Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8403039.1

Orthogroup ID

OG0004079

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 996

Gene Structure 996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8403039.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

tccggtaaccggagcttcggcgactctcagttctccggcgacctctgcgttccgtacgacgacttggctgagctggaatggctatcgaactttgtggaagactcgttctcagtagacaaagaccttcaagcccttcaaatcctctccacaaccaccgcaaaaccccaaacccccgaaacgtcctcctcctccgccgaaacgccgcaaaacccgccgctcttccaccacgagactcctctccccggcaaggcccgaagcaagcgctcacgcgctgcccccggcgactggaccacgcgcctcctccacctcatcactcccaacaacagcagcgagcccaagccggcggcgaaaacgacgacgtcgtcgcagaagaagagagaaggcggcagctgcaactcgggttcggactcttcgggccggaaatgcctccactgcgcctcggagaagacgccccagtggcggaccgggcccatgggcccaaagacgctgtgcaacgcctgtggggtccgctacaagtcgggtcggctggtgcccgagtaccgacccgccgcgagcccgacatttgtgtcggcccggcattcgaattcgcaccggaaggttctggagctgcggcggcagaaggagtttcagaggtcacatcagcatcagtttctgagcccgagttccatttttggcgtatccaacggtggtggggatgagttcttgatccaccaccgaggtgcgaacgattttcgacagatgatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0007623 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048511 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GATA

Protein Analysis

248

Amino Acids

27.31

Weight (kDa)

9.32

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004079)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32890 AT5G25830
fragaria_vesca	FvH4_2g35450 FvH4_6g32190
malus_domestica	MD08G1113200.v1.1 MD09G1205600.v1.1 MD15G1092500.v1.1 MD17G1185900.v1.1
prunus_persica	Prupe.1G447300_v2.0.a1 Prupe.1G447400_v2.0.a1 Prupe.3G060900_v2.0.a1
pyrus_communis	pycom08g09390 pycom17g19520
rosa_chinensis	RchiOBHm_Chr2g0140091
rosa_laevigata	RLG00000010798 RLG00000019848
rosa_multiflora	Rmu_co8403039.1_g000001 Rmu_sc0002971.1_g000022 Rmu_sc0003244.1_g000030
rosa_roxburghii	Rroxscaffold_2G00105070 Rroxscaffold_7G00161780
rosa_rugosa	Rorug02G0361000.1 Rorug06G0349300
rosa_samantha	Rh2AG411700 Rh2BG422000 Rh2CG397800 Rh2DG431400 Rh6AG461600 Rh6BG439500 Rh6CG475600 Rh6DG462400
rosa_wichuraiana	Rw2G033730 Rw6G040230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	361, 565
AatII	GACGTC	1 cut(s)	362
AccB1I	GGYRCC	1 cut(s)	529
AccBSI	CCGCTC	1 cut(s)	217
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	3 cut(s)	270, 295, 551
AclWI	GGATC	1 cut(s)	700
AcsI	RAATTY	1 cut(s)	583
AcyI	GRCGYC	2 cut(s)	359, 449
AfaI	GTAC	2 cut(s)	56, 539
AfeI	AGCGCT	1 cut(s)	263
AfiI	CCNNNNNNNGG	5 cut(s)	9, 242, 247, 285, 459
AgsI	TTSAA	2 cut(s)	128, 137
AleI	CACNNNNGTG	1 cut(s)	717
AloI	GAACNNNNNNTCC	2 cut(s)	89, 121
AluBI	AGCT	4 cut(s)	15, 73, 390, 607
AluI	AGCT	4 cut(s)	15, 73, 390, 607
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	1 cut(s)	700
AlwNI	CAGNNNCTG	1 cut(s)	652
Ama87I	CYCGRG	3 cut(s)	397, 533, 658
Aor51HI	AGCGCT	1 cut(s)	263
AoxI	GGCC	5 cut(s)	249, 415, 467, 475, 570
ApaI	GGGCCC	2 cut(s)	471, 479
ApeKI	GCWGC	5 cut(s)	272, 327, 387, 390, 607
ApoI	RAATTY	1 cut(s)	583
AspLEI	GCGC	4 cut(s)	264, 272, 297, 437
AsuC2I	CCSGG	4 cut(s)	243, 279, 466, 574
AsuII	TTCGAA	1 cut(s)	581
AvaI	CYCGRG	3 cut(s)	397, 533, 658
AvaII	GGWCC	3 cut(s)	288, 462, 505
BaeGI	GKGCMC	3 cut(s)	471, 479, 534
BanI	GGYRCC	1 cut(s)	529
BanII	GRGCYC	5 cut(s)	336, 471, 479, 557, 659
BauI	CACGAG	1 cut(s)	227
BbsI	GAAGAC	2 cut(s)	105, 452
BbvI	GCAGC	5 cut(s)	259, 339, 377, 399, 594
BciVI	GTATCC	1 cut(s)	688
BcnI	CCSGG	4 cut(s)	243, 279, 466, 574
BcoDI	GTCTC	1 cut(s)	224
BfoI	RGCGCY	1 cut(s)	265
BfuI	GTATCC	1 cut(s)	688
BglI	GCCNNNNNGGC	1 cut(s)	457
BlpI	GCTNAGC	1 cut(s)	69
Bme1390I	CCNGG	4 cut(s)	243, 279, 466, 574
Bme18I	GGWCC	3 cut(s)	288, 462, 505
BmeT110I	CYCGRG	3 cut(s)	397, 533, 658
BmiI	GGNNCC	4 cut(s)	469, 477, 506, 531
BmrFI	CCNGG	4 cut(s)	243, 279, 466, 574
BmrI	ACTGGG	1 cut(s)	448
BmsI	GCATC	1 cut(s)	652
BmuI	ACTGGG	1 cut(s)	448
BpiI	GAAGAC	2 cut(s)	105, 452
BpmI	CTGGAG	1 cut(s)	623
Bpu1102I	GCTNAGC	1 cut(s)	69
Bpu14I	TTCGAA	1 cut(s)	581
BpuMI	CCSGG	4 cut(s)	243, 279, 466, 574
BsaHI	GRCGYC	2 cut(s)	359, 449
BsaJI	CCNNGG	5 cut(s)	241, 277, 438, 471, 715
BsaWI	WCCGGW	3 cut(s)	2, 9, 591
Bsc4I	CCNNNNNNNGG	5 cut(s)	9, 242, 247, 285, 459
Bse118I	RCCGGY	1 cut(s)	340
Bse1I	ACTGG	2 cut(s)	290, 454
BseDI	CCNNGG	5 cut(s)	241, 277, 438, 471, 715
BseGI	GGATG	1 cut(s)	700
BseLI	CCNNNNNNNGG	5 cut(s)	9, 242, 247, 285, 459
BseMII	CTCAG	4 cut(s)	41, 60, 123, 644
BseNI	ACTGG	2 cut(s)	290, 454
BseRI	GAGGAG	4 cut(s)	175, 178, 225, 290
BseSI	GKGCMC	3 cut(s)	471, 479, 534
BseXI	GCAGC	5 cut(s)	259, 339, 377, 399, 594
Bsh1236I	CGCG	3 cut(s)	270, 295, 551
BshFI	GGCC	5 cut(s)	251, 417, 469, 477, 572
BshNI	GGYRCC	1 cut(s)	529
BsiHKCI	CYCGRG	3 cut(s)	397, 533, 658
BsiWI	CGTACG	1 cut(s)	54
BslI	CCNNNNNNNGG	5 cut(s)	9, 242, 247, 285, 459
BsmAI	GTCTC	1 cut(s)	224
BsmI	GAATGC	1 cut(s)	577
BsnI	GGCC	5 cut(s)	251, 417, 469, 477, 572
BsoBI	CYCGRG	3 cut(s)	397, 533, 658
Bsp119I	TTCGAA	1 cut(s)	581
Bsp120I	GGGCCC	2 cut(s)	467, 475
Bsp1286I	GDGCHC	6 cut(s)	336, 471, 479, 534, 557, 659
Bsp143I	GATC	1 cut(s)	705
Bsp1720I	GCTNAGC	1 cut(s)	69
Bsp19I	CCATGG	1 cut(s)	471
BspANI	GGCC	5 cut(s)	251, 417, 469, 477, 572
BspCNI	CTCAG	4 cut(s)	40, 61, 122, 645
BspFNI	CGCG	3 cut(s)	270, 295, 551
BspLI	GGNNCC	4 cut(s)	469, 477, 506, 531
BspPI	GGATC	1 cut(s)	700
BspQI	GCTCTTC	1 cut(s)	224
BspT104I	TTCGAA	1 cut(s)	581
BspT107I	GGYRCC	1 cut(s)	529
BsrBI	CCGCTC	1 cut(s)	217
BsrFI	RCCGGY	1 cut(s)	340
BsrI	ACTGG	2 cut(s)	290, 454
BssAI	RCCGGY	1 cut(s)	340
BssECI	CCNNGG	5 cut(s)	241, 277, 438, 471, 715
BssMI	GATC	1 cut(s)	705
BssNI	GRCGYC	2 cut(s)	359, 449
BssSI	CACGAG	1 cut(s)	227
BssT1I	CCWWGG	1 cut(s)	471
Bst2BI	CACGAG	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	686
Bst6I	CTCTTC	3 cut(s)	224, 368, 415
BstACI	GRCGYC	2 cut(s)	359, 449
BstBI	TTCGAA	1 cut(s)	581
BstC8I	GCNNGC	4 cut(s)	260, 332, 342, 553
BstDEI	CTNAG	4 cut(s)	27, 69, 109, 653
BstDSI	CCRYGG	1 cut(s)	471
BstEII	GGTNACC	1 cut(s)	5
BstF5I	GGATG	1 cut(s)	700
BstFNI	CGCG	3 cut(s)	270, 295, 551
BstH2I	RGCGCY	1 cut(s)	265
BstHHI	GCGC	4 cut(s)	264, 272, 297, 437
BstKTI	GATC	1 cut(s)	708
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	1 cut(s)	705
BstMWI	GCNNNNNNNGC	9 cut(s)	45, 79, 211, 390, 423, 432, 457, 466, 613
BstPI	GGTNACC	1 cut(s)	5
BstSCI	CCNGG	4 cut(s)	241, 277, 464, 572
BstSLI	GKGCMC	3 cut(s)	471, 479, 534
BstUI	CGCG	3 cut(s)	270, 295, 551
BstV1I	GCAGC	5 cut(s)	259, 339, 377, 399, 594
BstV2I	GAAGAC	2 cut(s)	105, 452
BsuI	GTATCC	1 cut(s)	688
BsuRI	GGCC	5 cut(s)	251, 417, 469, 477, 572
BtgI	CCRYGG	1 cut(s)	471
BtsCI	GGATG	1 cut(s)	700
BtsI	GCAGTG	1 cut(s)	430
BtsIMutI	CAGTG	2 cut(s)	430, 461
Cac8I	GCNNGC	4 cut(s)	260, 332, 342, 553
CaiI	CAGNNNCTG	1 cut(s)	652
CfoI	GCGC	4 cut(s)	264, 272, 297, 437
Cfr10I	RCCGGY	1 cut(s)	340
CpoI	CGGWCCG	1 cut(s)	462
CseI	GACGC	2 cut(s)	457, 493
Csp6I	GTAC	2 cut(s)	55, 538
CspCI	CAANNNNNGTGG	4 cut(s)	481, 516, 670, 705
CspI	CGGWCCG	1 cut(s)	462
CviAII	CATG	1 cut(s)	472
CviQI	GTAC	2 cut(s)	55, 538
DdeI	CTNAG	4 cut(s)	27, 69, 109, 653
DpnI	GATC	1 cut(s)	707
DpnII	GATC	1 cut(s)	705
DrdI	GACNNNNNNGTC	2 cut(s)	361, 565
DseDI	GACNNNNNNGTC	2 cut(s)	361, 565
Eam1104I	CTCTTC	3 cut(s)	224, 368, 415
EarI	CTCTTC	3 cut(s)	224, 368, 415
EciI	GGCGGA	2 cut(s)	181, 475
Eco130I	CCWWGG	1 cut(s)	471
Eco24I	GRGCYC	5 cut(s)	336, 471, 479, 557, 659
Eco47I	GGWCC	3 cut(s)	288, 462, 505
Eco47III	AGCGCT	1 cut(s)	263
Eco88I	CYCGRG	3 cut(s)	397, 533, 658
Eco91I	GGTNACC	1 cut(s)	5
EcoO65I	GGTNACC	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	583
EcoT14I	CCWWGG	1 cut(s)	471
EcoT38I	GRGCYC	5 cut(s)	336, 471, 479, 557, 659
ErhI	CCWWGG	1 cut(s)	471
FaeI	CATG	1 cut(s)	475
FaiI	YATR	1 cut(s)	473
FatI	CATG	1 cut(s)	471
FauI	CCCGC	2 cut(s)	219, 553
FblI	GTMKAC	1 cut(s)	114
FokI	GGATG	1 cut(s)	707
FriOI	GRGCYC	5 cut(s)	336, 471, 479, 557, 659
GlaI	GCGC	4 cut(s)	263, 271, 296, 436
GsuI	CTGGAG	1 cut(s)	623
HaeII	RGCGCY	1 cut(s)	265
HaeIII	GGCC	5 cut(s)	251, 417, 469, 477, 572
HgaI	GACGC	2 cut(s)	457, 493
HhaI	GCGC	4 cut(s)	264, 272, 297, 437
Hin1I	GRCGYC	2 cut(s)	359, 449
Hin1II	CATG	1 cut(s)	475
Hin6I	GCGC	4 cut(s)	262, 270, 295, 435
HinP1I	GCGC	4 cut(s)	262, 270, 295, 435
HinfI	GANTC	4 cut(s)	23, 101, 232, 407
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	4 cut(s)	406, 442, 630, 654
Hpy188III	TCNNGA	2 cut(s)	602, 703
Hpy8I	GTNNAC	1 cut(s)	115
Hpy99I	CGWCG	5 cut(s)	62, 358, 361, 364, 367
HpyAV	CCTTC	5 cut(s)	134, 143, 374, 589, 613
HpyCH4III	ACNGT	1 cut(s)	686
HpyCH4IV	ACGT	2 cut(s)	179, 359
HpyCH4V	TGCA	2 cut(s)	393, 492
HpyF10VI	GCNNNNNNNGC	9 cut(s)	45, 79, 211, 390, 423, 432, 457, 466, 613
HpyF3I	CTNAG	4 cut(s)	27, 69, 109, 653
HpySE526I	ACGT	2 cut(s)	179, 359
Hsp92I	GRCGYC	2 cut(s)	359, 449
Hsp92II	CATG	1 cut(s)	475
HspAI	GCGC	4 cut(s)	262, 270, 295, 435
KroI	GCCGGC	1 cut(s)	340
KroNI	GCCGGC	1 cut(s)	342
Kzo9I	GATC	1 cut(s)	705
LguI	GCTCTTC	1 cut(s)	224
LmnI	GCTCC	2 cut(s)	12, 604
Lsp1109I	GCAGC	5 cut(s)	259, 339, 377, 399, 594
LweI	GCATC	1 cut(s)	652
MaeII	ACGT	2 cut(s)	179, 359
MaeIII	GTNAC	2 cut(s)	5, 633
MalI	GATC	1 cut(s)	707
MbiI	CCGCTC	1 cut(s)	217
MboI	GATC	1 cut(s)	705
MboII	GAAGA	6 cut(s)	110, 211, 382, 385, 402, 457
MhlI	GDGCHC	6 cut(s)	336, 471, 479, 534, 557, 659
MluCI	AATT	1 cut(s)	583
MlyI	GAGTC	4 cut(s)	17, 95, 226, 401
MmeI	TCCRAC	1 cut(s)	705
MroNI	GCCGGC	1 cut(s)	340
MslI	CAYNNNNRTG	1 cut(s)	717
MspA1I	CMGCKG	1 cut(s)	390
MspR9I	CCNGG	4 cut(s)	243, 279, 466, 574
Mva1269I	GAATGC	1 cut(s)	577
MvnI	CGCG	3 cut(s)	270, 295, 551
MwoI	GCNNNNNNNGC	9 cut(s)	45, 79, 211, 390, 423, 432, 457, 466, 613
NaeI	GCCGGC	1 cut(s)	342
NciI	CCSGG	4 cut(s)	243, 279, 466, 574
NcoI	CCATGG	1 cut(s)	471
NdeII	GATC	1 cut(s)	705
NgoMIV	GCCGGC	1 cut(s)	340
NlaIII	CATG	1 cut(s)	475
NlaIV	GGNNCC	4 cut(s)	469, 477, 506, 531
NmuCI	GTSAC	1 cut(s)	633
NspV	TTCGAA	1 cut(s)	581
OliI	CACNNNNGTG	1 cut(s)	717
PciSI	GCTCTTC	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	1 cut(s)	359
PctI	GAATGC	1 cut(s)	577
PdiI	GCCGGC	1 cut(s)	342
Pfl23II	CGTACG	1 cut(s)	54
PflFI	GACNNNGTC	2 cut(s)	358, 361
PleI	GAGTC	4 cut(s)	17, 95, 226, 401
PpsI	GAGTC	4 cut(s)	17, 95, 226, 401
PspEI	GGTNACC	1 cut(s)	5
PspLI	CGTACG	1 cut(s)	54
PspN4I	GGNNCC	4 cut(s)	469, 477, 506, 531
PspOMI	GGGCCC	2 cut(s)	467, 475
PstNI	CAGNNNCTG	1 cut(s)	652
PsyI	GACNNNGTC	2 cut(s)	358, 361
PvuII	CAGCTG	1 cut(s)	390
RsaI	GTAC	2 cut(s)	56, 539
RsaNI	GTAC	2 cut(s)	55, 538
RseI	CAYNNNNRTG	1 cut(s)	717
Rsr2I	CGGWCCG	1 cut(s)	462
RsrII	CGGWCCG	1 cut(s)	462
SapI	GCTCTTC	1 cut(s)	224
Sau3AI	GATC	1 cut(s)	705
SchI	GAGTC	4 cut(s)	17, 95, 226, 401
ScrFI	CCNGG	4 cut(s)	243, 279, 466, 574
SduI	GDGCHC	6 cut(s)	336, 471, 479, 534, 557, 659
SfaNI	GCATC	1 cut(s)	652
SfuI	TTCGAA	1 cut(s)	581
SinI	GGWCC	3 cut(s)	288, 462, 505
SmiMI	CAYNNNNRTG	1 cut(s)	717
Sse9I	AATT	1 cut(s)	583
StyD4I	CCNGG	4 cut(s)	241, 277, 464, 572
StyI	CCWWGG	1 cut(s)	471
TaaI	ACNGT	1 cut(s)	686
TaiI	ACGT	2 cut(s)	182, 362
TaqI	TCGA	3 cut(s)	86, 581, 733
TasI	AATT	1 cut(s)	583
TauI	GCSGC	7 cut(s)	205, 217, 347, 387, 551, 613, 616
TscAI	CASTG	2 cut(s)	437, 461
TseFI	GTSAC	1 cut(s)	633
TseI	GCWGC	5 cut(s)	272, 327, 387, 390, 607
Tsp45I	GTSAC	1 cut(s)	633
TspGWI	ACGGA	1 cut(s)	42
TspRI	CASTG	2 cut(s)	437, 461
Tth111I	GACNNNGTC	2 cut(s)	358, 361
VpaK11BI	GGWCC	3 cut(s)	288, 462, 505
XapI	RAATTY	1 cut(s)	583
XmiI	GTMKAC	1 cut(s)	114
ZraI	GACGTC	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.