNAGC 1 cut(s) 327
Bme1390I CCNGG 5 cut(s) 437, 503, 504, 540, 829
Bme18I GGWCC 2 cut(s) 549, 760
BmeT110I CYCGRG 3 cut(s) 502, 652, 788
BmgT120I GGNCC 8 cut(s) 511, 549, 722, 723, 730, 731, 760, 826
BmiI GGNNCC 4 cut(s) 724, 732, 761, 786
BmrFI CCNGG 5 cut(s) 437, 503, 504, 540, 829
BmrI ACTGGG 2 cut(s) 280, 729
BmsI GCATC 1 cut(s) 901
BmuI ACTGGG 2 cut(s) 280, 729
BpiI GAAGAC 3 cut(s) 363, 707, 743
BpmI CTGGAG 1 cut(s) 878
Bpu1102I GCTNAGC 1 cut(s) 327
Bpu14I TTCGAA 1 cut(s) 836
BpuMI CCSGG 5 cut(s) 437, 503, 504, 540, 829
BsaHI GRCGYC 4 cut(s) 141, 494, 614, 704
BsaJI CCNNGG 7 cut(s) 435, 453, 502, 538, 726, 801, 976
BsaWI WCCGGW 3 cut(s) 260, 762, 846
Bsc4I CCNNNNNNNGG 8 cut(s) 89, 92, 436, 503, 508, 546, 802, 942
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 4 cut(s) 286, 551, 724, 901
BseDI CCNNGG 7 cut(s) 435, 453, 502, 538, 726, 801, 976
BseGI GGATG 1 cut(s) 952
BseLI CCNNNNNNNGG 8 cut(s) 89, 92, 436, 503, 508, 546, 802, 942
BseMII CTCAG 4 cut(s) 45, 318, 381, 899
BseNI ACTGG 4 cut(s) 286, 551, 724, 901
BseRI GAGGAG 5 cut(s) 110, 220, 436, 439, 551
BseSI GKGCMC 3 cut(s) 726, 734, 789
BseXI GCAGC 4 cut(s) 76, 282, 528, 849
BseYI CCCAGC 1 cut(s) 578
Bsh1236I CGCG 7 cut(s) 455, 531, 556, 641, 692, 752, 803
BshFI GGCC 5 cut(s) 512, 672, 724, 732, 827
BshNI GGYRCC 1 cut(s) 784
BsiHKAI GWGCWC 1 cut(s) 647
BsiHKCI CYCGRG 3 cut(s) 502, 652, 788
BsiWI CGTACG 1 cut(s) 312
BslI CCNNNNNNNGG 8 cut(s) 89, 92, 436, 503, 508, 546, 802, 942
BsmAI GTCTC 2 cut(s) 241, 485
BsmBI CGTCTC 2 cut(s) 241, 485
BsmI GAATGC 1 cut(s) 832
BsnI GGCC 5 cut(s) 512, 672, 724, 732, 827
BsoBI CYCGRG 3 cut(s) 502, 652, 788
Bsp119I TTCGAA 1 cut(s) 836
Bsp120I GGGCCC 2 cut(s) 722, 730
Bsp1286I GDGCHC 6 cut(s) 647, 726, 734, 789, 812, 914
Bsp143I GATC 1 cut(s) 957
Bsp1720I GCTNAGC 1 cut(s) 327
Bsp19I CCATGG 1 cut(s) 726
BspANI GGCC 5 cut(s) 512, 672, 724, 732, 827
BspCNI CTCAG 4 cut(s) 46, 319, 380, 900
BspFNI CGCG 7 cut(s) 455, 531, 556, 641, 692, 752, 803
BspLI GGNNCC 4 cut(s) 724, 732, 761, 786
BspPI GGATC 1 cut(s) 952
BspQI GCTCTTC 1 cut(s) 485
BspT104I TTCGAA 1 cut(s) 836
BspT107I GGYRCC 1 cut(s) 784
BsrBI CCGCTC 1 cut(s) 478
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 4 cut(s) 286, 551, 724, 901
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 7 cut(s) 435, 453, 502, 538, 726, 801, 976
BssMI GATC 1 cut(s) 957
BssNI GRCGYC 4 cut(s) 141, 494, 614, 704
BssT1I CCWWGG 1 cut(s) 726
Bst4CI ACNGT 2 cut(s) 205, 941
Bst6I CTCTTC 4 cut(s) 53, 202, 485, 670
BstACI GRCGYC 4 cut(s) 141, 494, 614, 704
BstBI TTCGAA 1 cut(s) 836
BstC8I GCNNGC 7 cut(s) 91, 98, 248, 514, 521, 643, 808
BstDEI CTNAG 4 cut(s) 54, 327, 367, 908
BstDSI CCRYGG 3 cut(s) 453, 726, 801
BstEII GGTNACC 1 cut(s) 263
BstF5I GGATG 1 cut(s) 952
BstFNI CGCG 7 cut(s) 455, 531, 556, 641, 692, 752, 803
BstH2I RGCGCY 2 cut(s) 174, 526
BstHHI GCGC 6 cut(s) 173, 525, 533, 558, 641, 692
BstKTI GATC 1 cut(s) 960
BstMAI GTCTC 2 cut(s) 241, 485
BstMBI GATC 1 cut(s) 957
BstPI GGTNACC 1 cut(s) 263
BstSCI CCNGG 5 cut(s) 435, 501, 502, 538, 827
BstSLI GKGCMC 3 cut(s) 726, 734, 789
BstUI CGCG 7 cut(s) 455, 531, 556, 641, 692, 752, 803
BstV1I GCAGC 4 cut(s) 76, 282, 528, 849
BstV2I GAAGAC 3 cut(s) 363, 707, 743
BsuI GTATCC 2 cut(s) 23, 943
BsuRI GGCC 5 cut(s) 512, 672, 724, 732, 827
BtgI CCRYGG 3 cut(s) 453, 726, 801
BtsCI GGATG 1 cut(s) 952
BtsI GCAGTG 2 cut(s) 685, 716
BtsIMutI CAGTG 2 cut(s) 685, 716
Cac8I GCNNGC 7 cut(s) 91, 98, 248, 514, 521, 643, 808
CaiI CAGNNNCTG 1 cut(s) 907
CfoI GCGC 6 cut(s) 173, 525, 533, 558, 641, 692
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 8 cut(s) 511, 549, 722, 723, 730, 731, 760, 826
Cfr42I CCGCGG 2 cut(s) 456, 804
Cfr9I CCCGGG 1 cut(s) 502
CseI GACGC 5 cut(s) 149, 502, 681, 712, 748
Csp6I GTAC 3 cut(s) 313, 766, 793
CviAII CATG 1 cut(s) 727
CviQI GTAC 3 cut(s) 313, 766, 793
DdeI CTNAG 4 cut(s) 54, 327, 367, 908
DpnI GATC 1 cut(s) 959
DpnII GATC 1 cut(s) 957
DrdI GACNNNNNNGTC 3 cut(s) 146, 173, 820
DseDI GACNNNNNNGTC 3 cut(s) 146, 173, 820
EaeI YGGCCR 1 cut(s) 670
Eam1104I CTCTTC 4 cut(s) 53, 202, 485, 670
EarI CTCTTC 4 cut(s) 53, 202, 485, 670
EciI GGCGGA 2 cut(s) 42, 730
Ecl136II GAGCTC 1 cut(s) 645
Eco130I CCWWGG 1 cut(s) 726
Eco24I GRGCYC 5 cut(s) 647, 726, 734, 812, 914
Eco47I GGWCC 2 cut(s) 549, 760
Eco47III AGCGCT 1 cut(s) 524
Eco53kI GAGCTC 1 cut(s) 645
Eco88I CYCGRG 3 cut(s) 502, 652, 788
Eco91I GGTNACC 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 645
EcoO65I GGTNACC 1 cut(s) 263
EcoRI GAATTC 1 cut(s) 838
EcoT14I CCWWGG 1 cut(s) 726
EcoT38I GRGCYC 5 cut(s) 647, 726, 734, 812, 914
ErhI CCWWGG 1 cut(s) 726
Esp3I CGTCTC 2 cut(s) 241, 485
FaeI CATG 1 cut(s) 730
FaiI YATR 2 cut(s) 19, 728
FatI CATG 1 cut(s) 726
FauI CCCGC 6 cut(s) 94, 471, 480, 521, 624, 808
FblI GTMKAC 2 cut(s) 72, 216
FokI GGATG 1 cut(s) 959
FriOI GRGCYC 5 cut(s) 647, 726, 734, 812, 914
GlaI GCGC 6 cut(s) 172, 524, 532, 557, 640, 691
GsaI CCCAGC 1 cut(s) 582
GsuI CTGGAG 1 cut(s) 878
HaeII RGCGCY 2 cut(s) 174, 526
HaeIII GGCC 5 cut(s) 512, 672, 724, 732, 827
HgaI GACGC 5 cut(s) 149, 502, 681, 712, 748
HhaI GCGC 6 cut(s) 173, 525, 533, 558, 641, 692
Hin1I GRCGYC 4 cut(s) 141, 494, 614, 704
Hin1II CATG 1 cut(s) 730
Hin6I GCGC 6 cut(s) 171, 523, 531, 556, 639, 690
HinP1I GCGC 6 cut(s) 171, 523, 531, 556, 639, 690
HincII GTYRAC 2 cut(s) 73, 217
HindII GTYRAC 2 cut(s) 73, 217
HinfI GANTC 4 cut(s) 194, 281, 359, 662
HphI GGTGA 4 cut(s) 97, 142, 199, 554
Hpy166II GTNNAC 2 cut(s) 73, 217
Hpy188I TCNGA 4 cut(s) 661, 697, 885, 909
Hpy188III TCNNGA 2 cut(s) 857, 955
Hpy8I GTNNAC 2 cut(s) 73, 217
HpyAV CCTTC 5 cut(s) 392, 401, 629, 844, 868
HpyCH4III ACNGT 2 cut(s) 205, 941
HpyCH4IV ACGT 3 cut(s) 21, 614, 815
HpyF3I CTNAG 4 cut(s) 54, 327, 367, 908
HpySE526I ACGT 3 cut(s) 21, 614, 815
Hsp92I GRCGYC 4 cut(s) 141, 494, 614, 704
Hsp92II CATG 1 cut(s) 730
HspAI GCGC 6 cut(s) 171, 523, 531, 556, 639, 690
KroI GCCGGC 1 cut(s) 89
KroNI GCCGGC 1 cut(s) 91
KspI CCGCGG 2 cut(s) 456, 804
Kzo9I GATC 1 cut(s) 957
LguI GCTCTTC 1 cut(s) 485
LmnI GCTCC 2 cut(s) 650, 859
Lsp1109I GCAGC 4 cut(s) 76, 282, 528, 849
LweI GCATC 1 cut(s) 901
MaeII ACGT 3 cut(s) 21, 614, 815
MaeIII GTNAC 7 cut(s) 148, 182, 205, 224, 263, 542, 746
MalI GATC 1 cut(s) 959
MbiI CCGCTC 1 cut(s) 478
MboI GATC 1 cut(s) 957
MboII GAAGA 9 cut(s) 70, 154, 189, 368, 472, 637, 657, 712, 748
MhlI GDGCHC 6 cut(s) 647, 726, 734, 789, 812, 914
MluCI AATT 5 cut(s) 14, 101, 254, 395, 838
MluI ACGCGT 1 cut(s) 750
MlyI GAGTC 4 cut(s) 188, 275, 353, 656
MmeI TCCRAC 4 cut(s) 156, 672, 675, 960
MreI CGCCGGCG 1 cut(s) 89
MroNI GCCGGC 1 cut(s) 89
MslI CAYNNNNRTG 1 cut(s) 978
MspA1I CMGCKG 4 cut(s) 222, 371, 455, 803
MspR9I CCNGG 5 cut(s) 437, 503, 504, 540, 829
Mva1269I GAATGC 1 cut(s) 832
MvnI CGCG 7 cut(s) 455, 531, 556, 641, 692, 752, 803
NaeI GCCGGC 1 cut(s) 91
NciI CCSGG 5 cut(s) 437, 503, 504, 540, 829
NcoI CCATGG 1 cut(s) 726
NdeII GATC 1 cut(s) 957
NgoMIV GCCGGC 1 cut(s) 89
NlaIII CATG 1 cut(s) 730
NlaIV GGNNCC 4 cut(s) 724, 732, 761, 786
NmuCI GTSAC 3 cut(s) 148, 205, 542
NspV TTCGAA 1 cut(s) 836
OliI CACNNNNGTG 1 cut(s) 978
PciSI GCTCTTC 1 cut(s) 485
PcsI WCGNNNNNNNCGW 3 cut(s) 120, 162, 171
PctI GAATGC 1 cut(s) 832
PdiI GCCGGC 1 cut(s) 91
Pfl23II CGTACG 1 cut(s) 312
PflFI GACNNNGTC 1 cut(s) 616
PleI GAGTC 4 cut(s) 188, 275, 353, 656
PpsI GAGTC 4 cut(s) 188, 275, 353, 656
Psp124BI GAGCTC 1 cut(s) 647
PspEI GGTNACC 1 cut(s) 263
PspFI CCCAGC 1 cut(s) 578
PspLI CGTACG 1 cut(s) 312
PspN4I GGNNCC 4 cut(s) 724, 732, 761, 786
PspOMI GGGCCC 2 cut(s) 722, 730
PspPI GGNCC 8 cut(s) 511, 549, 722, 723, 730, 731, 760, 826
PstNI CAGNNNCTG 1 cut(s) 907
PsyI GACNNNGTC 1 cut(s) 616
PvuII CAGCTG 1 cut(s) 222
RsaI GTAC 3 cut(s) 314, 767, 794
RsaNI GTAC 3 cut(s) 313, 766, 793
RseI CAYNNNNRTG 1 cut(s) 978
SacI GAGCTC 1 cut(s) 647
SacII CCGCGG 2 cut(s) 456, 804
SalI GTCGAC 2 cut(s) 71, 215
SapI GCTCTTC 1 cut(s) 485
Sau3AI GATC 1 cut(s) 957
Sau96I GGNCC 8 cut(s) 511, 549, 722, 723, 730, 731, 760, 826
SchI GAGTC 4 cut(s) 188, 275, 353, 656
ScrFI CCNGG 5 cut(s) 437, 503, 504, 540, 829
SduI GDGCHC 6 cut(s) 647, 726, 734, 789, 812, 914
SfaNI GCATC 1 cut(s) 901
Sfr303I CCGCGG 2 cut(s) 456, 804
SfuI TTCGAA 1 cut(s) 836
SgrAI CRCCGGYG 1 cut(s) 89
SgrBI CCGCGG 2 cut(s) 456, 804
SinI GGWCC 2 cut(s) 549, 760
SmaI CCCGGG 1 cut(s) 504
SmiMI CAYNNNNRTG 1 cut(s) 978
Sse9I AATT 5 cut(s) 14, 101, 254, 395, 838
SstI GAGCTC 1 cut(s) 647
StyD4I CCNGG 5 cut(s) 435, 501, 502, 538, 827
StyI CCWWGG 1 cut(s) 726
TaaI ACNGT 2 cut(s) 205, 941
TaiI ACGT 3 cut(s) 24, 617, 818
TasI AATT 5 cut(s) 14, 101, 254, 395, 838
TauI GCSGC 8 cut(s) 96, 246, 478, 536, 709, 806, 868, 871
TscAI CASTG 2 cut(s) 692, 716
TseFI GTSAC 3 cut(s) 148, 205, 542
TseI GCWGC 4 cut(s) 64, 270, 516, 862
Tsp45I GTSAC 3 cut(s) 148, 205, 542
TspGWI ACGGA 2 cut(s) 223, 300
TspMI CCCGGG 1 cut(s) 502
TspRI CASTG 2 cut(s) 692, 716
Tth111I GACNNNGTC 1 cut(s) 616
VpaK11BI GGWCC 2 cut(s) 549, 760
XapI RAATTY 1 cut(s) 838
XmaI CCCGGG 1 cut(s) 502
XmiI GTMKAC 2 cut(s) 72, 216
ZraI GACGTC 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.