Rh2BG422000

Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Reverse (-)
59303222 .. 59304911
1690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG422000.1

Sequence Viewer

Length: 1002 bp
ATGGAACTGCCGGAGTTTTACGTCGGCGGATACTTCGACGGCCAGCTATCCACCGAGAAGAGGCAGCTGGCGGACCAGAAGCCGGCCGGCGGCGAGCAATTCACCATCGACGACCTCCTCGACTTCTCCAACGAGGACGCTCTCGTCACCGACGGCTTCTTCGACAGCACCGTCGCCGGTAACTCCACCGACTCCTCCACCGTCACCGCCGTCGACAGCTGTAACTCCTCCGTCTCCGGCGGTGAGCCTCAATTATCCGGTAACCGGAGCTTCGGCGACTCTCAGTTCTCCGGCGACCTCTGCGTTCCGTACGACGACTTGGCTGAGCTGGAATGGCTATCGAACTTTGTGGAAGACTCGTTCTCAGTAGACAAAGACCTTCAAGCCCTTCAAATCCTCTCCACAACCACCGCGAAACCCCAAACCCCCGAAACGTCCTCCTCCTCCGCCGAAACGCCGCAAAACCCGCCGCTCTTCCACCACGAGACTCCTCTCCCCGGCAAGGCCCGAAGCAAGCGCTCACGCGCTGCCCCCGGCGACTGGACCACGCGCCTCCTCCACCTCATCACTCCCAACAACAGCAGCGAGCCCAAGCCGGCGCCCAAAACGACGACGTCGTCGCAGAAGAAGAGAGAAGGCGGCAGCTGCAACTCGGGTTCGGACTCTTCGGGCCGGAAATGCCTCCACTGCGCCTCGGAGAAGACGCCCCAGTGGCGGACCGGGCCCATGGGCCCAAAGACGCTGTGCAACGCCTGTGGGGTCCGCTACAAGTCGGGTCGGCTGGTGCCCGAGTACCGACCCGCGGCGAGCCCGACATTTGTATCGGCCCGGCATTCGAATTCGCACCGGAAGGTTCTGGAGCTGCGGCGGCAGAAGGAGTTTCAGAGGTCACATCAGCATCAGTTTCTGAGCCCGGGTTCCATTTTTGGCGTATCCAACGGTGGTGGGGATGAGTTCTTGATCCACCACCGAGGTGCGAACGATTTTCGACAGATGATGTAG

Protein Analysis

333

Amino Acids

36.31

Weight (kDa)

6.07

Isoelectric Point (pI)

52.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 227 - 261 6.6e-14 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 143, 170, 616
AatII GACGTC 1 cut(s) 617
AccB1I GGYRCC 2 cut(s) 598, 784
AccBSI CCGCTC 1 cut(s) 472
AccI GTMKAC 2 cut(s) 213, 369
AccII CGCG 4 cut(s) 413, 525, 550, 803
AclWI GGATC 1 cut(s) 955
AcoI YGGCCR 2 cut(s) 40, 84
AcsI RAATTY 1 cut(s) 838
AcyI GRCGYC 3 cut(s) 599, 614, 704
AfaI GTAC 2 cut(s) 311, 794
AfeI AGCGCT 1 cut(s) 518
AfiI CCNNNNNNNGG 9 cut(s) 60, 82, 89, 264, 497, 502, 540, 714, 802
AgsI TTSAA 2 cut(s) 383, 392
AleI CACNNNNGTG 1 cut(s) 972
AloI GAACNNNNNNTCC 2 cut(s) 344, 376
AluBI AGCT 7 cut(s) 46, 67, 219, 270, 328, 645, 862
AluI AGCT 7 cut(s) 46, 67, 219, 270, 328, 645, 862
Alw26I GTCTC 2 cut(s) 238, 479
AlwI GGATC 1 cut(s) 955
AlwNI CAGNNNCTG 1 cut(s) 907
Ama87I CYCGRG 3 cut(s) 652, 788, 913
Aor51HI AGCGCT 1 cut(s) 518
AoxI GGCC 7 cut(s) 40, 84, 504, 670, 722, 730, 825
ApaI GGGCCC 2 cut(s) 726, 734
ApeKI GCWGC 6 cut(s) 64, 527, 582, 642, 645, 862
ApoI RAATTY 1 cut(s) 838
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
AspLEI GCGC 5 cut(s) 519, 527, 552, 601, 692
AsuC2I CCSGG 6 cut(s) 498, 534, 721, 829, 914, 915
AsuHPI GGTGA 4 cut(s) 94, 139, 196, 254
AsuII TTCGAA 1 cut(s) 836
AvaI CYCGRG 3 cut(s) 652, 788, 913
AvaII GGWCC 4 cut(s) 73, 543, 717, 760
BaeGI GKGCMC 3 cut(s) 726, 734, 789
BaeI ACNNNNGTAYC 2 cut(s) 804, 837
BanI GGYRCC 2 cut(s) 598, 784
BanII GRGCYC 5 cut(s) 591, 726, 734, 812, 914
BauI CACGAG 1 cut(s) 482
BbsI GAAGAC 2 cut(s) 360, 707
BbvI GCAGC 6 cut(s) 76, 514, 594, 632, 654, 849
BccI CCATC 1 cut(s) 113
BceAI ACGGC 3 cut(s) 55, 169, 194
BciVI GTATCC 2 cut(s) 23, 943
BcnI CCSGG 6 cut(s) 498, 534, 721, 829, 914, 915
BcoDI GTCTC 2 cut(s) 238, 479
BfoI RGCGCY 2 cut(s) 520, 602
BfuI GTATCC 2 cut(s) 23, 943
BglI GCCNNNNNGGC 1 cut(s) 712
BlpI GCTNAGC 1 cut(s) 324
Bme1390I CCNGG 6 cut(s) 498, 534, 721, 829, 914, 915
Bme18I GGWCC 4 cut(s) 73, 543, 717, 760
BmeT110I CYCGRG 3 cut(s) 652, 788, 913
BmiI GGNNCC 6 cut(s) 600, 724, 732, 761, 786, 919
BmrFI CCNGG 6 cut(s) 498, 534, 721, 829, 914, 915
BmrI ACTGGG 1 cut(s) 703
BmsI GCATC 1 cut(s) 907
BmuI ACTGGG 1 cut(s) 703
BpiI GAAGAC 2 cut(s) 360, 707
BpmI CTGGAG 1 cut(s) 878
Bpu1102I GCTNAGC 1 cut(s) 324
Bpu14I TTCGAA 1 cut(s) 836
BpuMI CCSGG 6 cut(s) 498, 534, 721, 829, 914, 915
BsaHI GRCGYC 3 cut(s) 599, 614, 704
BsaJI CCNNGG 7 cut(s) 496, 532, 693, 726, 801, 913, 970
BsaWI WCCGGW 3 cut(s) 257, 264, 846
Bsc4I CCNNNNNNNGG 9 cut(s) 60, 82, 89, 264, 497, 502, 540, 714, 802
Bse118I RCCGGY 4 cut(s) 82, 86, 176, 595
Bse1I ACTGG 2 cut(s) 545, 709
BseDI CCNNGG 7 cut(s) 496, 532, 693, 726, 801, 913, 970
BseGI GGATG 1 cut(s) 955
BseLI CCNNNNNNNGG 9 cut(s) 60, 82, 89, 264, 497, 502, 540, 714, 802
BseMII CTCAG 4 cut(s) 296, 315, 378, 899
BseNI ACTGG 2 cut(s) 545, 709
BseRI GAGGAG 7 cut(s) 107, 184, 217, 430, 433, 480, 545
BseSI GKGCMC 3 cut(s) 726, 734, 789
BseX3I CGGCCG 1 cut(s) 84
BseXI GCAGC 6 cut(s) 76, 514, 594, 632, 654, 849
Bsh1236I CGCG 4 cut(s) 413, 525, 550, 803
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 7 cut(s) 42, 86, 506, 672, 724, 732, 827
BshNI GGYRCC 2 cut(s) 598, 784
BsiEI CGRYCG 1 cut(s) 87
BsiHKCI CYCGRG 3 cut(s) 652, 788, 913
BsiWI CGTACG 1 cut(s) 309
BslI CCNNNNNNNGG 9 cut(s) 60, 82, 89, 264, 497, 502, 540, 714, 802
BsmAI GTCTC 2 cut(s) 238, 479
BsmBI CGTCTC 1 cut(s) 238
BsmI GAATGC 1 cut(s) 832
BsnI GGCC 7 cut(s) 42, 86, 506, 672, 724, 732, 827
BsoBI CYCGRG 3 cut(s) 652, 788, 913
Bsp119I TTCGAA 1 cut(s) 836
Bsp120I GGGCCC 2 cut(s) 722, 730
Bsp1286I GDGCHC 6 cut(s) 591, 726, 734, 789, 812, 914
Bsp143I GATC 1 cut(s) 960
Bsp1720I GCTNAGC 1 cut(s) 324
Bsp19I CCATGG 1 cut(s) 726
BspANI GGCC 7 cut(s) 42, 86, 506, 672, 724, 732, 827
BspCNI CTCAG 4 cut(s) 295, 316, 377, 900
BspFNI CGCG 4 cut(s) 413, 525, 550, 803
BspLI GGNNCC 6 cut(s) 600, 724, 732, 761, 786, 919
BspPI GGATC 1 cut(s) 955
BspQI GCTCTTC 1 cut(s) 479
BspT104I TTCGAA 1 cut(s) 836
BspT107I GGYRCC 2 cut(s) 598, 784
BsrBI CCGCTC 1 cut(s) 472
BsrFI RCCGGY 4 cut(s) 82, 86, 176, 595
BsrI ACTGG 2 cut(s) 545, 709
BssAI RCCGGY 4 cut(s) 82, 86, 176, 595
BssECI CCNNGG 7 cut(s) 496, 532, 693, 726, 801, 913, 970
BssMI GATC 1 cut(s) 960
BssNI GRCGYC 3 cut(s) 599, 614, 704
BssSI CACGAG 1 cut(s) 482
BssT1I CCWWGG 1 cut(s) 726
Bst2BI CACGAG 1 cut(s) 482
Bst4CI ACNGT 3 cut(s) 172, 202, 941
Bst6I CTCTTC 4 cut(s) 53, 479, 623, 670
BstACI GRCGYC 3 cut(s) 599, 614, 704
BstBI TTCGAA 1 cut(s) 836
BstC8I GCNNGC 9 cut(s) 44, 69, 84, 88, 95, 515, 587, 597, 808
BstDEI CTNAG 4 cut(s) 282, 324, 364, 908
BstDSI CCRYGG 2 cut(s) 726, 801
BstEII GGTNACC 1 cut(s) 260
BstF5I GGATG 1 cut(s) 955
BstFNI CGCG 4 cut(s) 413, 525, 550, 803
BstH2I RGCGCY 2 cut(s) 520, 602
BstHHI GCGC 5 cut(s) 519, 527, 552, 601, 692
BstKTI GATC 1 cut(s) 963
BstMAI GTCTC 2 cut(s) 238, 479
BstMBI GATC 1 cut(s) 960
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 9 cut(s) 300, 334, 466, 645, 678, 687, 712, 721, 868
BstPI GGTNACC 1 cut(s) 260
BstSCI CCNGG 6 cut(s) 496, 532, 719, 827, 912, 913
BstSLI GKGCMC 3 cut(s) 726, 734, 789
BstUI CGCG 4 cut(s) 413, 525, 550, 803
BstV1I GCAGC 6 cut(s) 76, 514, 594, 632, 654, 849
BstV2I GAAGAC 2 cut(s) 360, 707
BstZI CGGCCG 1 cut(s) 84
BsuI GTATCC 2 cut(s) 23, 943
BsuRI GGCC 7 cut(s) 42, 86, 506, 672, 724, 732, 827
BtgI CCRYGG 2 cut(s) 726, 801
BtsCI GGATG 1 cut(s) 955
BtsI GCAGTG 1 cut(s) 685
BtsIMutI CAGTG 2 cut(s) 685, 716
Cac8I GCNNGC 9 cut(s) 44, 69, 84, 88, 95, 515, 587, 597, 808
CaiI CAGNNNCTG 1 cut(s) 907
CfoI GCGC 5 cut(s) 519, 527, 552, 601, 692
Cfr10I RCCGGY 4 cut(s) 82, 86, 176, 595
Cfr42I CCGCGG 1 cut(s) 804
Cfr9I CCCGGG 1 cut(s) 913
CpoI CGGWCCG 1 cut(s) 717
CseI GACGC 3 cut(s) 146, 712, 748
Csp6I GTAC 2 cut(s) 310, 793
CspCI CAANNNNNGTGG 4 cut(s) 736, 771, 925, 960
CspI CGGWCCG 1 cut(s) 717
CviAII CATG 1 cut(s) 727
CviQI GTAC 2 cut(s) 310, 793
DdeI CTNAG 4 cut(s) 282, 324, 364, 908
DinI GGCGCC 1 cut(s) 600
DpnI GATC 1 cut(s) 962
DpnII GATC 1 cut(s) 960
DrdI GACNNNNNNGTC 3 cut(s) 143, 170, 616
DseDI GACNNNNNNGTC 3 cut(s) 143, 170, 616
EaeI YGGCCR 2 cut(s) 40, 84
EagI CGGCCG 1 cut(s) 84
Eam1104I CTCTTC 4 cut(s) 53, 479, 623, 670
EarI CTCTTC 4 cut(s) 53, 479, 623, 670
EciI GGCGGA 4 cut(s) 42, 86, 436, 730
EclXI CGGCCG 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 726
Eco24I GRGCYC 5 cut(s) 591, 726, 734, 812, 914
Eco47I GGWCC 4 cut(s) 73, 543, 717, 760
Eco47III AGCGCT 1 cut(s) 518
Eco52I CGGCCG 1 cut(s) 84
Eco88I CYCGRG 3 cut(s) 652, 788, 913
Eco91I GGTNACC 1 cut(s) 260
EcoO65I GGTNACC 1 cut(s) 260
EcoRI GAATTC 1 cut(s) 838
EcoT14I CCWWGG 1 cut(s) 726
EcoT38I GRGCYC 5 cut(s) 591, 726, 734, 812, 914
EgeI GGCGCC 1 cut(s) 600
EheI GGCGCC 1 cut(s) 600
ErhI CCWWGG 1 cut(s) 726
Esp3I CGTCTC 1 cut(s) 238
FaeI CATG 1 cut(s) 730
FaiI YATR 1 cut(s) 728
FatI CATG 1 cut(s) 726
FauI CCCGC 2 cut(s) 474, 808
FblI GTMKAC 2 cut(s) 213, 369
FokI GGATG 1 cut(s) 962
FriOI GRGCYC 5 cut(s) 591, 726, 734, 812, 914
GlaI GCGC 5 cut(s) 518, 526, 551, 600, 691
GsuI CTGGAG 1 cut(s) 878
HaeII RGCGCY 2 cut(s) 520, 602
HaeIII GGCC 7 cut(s) 42, 86, 506, 672, 724, 732, 827
HgaI GACGC 3 cut(s) 146, 712, 748
HhaI GCGC 5 cut(s) 519, 527, 552, 601, 692
Hin1I GRCGYC 3 cut(s) 599, 614, 704
Hin1II CATG 1 cut(s) 730
Hin6I GCGC 5 cut(s) 517, 525, 550, 599, 690
HinP1I GCGC 5 cut(s) 517, 525, 550, 599, 690
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 5 cut(s) 191, 278, 356, 487, 662
HphI GGTGA 4 cut(s) 94, 139, 196, 254
Hpy166II GTNNAC 2 cut(s) 214, 370
Hpy188I TCNGA 4 cut(s) 661, 697, 885, 909
Hpy188III TCNNGA 2 cut(s) 857, 958
Hpy8I GTNNAC 2 cut(s) 214, 370
HpyAV CCTTC 5 cut(s) 389, 398, 629, 844, 868
HpyCH4III ACNGT 3 cut(s) 172, 202, 941
HpyCH4IV ACGT 3 cut(s) 21, 434, 614
HpyCH4V TGCA 2 cut(s) 648, 747
HpyF10VI GCNNNNNNNGC 9 cut(s) 300, 334, 466, 645, 678, 687, 712, 721, 868
HpyF3I CTNAG 4 cut(s) 282, 324, 364, 908
HpySE526I ACGT 3 cut(s) 21, 434, 614
Hsp92I GRCGYC 3 cut(s) 599, 614, 704
Hsp92II CATG 1 cut(s) 730
HspAI GCGC 5 cut(s) 517, 525, 550, 599, 690
KasI GGCGCC 1 cut(s) 598
KroI GCCGGC 3 cut(s) 82, 86, 595
KroNI GCCGGC 3 cut(s) 84, 88, 597
KspI CCGCGG 1 cut(s) 804
Kzo9I GATC 1 cut(s) 960
LguI GCTCTTC 1 cut(s) 479
LmnI GCTCC 2 cut(s) 267, 859
Lsp1109I GCAGC 6 cut(s) 76, 514, 594, 632, 654, 849
LweI GCATC 1 cut(s) 907
MaeII ACGT 3 cut(s) 21, 434, 614
MaeIII GTNAC 6 cut(s) 145, 179, 202, 221, 260, 888
MalI GATC 1 cut(s) 962
MbiI CCGCTC 1 cut(s) 472
MboI GATC 1 cut(s) 960
MboII GAAGA 8 cut(s) 70, 151, 365, 466, 637, 640, 657, 712
MhlI GDGCHC 6 cut(s) 591, 726, 734, 789, 812, 914
MluCI AATT 3 cut(s) 98, 251, 838
Mly113I GGCGCC 1 cut(s) 599
MlyI GAGTC 5 cut(s) 185, 272, 350, 481, 656
MmeI TCCRAC 2 cut(s) 153, 960
MroNI GCCGGC 3 cut(s) 82, 86, 595
MslI CAYNNNNRTG 1 cut(s) 972
MspA1I CMGCKG 4 cut(s) 67, 219, 645, 803
MspR9I CCNGG 6 cut(s) 498, 534, 721, 829, 914, 915
Mva1269I GAATGC 1 cut(s) 832
MvnI CGCG 4 cut(s) 413, 525, 550, 803
MwoI GCNNNNNNNGC 9 cut(s) 300, 334, 466, 645, 678, 687, 712, 721, 868
NaeI GCCGGC 3 cut(s) 84, 88, 597
NarI GGCGCC 1 cut(s) 599
NciI CCSGG 6 cut(s) 498, 534, 721, 829, 914, 915
NcoI CCATGG 1 cut(s) 726
NdeII GATC 1 cut(s) 960
NgoMIV GCCGGC 3 cut(s) 82, 86, 595
NlaIII CATG 1 cut(s) 730
NlaIV GGNNCC 6 cut(s) 600, 724, 732, 761, 786, 919
NmuCI GTSAC 3 cut(s) 145, 202, 888
NspV TTCGAA 1 cut(s) 836
OliI CACNNNNGTG 1 cut(s) 972
PciSI GCTCTTC 1 cut(s) 479
PcsI WCGNNNNNNNCGW 4 cut(s) 117, 159, 168, 614
PctI GAATGC 1 cut(s) 832
PdiI GCCGGC 3 cut(s) 84, 88, 597
Pfl23II CGTACG 1 cut(s) 309
PflFI GACNNNGTC 2 cut(s) 613, 616
PleI GAGTC 5 cut(s) 185, 272, 350, 481, 656
PluTI GGCGCC 1 cut(s) 602
PpsI GAGTC 5 cut(s) 185, 272, 350, 481, 656
PspEI GGTNACC 1 cut(s) 260
PspLI CGTACG 1 cut(s) 309
PspN4I GGNNCC 6 cut(s) 600, 724, 732, 761, 786, 919
PspOMI GGGCCC 2 cut(s) 722, 730
PstNI CAGNNNCTG 1 cut(s) 907
PsyI GACNNNGTC 2 cut(s) 613, 616
PvuII CAGCTG 3 cut(s) 67, 219, 645
RsaI GTAC 2 cut(s) 311, 794
RsaNI GTAC 2 cut(s) 310, 793
RseI CAYNNNNRTG 1 cut(s) 972
Rsr2I CGGWCCG 1 cut(s) 717
RsrII CGGWCCG 1 cut(s) 717
SacII CCGCGG 1 cut(s) 804
SalI GTCGAC 1 cut(s) 212
SapI GCTCTTC 1 cut(s) 479
Sau3AI GATC 1 cut(s) 960
SchI GAGTC 5 cut(s) 185, 272, 350, 481, 656
ScrFI CCNGG 6 cut(s) 498, 534, 721, 829, 914, 915
SduI GDGCHC 6 cut(s) 591, 726, 734, 789, 812, 914
SfaNI GCATC 1 cut(s) 907
SfoI GGCGCC 1 cut(s) 600
Sfr303I CCGCGG 1 cut(s) 804
SfuI TTCGAA 1 cut(s) 836
SgrBI CCGCGG 1 cut(s) 804
SinI GGWCC 4 cut(s) 73, 543, 717, 760
SmaI CCCGGG 1 cut(s) 915
SmiMI CAYNNNNRTG 1 cut(s) 972
Sse9I AATT 3 cut(s) 98, 251, 838
SspDI GGCGCC 1 cut(s) 598
StyD4I CCNGG 6 cut(s) 496, 532, 719, 827, 912, 913
StyI CCWWGG 1 cut(s) 726
TaaI ACNGT 3 cut(s) 172, 202, 941
TaiI ACGT 3 cut(s) 24, 437, 617
TaqI TCGA 8 cut(s) 36, 108, 120, 162, 213, 341, 836, 988
TasI AATT 3 cut(s) 98, 251, 838
TauI GCSGC 7 cut(s) 93, 460, 472, 642, 806, 868, 871
TscAI CASTG 2 cut(s) 692, 716
TseFI GTSAC 3 cut(s) 145, 202, 888
TseI GCWGC 6 cut(s) 64, 527, 582, 642, 645, 862
Tsp45I GTSAC 3 cut(s) 145, 202, 888
TspGWI ACGGA 2 cut(s) 220, 297
TspMI CCCGGG 1 cut(s) 913
TspRI CASTG 2 cut(s) 692, 716
Tth111I GACNNNGTC 2 cut(s) 613, 616
VpaK11BI GGWCC 4 cut(s) 73, 543, 717, 760
XapI RAATTY 1 cut(s) 838
XmaI CCCGGG 1 cut(s) 913
XmiI GTMKAC 2 cut(s) 213, 369
ZraI GACGTC 1 cut(s) 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.