pycom08g09390

Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
7666377 .. 7667726
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g09390.2

Sequence Viewer

Length: 1131 bp
ATGGAAGCTCCGGAGTACTACAAGAACAGTTTCTGCCCACAATTCACACCCGAAAAGCGCCACTCCTTCGATAGCAGTAACAACAGGACCGCCGTTGGTGGCGGCGGGGACCACTTTATGGTGGAGGACCTCCTTGACTTTTCCAACGACGACGACGCTGTCATTACCGACGGTGGTTGTCCTGCTGCTTTTGACAACGTCATCGGAAACTCCACCGACTCTTCGCCAATTAACGTCATCGACAGCTGCAATTCGTCCTCCTTATCGGGCTCTGAACCCAATTTCGGGCCCCGGAATCTTACCGAGGGCCCCTTCTCCAGTGACCTCTGCGTCCCGTGCGACGATTTGGCTGAGCTCGAATGGCTGTCGAATTTCGTGGAGGAATCATTTTCCAGCGAGGACCTGCAGAAGCTGCAGCTGATATCCGGAATGAAATCCCGACCCGACCAACCGGCCTTCGAGACCCGCCAATTCCAACCGGACCCCACCCGAACCAATATCAATCCTAACGGCAATAACAACCCGATATTCAACCCGGAAGTCTCGGTCCCCGCCAAGGCCCGAAGCAAGCGGTCCAGGGCCGCCCCGTGCAACTGGACCTCCCGCCTCCTCCTCCTCTCCTCGACTCCGGAGCAATCCGACGTCGTCGTTTCAGCAGCGGAGGCAGCGTCTCCATTCCCCCCGCCTTCCAGCACGGGGAAGAAGACGGTGAAGGCGGCACCGAAGAAGAAGGAGAGCCAGGAAGGTTCGGGCGGTGGGCCCGGTGACGGGAGAAAGTGCATGCATTGCGCAACGGACAAGACGCCGCAGTGGCGGACGGGGCCGATGGGTCCGAAGACACTGTGCAACGCGTGCGGTGTTCGATACAAGTCGGGTCGGCTAGTGCCGGAGTACCGACCGGCGGCGAGCCCGACGTTCGTGCTGACGAAGCACTCCAACTCGCACCGTAAGGTGCTGGAATTGCGGCGGCAGAAGGAGATAGTGAGGGCGCAGCAGACTTTCATTCACCAGGTGCCGCCGCCGCAGCATCATCACCACCACCACCATCAGAATATGGTCTTTGACGTATCCAACGGCGGAGATTACTTGATTCATCAGCACGTGGGGCCCGATTTCCGGCAGCTGATCTAG

Protein Analysis

377

Amino Acids

41.27

Weight (kDa)

6.43

Isoelectric Point (pI)

58.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 158, 329
AatII GACGTC 1 cut(s) 645
Acc16I TGCGCA 1 cut(s) 790
Acc36I ACCTGC 1 cut(s) 411
AccB1I GGYRCC 2 cut(s) 718, 1012
AccB7I CCANNNNNTGG 1 cut(s) 118
AccII CGCG 1 cut(s) 851
AccIII TCCGGA 3 cut(s) 10, 425, 628
AcsI RAATTY 1 cut(s) 370
AcvI CACGTG 1 cut(s) 1102
AcyI GRCGYC 2 cut(s) 642, 803
AdeI CACNNNGTG 1 cut(s) 1012
AfaI GTAC 2 cut(s) 17, 893
AfiI CCNNNNNNNGG 9 cut(s) 118, 284, 285, 556, 696, 767, 768, 901, 1116
AflIII ACRYGT 1 cut(s) 849
AgsI TTSAA 1 cut(s) 532
AjnI CCWGG 3 cut(s) 575, 738, 1008
AluBI AGCT 6 cut(s) 8, 246, 355, 412, 418, 1123
AluI AGCT 6 cut(s) 8, 246, 355, 412, 418, 1123
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 3 cut(s) 455, 547, 675
AlwNI CAGNNNCTG 2 cut(s) 33, 412
Aor13HI TCCGGA 3 cut(s) 10, 425, 628
AoxI GGCC 8 cut(s) 287, 307, 453, 558, 579, 758, 821, 1106
ApaI GGGCCC 4 cut(s) 291, 311, 762, 1110
ApeKI GCWGC 9 cut(s) 185, 246, 412, 415, 656, 665, 991, 1024, 1120
ApoI RAATTY 1 cut(s) 370
Asp700I GAANNNNTTC 1 cut(s) 29
AspLEI GCGC 3 cut(s) 60, 791, 991
AsuC2I CCSGG 3 cut(s) 292, 536, 762
AsuHPI GGTGA 4 cut(s) 721, 776, 998, 1025
AvaII GGWCC 9 cut(s) 87, 109, 127, 400, 481, 547, 573, 597, 830
BaeGI GKGCMC 4 cut(s) 291, 311, 762, 1110
BanI GGYRCC 2 cut(s) 718, 1012
BanII GRGCYC 7 cut(s) 272, 291, 311, 357, 762, 911, 1110
BbrPI CACGTG 1 cut(s) 1102
BbsI GAAGAC 2 cut(s) 710, 842
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 8 cut(s) 172, 233, 399, 427, 668, 677, 1003, 1036
BccI CCATC 2 cut(s) 820, 1053
BceAI ACGGC 3 cut(s) 77, 526, 1090
BcgI CGANNNNNNTGC 2 cut(s) 901, 935
BciT130I CCWGG 3 cut(s) 577, 740, 1010
BciVI GTATCC 1 cut(s) 1078
BcnI CCSGG 3 cut(s) 292, 536, 762
BcoDI GTCTC 3 cut(s) 455, 547, 675
BfaI CTAG 2 cut(s) 881, 1129
BfmI CTRYAG 2 cut(s) 404, 413
BfoI RGCGCY 1 cut(s) 61
BfuAI ACCTGC 1 cut(s) 411
BfuI GTATCC 1 cut(s) 1078
BglI GCCNNNNNGGC 1 cut(s) 811
BlpI GCTNAGC 1 cut(s) 351
BmcAI AGTACT 1 cut(s) 17
Bme1390I CCNGG 6 cut(s) 292, 536, 577, 740, 762, 1010
Bme18I GGWCC 9 cut(s) 87, 109, 127, 400, 481, 547, 573, 597, 830
BmrFI CCNGG 6 cut(s) 292, 536, 577, 740, 762, 1010
BmsI GCATC 1 cut(s) 1036
BpiI GAAGAC 2 cut(s) 710, 842
BpmI CTGGAG 1 cut(s) 301
Bpu1102I GCTNAGC 1 cut(s) 351
BpuMI CCSGG 3 cut(s) 292, 536, 762
BsaAI YACGTR 1 cut(s) 1102
BsaHI GRCGYC 2 cut(s) 642, 803
BsaI GGTCTC 1 cut(s) 455
BsaJI CCNNGG 4 cut(s) 290, 303, 555, 576
BsaWI WCCGGW 4 cut(s) 10, 425, 478, 628
BsaXI ACNNNNNCTCC 4 cut(s) 584, 614, 653, 683
Bsc4I CCNNNNNNNGG 9 cut(s) 118, 284, 285, 556, 696, 767, 768, 901, 1116
Bse118I RCCGGY 2 cut(s) 451, 898
Bse1I ACTGG 2 cut(s) 318, 599
Bse3DI GCAATG 1 cut(s) 784
BseAI TCCGGA 3 cut(s) 10, 425, 628
BseBI CCWGG 3 cut(s) 577, 740, 1010
BseDI CCNNGG 4 cut(s) 290, 303, 555, 576
BseLI CCNNNNNNNGG 9 cut(s) 118, 284, 285, 556, 696, 767, 768, 901, 1116
BseMI GCAATG 1 cut(s) 784
BseMII CTCAG 1 cut(s) 342
BseNI ACTGG 2 cut(s) 318, 599
BseRI GAGGAG 4 cut(s) 599, 602, 605, 610
BseSI GKGCMC 4 cut(s) 291, 311, 762, 1110
BseXI GCAGC 8 cut(s) 172, 233, 399, 427, 668, 677, 1003, 1036
Bsh1236I CGCG 1 cut(s) 851
Bsh1285I CGRYCG 1 cut(s) 899
BshFI GGCC 8 cut(s) 289, 309, 455, 560, 581, 760, 823, 1108
BshNI GGYRCC 2 cut(s) 718, 1012
BsiEI CGRYCG 1 cut(s) 899
BsiHKAI GWGCWC 1 cut(s) 357
BslFI GGGAC 3 cut(s) 122, 317, 533
BslI CCNNNNNNNGG 9 cut(s) 118, 284, 285, 556, 696, 767, 768, 901, 1116
BsmAI GTCTC 3 cut(s) 455, 547, 675
BsmBI CGTCTC 1 cut(s) 675
BsmFI GGGAC 3 cut(s) 122, 317, 533
BsnI GGCC 8 cut(s) 289, 309, 455, 560, 581, 760, 823, 1108
Bso31I GGTCTC 1 cut(s) 455
Bsp120I GGGCCC 4 cut(s) 287, 307, 758, 1106
Bsp1286I GDGCHC 7 cut(s) 272, 291, 311, 357, 762, 911, 1110
Bsp13I TCCGGA 3 cut(s) 10, 425, 628
Bsp143I GATC 1 cut(s) 1125
Bsp1720I GCTNAGC 1 cut(s) 351
BspANI GGCC 8 cut(s) 289, 309, 455, 560, 581, 760, 823, 1108
BspCNI CTCAG 1 cut(s) 343
BspEI TCCGGA 3 cut(s) 10, 425, 628
BspFNI CGCG 1 cut(s) 851
BspMAI CTGCAG 2 cut(s) 408, 417
BspMI ACCTGC 1 cut(s) 411
BspT107I GGYRCC 2 cut(s) 718, 1012
BspTNI GGTCTC 1 cut(s) 455
BsrDI GCAATG 1 cut(s) 784
BsrFI RCCGGY 2 cut(s) 451, 898
BsrI ACTGG 2 cut(s) 318, 599
BssAI RCCGGY 2 cut(s) 451, 898
BssECI CCNNGG 4 cut(s) 290, 303, 555, 576
BssMI GATC 1 cut(s) 1125
BssNI GRCGYC 2 cut(s) 642, 803
BssT1I CCWWGG 1 cut(s) 555
Bst2UI CCWGG 3 cut(s) 577, 740, 1010
Bst4CI ACNGT 5 cut(s) 29, 173, 709, 843, 947
Bst6I CTCTTC 1 cut(s) 226
BstACI GRCGYC 2 cut(s) 642, 803
BstAPI GCANNNNNTGC 3 cut(s) 412, 786, 852
BstBAI YACGTR 1 cut(s) 1102
BstC8I GCNNGC 4 cut(s) 569, 782, 853, 907
BstDEI CTNAG 1 cut(s) 351
BstFNI CGCG 1 cut(s) 851
BstH2I RGCGCY 1 cut(s) 61
BstHHI GCGC 3 cut(s) 60, 791, 991
BstKTI GATC 1 cut(s) 1128
BstMAI GTCTC 3 cut(s) 455, 547, 675
BstMBI GATC 1 cut(s) 1125
BstMCI CGRYCG 1 cut(s) 899
BstNI CCWGG 3 cut(s) 577, 740, 1010
BstNSI RCATGY 1 cut(s) 784
BstSCI CCNGG 6 cut(s) 290, 534, 575, 738, 760, 1008
BstSFI CTRYAG 2 cut(s) 404, 413
BstSLI GKGCMC 4 cut(s) 291, 311, 762, 1110
BstUI CGCG 1 cut(s) 851
BstV1I GCAGC 8 cut(s) 172, 233, 399, 427, 668, 677, 1003, 1036
BstV2I GAAGAC 2 cut(s) 710, 842
BsuI GTATCC 1 cut(s) 1078
BsuRI GGCC 8 cut(s) 289, 309, 455, 560, 581, 760, 823, 1108
BtsI GCAGTG 1 cut(s) 815
BtsIMutI CAGTG 3 cut(s) 325, 815, 839
BveI ACCTGC 1 cut(s) 411
Cac8I GCNNGC 4 cut(s) 569, 782, 853, 907
CaiI CAGNNNCTG 2 cut(s) 33, 412
CfoI GCGC 3 cut(s) 60, 791, 991
Cfr10I RCCGGY 2 cut(s) 451, 898
CseI GACGC 4 cut(s) 164, 319, 657, 811
CsiI ACCWGGT 1 cut(s) 1008
Csp6I GTAC 2 cut(s) 16, 892
CviAII CATG 1 cut(s) 781
CviQI GTAC 2 cut(s) 16, 892
DdeI CTNAG 1 cut(s) 351
DpnI GATC 1 cut(s) 1127
DpnII GATC 1 cut(s) 1125
DraIII CACNNNGTG 1 cut(s) 1012
DrdI GACNNNNNNGTC 2 cut(s) 158, 329
DseDI GACNNNNNNGTC 2 cut(s) 158, 329
Eam1104I CTCTTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 226
EciI GGCGGA 2 cut(s) 829, 1092
Ecl136II GAGCTC 1 cut(s) 355
Eco130I CCWWGG 1 cut(s) 555
Eco24I GRGCYC 7 cut(s) 272, 291, 311, 357, 762, 911, 1110
Eco31I GGTCTC 1 cut(s) 455
Eco32I GATATC 1 cut(s) 423
Eco47I GGWCC 9 cut(s) 87, 109, 127, 400, 481, 547, 573, 597, 830
Eco53kI GAGCTC 1 cut(s) 355
Eco72I CACGTG 1 cut(s) 1102
EcoICRI GAGCTC 1 cut(s) 355
EcoO109I RGGNCCY 6 cut(s) 127, 288, 307, 308, 400, 1106
EcoRII CCWGG 3 cut(s) 575, 738, 1008
EcoRV GATATC 1 cut(s) 423
EcoT14I CCWWGG 1 cut(s) 555
EcoT22I ATGCAT 1 cut(s) 786
EcoT38I GRGCYC 7 cut(s) 272, 291, 311, 357, 762, 911, 1110
ErhI CCWWGG 1 cut(s) 555
Esp3I CGTCTC 1 cut(s) 675
FaeI CATG 1 cut(s) 784
FaiI YATR 3 cut(s) 119, 782, 1055
FaqI GGGAC 3 cut(s) 122, 317, 533
FatI CATG 1 cut(s) 780
FauI CCCGC 5 cut(s) 98, 473, 559, 611, 690
FriOI GRGCYC 7 cut(s) 272, 291, 311, 357, 762, 911, 1110
FspBI CTAG 2 cut(s) 881, 1129
FspI TGCGCA 1 cut(s) 790
GlaI GCGC 3 cut(s) 59, 790, 990
GsuI CTGGAG 1 cut(s) 301
HaeII RGCGCY 1 cut(s) 61
HaeIII GGCC 8 cut(s) 289, 309, 455, 560, 581, 760, 823, 1108
HgaI GACGC 4 cut(s) 164, 319, 657, 811
HhaI GCGC 3 cut(s) 60, 791, 991
Hin1I GRCGYC 2 cut(s) 642, 803
Hin1II CATG 1 cut(s) 784
Hin6I GCGC 3 cut(s) 58, 789, 989
HinP1I GCGC 3 cut(s) 58, 789, 989
HinfI GANTC 5 cut(s) 218, 295, 383, 625, 1090
HphI GGTGA 4 cut(s) 721, 776, 998, 1025
Hpy188I TCNGA 5 cut(s) 206, 274, 640, 834, 1050
Hpy188III TCNNGA 5 cut(s) 11, 426, 438, 460, 629
Hpy99I CGWCG 9 cut(s) 152, 155, 158, 173, 344, 644, 647, 650, 916
HpyAV CCTTC 8 cut(s) 76, 322, 466, 696, 706, 724, 737, 967
HpyCH4III ACNGT 5 cut(s) 29, 173, 709, 843, 947
HpyCH4IV ACGT 6 cut(s) 198, 234, 642, 914, 1065, 1101
HpyCH4V TGCA 7 cut(s) 249, 406, 415, 591, 780, 784, 846
HpyF3I CTNAG 1 cut(s) 351
HpySE526I ACGT 6 cut(s) 198, 234, 642, 914, 1065, 1101
Hsp92I GRCGYC 2 cut(s) 642, 803
Hsp92II CATG 1 cut(s) 784
HspAI GCGC 3 cut(s) 58, 789, 989
Kpn2I TCCGGA 3 cut(s) 10, 425, 628
Kzo9I GATC 1 cut(s) 1125
LmnI GCTCC 2 cut(s) 13, 631
Lsp1109I GCAGC 8 cut(s) 172, 233, 399, 427, 668, 677, 1003, 1036
LweI GCATC 1 cut(s) 1036
MabI ACCWGGT 1 cut(s) 1008
MaeI CTAG 2 cut(s) 881, 1129
MaeII ACGT 6 cut(s) 198, 234, 642, 914, 1065, 1101
MaeIII GTNAC 3 cut(s) 77, 320, 764
MalI GATC 1 cut(s) 1127
MboI GATC 1 cut(s) 1125
MboII GAAGA 6 cut(s) 213, 712, 715, 736, 739, 847
MhlI GDGCHC 7 cut(s) 272, 291, 311, 357, 762, 911, 1110
MluCI AATT 7 cut(s) 41, 228, 250, 280, 370, 470, 959
MluI ACGCGT 1 cut(s) 849
MlyI GAGTC 2 cut(s) 212, 619
MmeI TCCRAC 5 cut(s) 168, 499, 663, 960, 1095
Mph1103I ATGCAT 1 cut(s) 786
MroI TCCGGA 3 cut(s) 10, 425, 628
MroXI GAANNNNTTC 1 cut(s) 29
MseI TTAA 1 cut(s) 231
MspA1I CMGCKG 4 cut(s) 246, 418, 659, 1123
MspR9I CCNGG 6 cut(s) 292, 536, 577, 740, 762, 1010
MvaI CCWGG 3 cut(s) 577, 740, 1010
MvnI CGCG 1 cut(s) 851
NciI CCSGG 3 cut(s) 292, 536, 762
NdeII GATC 1 cut(s) 1125
NlaIII CATG 1 cut(s) 784
NmuCI GTSAC 2 cut(s) 320, 764
NsbI TGCGCA 1 cut(s) 790
NsiI ATGCAT 1 cut(s) 786
NspI RCATGY 1 cut(s) 784
PaeI GCATGC 1 cut(s) 784
PcsI WCGNNNNNNNCGW 1 cut(s) 1107
PdmI GAANNNNTTC 1 cut(s) 29
PfeI GAWTC 3 cut(s) 295, 383, 1090
PflFI GACNNNGTC 3 cut(s) 158, 197, 644
PflMI CCANNNNNTGG 1 cut(s) 118
PleI GAGTC 2 cut(s) 212, 619
PmaCI CACGTG 1 cut(s) 1102
PmlI CACGTG 1 cut(s) 1102
PpsI GAGTC 2 cut(s) 212, 619
Ppu21I YACGTR 1 cut(s) 1102
PpuMI RGGWCCY 2 cut(s) 127, 400
Psp124BI GAGCTC 1 cut(s) 357
Psp5II RGGWCCY 2 cut(s) 127, 400
Psp6I CCWGG 3 cut(s) 575, 738, 1008
PspCI CACGTG 1 cut(s) 1102
PspGI CCWGG 3 cut(s) 575, 738, 1008
PspOMI GGGCCC 4 cut(s) 287, 307, 758, 1106
PspPPI RGGWCCY 2 cut(s) 127, 400
PstI CTGCAG 2 cut(s) 408, 417
PstNI CAGNNNCTG 2 cut(s) 33, 412
PsyI GACNNNGTC 3 cut(s) 158, 197, 644
PvuII CAGCTG 3 cut(s) 246, 418, 1123
RsaI GTAC 2 cut(s) 17, 893
RsaNI GTAC 2 cut(s) 16, 892
SacI GAGCTC 1 cut(s) 357
SaqAI TTAA 1 cut(s) 231
Sau3AI GATC 1 cut(s) 1125
ScaI AGTACT 1 cut(s) 17
SchI GAGTC 2 cut(s) 212, 619
ScrFI CCNGG 6 cut(s) 292, 536, 577, 740, 762, 1010
SduI GDGCHC 7 cut(s) 272, 291, 311, 357, 762, 911, 1110
SexAI ACCWGGT 1 cut(s) 1008
SfaNI GCATC 1 cut(s) 1036
SfcI CTRYAG 2 cut(s) 404, 413
SinI GGWCC 9 cut(s) 87, 109, 127, 400, 481, 547, 573, 597, 830
SphI GCATGC 1 cut(s) 784
Sse9I AATT 7 cut(s) 41, 228, 250, 280, 370, 470, 959
SspMI CTAG 2 cut(s) 881, 1129
SstI GAGCTC 1 cut(s) 357
StyD4I CCNGG 6 cut(s) 290, 534, 575, 738, 760, 1008
StyI CCWWGG 1 cut(s) 555
TaaI ACNGT 5 cut(s) 29, 173, 709, 843, 947
TaiI ACGT 6 cut(s) 201, 237, 645, 917, 1068, 1104
TaqI TCGA 7 cut(s) 69, 240, 357, 368, 459, 623, 862
TaqII GACCGA 1 cut(s) 535
TasI AATT 7 cut(s) 41, 228, 250, 280, 370, 470, 959
TatI WGTACW 1 cut(s) 15
TfiI GAWTC 3 cut(s) 295, 383, 1090
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 3 cut(s) 325, 815, 846
TseFI GTSAC 2 cut(s) 320, 764
TseI GCWGC 9 cut(s) 185, 246, 412, 415, 656, 665, 991, 1024, 1120
Tsp45I GTSAC 2 cut(s) 320, 764
TspDTI ATGAA 3 cut(s) 446, 991, 1082
TspGWI ACGGA 1 cut(s) 809
TspRI CASTG 3 cut(s) 325, 815, 846
Tth111I GACNNNGTC 3 cut(s) 158, 197, 644
Van91I CCANNNNNTGG 1 cut(s) 118
VpaK11BI GGWCC 9 cut(s) 87, 109, 127, 400, 481, 547, 573, 597, 830
XapI RAATTY 1 cut(s) 370
XceI RCATGY 1 cut(s) 784
XmnI GAANNNNTTC 1 cut(s) 29
XspI CTAG 2 cut(s) 881, 1129
ZraI GACGTC 1 cut(s) 643
ZrmI AGTACT 1 cut(s) 17
Zsp2I ATGCAT 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.