MD09G1205600.v1.1

Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
19625997 .. 19627631
1635 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1205600.v1.1.491

Sequence Viewer

Length: 993 bp
ATGGAACTGCCCGAGTTCTACCGCGGCGGCTACTTCAACGGCGGAGCCGCCAAGTTATCACCGGGAGACAAGCCTACCGGCGGTGACTTCACCGTCGAAGACCTACTCGACTTCTCTAACGAAGACCCCTTCATCACCACTGCCGCTGACGGCGGAAGCTTCCATAACCCCGCCGCAGAATCCTCCGCGGTCACCGCCGTTGACAGCTGTAATTCCTCTGTTTCTGGCGGAGAGCCTCATTTCTCCGGCAACCGGAGCTTCGACGACTCCCAGTTCTCCGGCGACCTCTGCGTTCCGTGCGATGACTTGGCGGAGCTGGAATGGCTGTCGAACTTTGTGGAGGATTCCTTCTCAGCAGACAAGGATTTACAGTCTCTCCAGTTCCTCTCCGTAAGTAACACAACGAAACCTCAAACCCCCGAAACGTGTTCATCCTCCGAAACGCCTCAAAACGCACTGCTTTTCCCCTCCGAAACGCCTCTCCCGGGCAAGGCCCGAAGCAAGCGCTCACGCGCCGCCCCCGGGGACTGGTCCACGCGCCTACTCCACCTCATTACTCCCAACAATAACACCAAACCTCCCAAAACGACATTGCCTAAGAAGAGAGATGCTGCCATTGGTGCTGGCAATTCAAATTCAGGTTCGGACTCTTCAGGCCGCAAATGCCTCCATTGTGCAGCAGAAAAGACTCCGCAATGGCGGACTGGGCCCCTGGGCCCTAAAACTCTTTGCAACGCTTGCGGGGTCCGGTATAAGTCGGGTCGACTTGTTCCCGAGTACCGGCCCGCCGCAAGCCCGACTTTCATGTCGGCTAGGCACTCCAATTCGCATAGGAAGGTTTTGGAGCTCCGAAGACAGAAGGAGGTCCAGAGATCACATCATCATCATCATCAATATCTTAGTCCAGGTTCCATTTTTGGTGTATCCAACGGTGGTCATGATGACTACTTGATCCATCATCATAACGTGAATGATTTTCGGCAGATGATGTAG

Protein Analysis

331

Amino Acids

35.9

Weight (kDa)

6.56

Isoelectric Point (pI)

49.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GATA PF00320 222 - 256 6.5e-14 GATA zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 92, 805
AccI GTMKAC 1 cut(s) 763
AccII CGCG 4 cut(s) 24, 188, 513, 538
AclWI GGATC 1 cut(s) 946
AcsI RAATTY 1 cut(s) 634
AcuI CTGAAG 1 cut(s) 636
AfaI GTAC 1 cut(s) 779
AfeI AGCGCT 1 cut(s) 506
AfiI CCNNNNNNNGG 7 cut(s) 80, 252, 485, 490, 522, 528, 780
AflIII ACRYGT 1 cut(s) 425
AgsI TTSAA 2 cut(s) 37, 633
AjnI CCWGG 2 cut(s) 711, 904
AluBI AGCT 5 cut(s) 159, 207, 258, 316, 847
AluI AGCT 5 cut(s) 159, 207, 258, 316, 847
Alw21I GWGCWC 1 cut(s) 849
Alw26I GTCTC 2 cut(s) 60, 378
AlwI GGATC 1 cut(s) 946
Ama87I CYCGRG 4 cut(s) 11, 484, 521, 773
Aor51HI AGCGCT 1 cut(s) 506
AoxI GGCC 5 cut(s) 492, 655, 707, 715, 782
ApaI GGGCCC 2 cut(s) 711, 719
ApeKI GCWGC 2 cut(s) 611, 677
ApoI RAATTY 1 cut(s) 634
AspLEI GCGC 3 cut(s) 507, 515, 540
AspS9I GGNCC 9 cut(s) 493, 531, 707, 708, 715, 716, 745, 783, 865
AsuC2I CCSGG 5 cut(s) 63, 485, 486, 522, 523
AsuHPI GGTGA 5 cut(s) 51, 82, 95, 127, 184
AvaI CYCGRG 4 cut(s) 11, 484, 521, 773
AvaII GGWCC 3 cut(s) 531, 745, 865
BaeGI GKGCMC 2 cut(s) 711, 719
BanII GRGCYC 3 cut(s) 711, 719, 849
BbsI GAAGAC 3 cut(s) 105, 129, 859
Bbv12I GWGCWC 1 cut(s) 849
BbvI GCAGC 2 cut(s) 598, 689
BccI CCATC 1 cut(s) 963
BceAI ACGGC 3 cut(s) 55, 166, 182
BciT130I CCWGG 2 cut(s) 713, 906
BciVI GTATCC 1 cut(s) 934
BcnI CCSGG 5 cut(s) 63, 485, 486, 522, 523
BcoDI GTCTC 2 cut(s) 60, 378
BfaI CTAG 1 cut(s) 813
BfoI RGCGCY 1 cut(s) 508
BfuI GTATCC 1 cut(s) 934
Bme1390I CCNGG 7 cut(s) 63, 485, 486, 522, 523, 713, 906
Bme18I GGWCC 3 cut(s) 531, 745, 865
BmeT110I CYCGRG 4 cut(s) 11, 484, 521, 773
BmgT120I GGNCC 9 cut(s) 493, 531, 707, 708, 715, 716, 745, 783, 865
BmiI GGNNCC 6 cut(s) 46, 709, 710, 717, 746, 910
BmrFI CCNGG 7 cut(s) 63, 485, 486, 522, 523, 713, 906
BmrI ACTGGG 2 cut(s) 265, 714
BmsI GCATC 1 cut(s) 598
BmuI ACTGGG 2 cut(s) 265, 714
BpiI GAAGAC 3 cut(s) 105, 129, 859
BpmI CTGGAG 1 cut(s) 362
BpuMI CCSGG 5 cut(s) 63, 485, 486, 522, 523
BsaJI CCNNGG 8 cut(s) 22, 186, 484, 520, 521, 522, 711, 712
BsaWI WCCGGW 2 cut(s) 252, 747
BsaXI ACNNNNNCTCC 4 cut(s) 360, 390, 562, 592
Bsc4I CCNNNNNNNGG 7 cut(s) 80, 252, 485, 490, 522, 528, 780
Bse118I RCCGGY 2 cut(s) 77, 780
Bse1I ACTGG 4 cut(s) 271, 379, 533, 709
Bse3DI GCAATG 2 cut(s) 590, 701
BseBI CCWGG 2 cut(s) 713, 906
BseDI CCNNGG 8 cut(s) 22, 186, 484, 520, 521, 522, 711, 712
BseGI GGATG 1 cut(s) 431
BseLI CCNNNNNNNGG 7 cut(s) 80, 252, 485, 490, 522, 528, 780
BseMI GCAATG 2 cut(s) 590, 701
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 4 cut(s) 271, 379, 533, 709
BseSI GKGCMC 2 cut(s) 711, 719
BseXI GCAGC 2 cut(s) 598, 689
BsgI GTGCAG 1 cut(s) 696
Bsh1236I CGCG 4 cut(s) 24, 188, 513, 538
BshFI GGCC 5 cut(s) 494, 657, 709, 717, 784
BsiHKAI GWGCWC 1 cut(s) 849
BsiHKCI CYCGRG 4 cut(s) 11, 484, 521, 773
BsiSI CCGG 9 cut(s) 62, 78, 246, 253, 279, 485, 522, 748, 781
BslFI GGGAC 1 cut(s) 539
BslI CCNNNNNNNGG 7 cut(s) 80, 252, 485, 490, 522, 528, 780
BsmAI GTCTC 2 cut(s) 60, 378
BsmFI GGGAC 1 cut(s) 539
BsnI GGCC 5 cut(s) 494, 657, 709, 717, 784
BsoBI CYCGRG 4 cut(s) 11, 484, 521, 773
Bsp120I GGGCCC 2 cut(s) 707, 715
Bsp1286I GDGCHC 3 cut(s) 711, 719, 849
Bsp143I GATC 2 cut(s) 872, 951
BspANI GGCC 5 cut(s) 494, 657, 709, 717, 784
BspCNI CTCAG 1 cut(s) 365
BspFNI CGCG 4 cut(s) 24, 188, 513, 538
BspHI TCATGA 1 cut(s) 937
BspLI GGNNCC 6 cut(s) 46, 709, 710, 717, 746, 910
BspPI GGATC 1 cut(s) 946
BsrDI GCAATG 2 cut(s) 590, 701
BsrFI RCCGGY 2 cut(s) 77, 780
BsrI ACTGG 4 cut(s) 271, 379, 533, 709
BssAI RCCGGY 2 cut(s) 77, 780
BssECI CCNNGG 8 cut(s) 22, 186, 484, 520, 521, 522, 711, 712
BssMI GATC 2 cut(s) 872, 951
Bst2UI CCWGG 2 cut(s) 713, 906
Bst4CI ACNGT 3 cut(s) 94, 372, 932
Bst6I CTCTTC 2 cut(s) 596, 655
BstAPI GCANNNNNTGC 1 cut(s) 738
BstC8I GCNNGC 5 cut(s) 503, 625, 739, 786, 793
BstDEI CTNAG 3 cut(s) 352, 597, 899
BstDSI CCRYGG 2 cut(s) 22, 186
BstEII GGTNACC 1 cut(s) 190
BstF5I GGATG 1 cut(s) 431
BstFNI CGCG 4 cut(s) 24, 188, 513, 538
BstH2I RGCGCY 1 cut(s) 508
BstHHI GCGC 3 cut(s) 507, 515, 540
BstKTI GATC 2 cut(s) 875, 954
BstMAI GTCTC 2 cut(s) 60, 378
BstMBI GATC 2 cut(s) 872, 951
BstMWI GCNNNNNNNGC 9 cut(s) 194, 255, 288, 297, 322, 620, 663, 706, 738
BstNI CCWGG 2 cut(s) 713, 906
BstPI GGTNACC 1 cut(s) 190
BstSCI CCNGG 7 cut(s) 61, 483, 484, 520, 521, 711, 904
BstSLI GKGCMC 2 cut(s) 711, 719
BstUI CGCG 4 cut(s) 24, 188, 513, 538
BstV1I GCAGC 2 cut(s) 598, 689
BstV2I GAAGAC 3 cut(s) 105, 129, 859
BsuI GTATCC 1 cut(s) 934
BsuRI GGCC 5 cut(s) 494, 657, 709, 717, 784
BtgI CCRYGG 2 cut(s) 22, 186
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 1 cut(s) 431
BtsI GCAGTG 2 cut(s) 138, 455
BtsIMutI CAGTG 2 cut(s) 138, 455
Cac8I GCNNGC 5 cut(s) 503, 625, 739, 786, 793
CciI TCATGA 1 cut(s) 937
CfoI GCGC 3 cut(s) 507, 515, 540
Cfr10I RCCGGY 2 cut(s) 77, 780
Cfr13I GGNCC 9 cut(s) 493, 531, 707, 708, 715, 716, 745, 783, 865
Cfr42I CCGCGG 2 cut(s) 25, 189
Cfr9I CCCGGG 2 cut(s) 484, 521
Csp6I GTAC 1 cut(s) 778
CviAII CATG 2 cut(s) 805, 938
CviQI GTAC 1 cut(s) 778
DdeI CTNAG 3 cut(s) 352, 597, 899
DpnI GATC 2 cut(s) 874, 953
DpnII GATC 2 cut(s) 872, 951
DrdI GACNNNNNNGTC 2 cut(s) 92, 805
DseDI GACNNNNNNGTC 2 cut(s) 92, 805
Eam1104I CTCTTC 2 cut(s) 596, 655
EarI CTCTTC 2 cut(s) 596, 655
EciI GGCGGA 5 cut(s) 57, 168, 243, 326, 715
Ecl136II GAGCTC 1 cut(s) 847
Eco24I GRGCYC 3 cut(s) 711, 719, 849
Eco47I GGWCC 3 cut(s) 531, 745, 865
Eco47III AGCGCT 1 cut(s) 506
Eco53kI GAGCTC 1 cut(s) 847
Eco57I CTGAAG 1 cut(s) 636
Eco88I CYCGRG 4 cut(s) 11, 484, 521, 773
Eco91I GGTNACC 1 cut(s) 190
EcoICRI GAGCTC 1 cut(s) 847
EcoO109I RGGNCCY 2 cut(s) 708, 716
EcoO65I GGTNACC 1 cut(s) 190
EcoRII CCWGG 2 cut(s) 711, 904
EcoT38I GRGCYC 3 cut(s) 711, 719, 849
FaeI CATG 2 cut(s) 808, 941
FaiI YATR 6 cut(s) 165, 753, 806, 831, 939, 963
FalI AAGNNNNNCTT 2 cut(s) 784, 816
FaqI GGGAC 1 cut(s) 539
FatI CATG 2 cut(s) 804, 937
FauI CCCGC 3 cut(s) 178, 734, 793
FblI GTMKAC 1 cut(s) 763
FokI GGATG 1 cut(s) 418
FriOI GRGCYC 3 cut(s) 711, 719, 849
FspBI CTAG 1 cut(s) 813
GlaI GCGC 3 cut(s) 506, 514, 539
GsuI CTGGAG 1 cut(s) 362
HaeII RGCGCY 1 cut(s) 508
HaeIII GGCC 5 cut(s) 494, 657, 709, 717, 784
HapII CCGG 9 cut(s) 62, 78, 246, 253, 279, 485, 522, 748, 781
HhaI GCGC 3 cut(s) 507, 515, 540
Hin1II CATG 2 cut(s) 808, 941
Hin6I GCGC 3 cut(s) 505, 513, 538
HinP1I GCGC 3 cut(s) 505, 513, 538
HincII GTYRAC 2 cut(s) 202, 764
HindII GTYRAC 2 cut(s) 202, 764
HindIII AAGCTT 1 cut(s) 157
HinfI GANTC 5 cut(s) 179, 266, 344, 647, 688
HpaII CCGG 9 cut(s) 62, 78, 246, 253, 279, 485, 522, 748, 781
HphI GGTGA 5 cut(s) 51, 82, 95, 127, 184
Hpy166II GTNNAC 3 cut(s) 202, 534, 764
Hpy188I TCNGA 4 cut(s) 439, 472, 646, 851
Hpy188III TCNNGA 3 cut(s) 773, 868, 938
Hpy8I GTNNAC 3 cut(s) 202, 534, 764
Hpy99I CGWCG 2 cut(s) 98, 266
HpyAV CCTTC 4 cut(s) 139, 358, 829, 853
HpyCH4III ACNGT 3 cut(s) 94, 372, 932
HpyCH4IV ACGT 2 cut(s) 425, 966
HpyCH4V TGCA 2 cut(s) 677, 732
HpyF10VI GCNNNNNNNGC 9 cut(s) 194, 255, 288, 297, 322, 620, 663, 706, 738
HpyF3I CTNAG 3 cut(s) 352, 597, 899
HpySE526I ACGT 2 cut(s) 425, 966
Hsp92II CATG 2 cut(s) 808, 941
HspAI GCGC 3 cut(s) 505, 513, 538
KspI CCGCGG 2 cut(s) 25, 189
Kzo9I GATC 2 cut(s) 872, 951
LmnI GCTCC 5 cut(s) 44, 255, 313, 844, 852
Lsp1109I GCAGC 2 cut(s) 598, 689
LweI GCATC 1 cut(s) 598
MaeI CTAG 1 cut(s) 813
MaeII ACGT 2 cut(s) 425, 966
MaeIII GTNAC 3 cut(s) 83, 190, 395
MalI GATC 2 cut(s) 874, 953
MboI GATC 2 cut(s) 872, 951
MboII GAAGA 5 cut(s) 110, 134, 613, 642, 864
MhlI GDGCHC 3 cut(s) 711, 719, 849
MluCI AATT 4 cut(s) 211, 628, 634, 823
MlyI GAGTC 3 cut(s) 260, 641, 682
MmeI TCCRAC 1 cut(s) 951
MspA1I CMGCKG 4 cut(s) 24, 146, 188, 207
MspI CCGG 9 cut(s) 62, 78, 246, 253, 279, 485, 522, 748, 781
MspR9I CCNGG 7 cut(s) 63, 485, 486, 522, 523, 713, 906
MvaI CCWGG 2 cut(s) 713, 906
MvnI CGCG 4 cut(s) 24, 188, 513, 538
MwoI GCNNNNNNNGC 9 cut(s) 194, 255, 288, 297, 322, 620, 663, 706, 738
NciI CCSGG 5 cut(s) 63, 485, 486, 522, 523
NdeII GATC 2 cut(s) 872, 951
NlaIII CATG 2 cut(s) 808, 941
NlaIV GGNNCC 6 cut(s) 46, 709, 710, 717, 746, 910
NmuCI GTSAC 2 cut(s) 83, 190
PagI TCATGA 1 cut(s) 937
PasI CCCWGGG 1 cut(s) 712
PfeI GAWTC 2 cut(s) 179, 344
PleI GAGTC 3 cut(s) 260, 641, 682
PpsI GAGTC 3 cut(s) 260, 641, 682
Psp124BI GAGCTC 1 cut(s) 849
Psp6I CCWGG 2 cut(s) 711, 904
PspEI GGTNACC 1 cut(s) 190
PspGI CCWGG 2 cut(s) 711, 904
PspN4I GGNNCC 6 cut(s) 46, 709, 710, 717, 746, 910
PspOMI GGGCCC 2 cut(s) 707, 715
PspPI GGNCC 9 cut(s) 493, 531, 707, 708, 715, 716, 745, 783, 865
PvuII CAGCTG 1 cut(s) 207
RsaI GTAC 1 cut(s) 779
RsaNI GTAC 1 cut(s) 778
SacI GAGCTC 1 cut(s) 849
SacII CCGCGG 2 cut(s) 25, 189
SalI GTCGAC 1 cut(s) 762
Sau3AI GATC 2 cut(s) 872, 951
Sau96I GGNCC 9 cut(s) 493, 531, 707, 708, 715, 716, 745, 783, 865
SchI GAGTC 3 cut(s) 260, 641, 682
ScrFI CCNGG 7 cut(s) 63, 485, 486, 522, 523, 713, 906
SduI GDGCHC 3 cut(s) 711, 719, 849
SfaNI GCATC 1 cut(s) 598
Sfr303I CCGCGG 2 cut(s) 25, 189
SgrBI CCGCGG 2 cut(s) 25, 189
SinI GGWCC 3 cut(s) 531, 745, 865
SmaI CCCGGG 2 cut(s) 486, 523
Sse9I AATT 4 cut(s) 211, 628, 634, 823
SspMI CTAG 1 cut(s) 813
SstI GAGCTC 1 cut(s) 849
StyD4I CCNGG 7 cut(s) 61, 483, 484, 520, 521, 711, 904
TaaI ACNGT 3 cut(s) 94, 372, 932
TaiI ACGT 2 cut(s) 428, 969
TaqI TCGA 5 cut(s) 96, 108, 261, 329, 763
TasI AATT 4 cut(s) 211, 628, 634, 823
TauI GCSGC 8 cut(s) 27, 30, 50, 146, 176, 518, 660, 791
TfiI GAWTC 2 cut(s) 179, 344
TscAI CASTG 2 cut(s) 145, 462
TseFI GTSAC 2 cut(s) 83, 190
TseI GCWGC 2 cut(s) 611, 677
Tsp45I GTSAC 2 cut(s) 83, 190
TspDTI ATGAA 3 cut(s) 121, 420, 793
TspGWI ACGGA 2 cut(s) 285, 379
TspMI CCCGGG 2 cut(s) 484, 521
TspRI CASTG 2 cut(s) 145, 462
VpaK11BI GGWCC 3 cut(s) 531, 745, 865
XapI RAATTY 1 cut(s) 634
XmaI CCCGGG 2 cut(s) 484, 521
XmiI GTMKAC 1 cut(s) 763
XspI CTAG 1 cut(s) 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.