Prupe.3G060900_v2.0.a1

Transcriptional activator that specifically binds 5'- GATA-3' or 5'-GAT-3' motifs within gene promoters

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
4380903 .. 4382686
1784 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G060900.1

Sequence Viewer

Length: 972 bp
ATGGAACTGCCGGAATTCTACCTCGGCGGCTACTTCGACGCCGGAGCCTCCGACTTTCTGCCGGAGAAGAAGCCCGCCGCAGCCGGCGACCAATTCACCGTCGACGACCTCCTCGACTTCTCCAACGAAGACGCTCTAGTCGCCGACGGCGGTTTCTTGGACGCCGCTGCCGATTCCTCCGCCATCACCGCCGTAGACAGCTGCAATTCCTCGGTTTCCGGGGGAGAGCCTCAGTTCTCCGGCAACCGGAACTTCGGTGACTCTCAGTTCTCCGGCGACCTTTGCGTTCCGCACGACGACTTGGCGGAGCTAGAATGGCTATCGAACTTTGTGGAAGACTCCTTCTCAGCAGAGAAGGACTTGCAAGCTCTCCAATTCCTGTCCATGACCACAACCAAACCTCAAACCCCCGAAACGTCCTCGTCCTCTGAAACGAATCAAAACGCACCGCTTTTCCACCCCGAAACGCCTCTCCCGGGAAAAGCCCGAAGCAAGCGCTCACGCGCTGCCCCCGGAGACTGGTCCACGCGCCTCCTCCACCTCGTCACTCCCAATGACACCATCAAGCCTCCCAAAACGACAACGTGTAAGAAGAAAGATGGTATTGGTGGCAATTCGAACTCGGGTTCCGACACTTCAGGCCGGAAATGCCTCCATTGCGCGGCAGAAAAGACCCCGCAATGGCGAACTGGCCCTATGGGCCCAAAAACACTTTGTAACGCGTGCGGAGTTCGCTATAAGTCCGGCCGGCTTGTGCCCGAGTACCGGCCCGCCGCGAGCCCCACTTTTGTGTCGGCTAGGCATTCCAATTCGCACAGGAAGGTTTTGGAGCTCCGGAGACAAAAGGAGGTCCATAGATCACATCAGCATCAGTTTCTTAGTAAAAGTTCCATTTTTGGCGTATCCAACGGTGGTCATGATGAGTACTTGATCCGTCACCATAGCGTTAACGATTTCCGGCAGATGATGTAG

Protein Analysis

324

Amino Acids

35.24

Weight (kDa)

6.18

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 137
AccI GTMKAC 2 cut(s) 102, 195
AccII CGCG 5 cut(s) 504, 529, 662, 722, 776
AccIII TCCGGA 1 cut(s) 834
AclWI GGATC 1 cut(s) 925
AcoI YGGCCR 1 cut(s) 745
AcsI RAATTY 1 cut(s) 14
AcuI CTGAAG 1 cut(s) 621
AcyI GRCGYC 2 cut(s) 39, 162
AfaI GTAC 2 cut(s) 764, 926
AfeI AGCGCT 1 cut(s) 497
AfiI CCNNNNNNNGG 6 cut(s) 246, 476, 519, 661, 681, 765
AflIII ACRYGT 2 cut(s) 584, 720
AleI CACNNNNGTG 1 cut(s) 788
AloI GAACNNNNNNTCC 2 cut(s) 611, 643
AluBI AGCT 4 cut(s) 201, 310, 368, 832
AluI AGCT 4 cut(s) 201, 310, 368, 832
Alw21I GWGCWC 1 cut(s) 834
Alw26I GTCTC 2 cut(s) 510, 832
AlwI GGATC 1 cut(s) 925
Ama87I CYCGRG 3 cut(s) 475, 622, 758
Aor13HI TCCGGA 1 cut(s) 834
Aor51HI AGCGCT 1 cut(s) 497
AoxI GGCC 5 cut(s) 640, 691, 700, 745, 767
ApaI GGGCCC 1 cut(s) 704
ApeKI GCWGC 4 cut(s) 80, 167, 201, 506
ApoI RAATTY 1 cut(s) 14
AspLEI GCGC 4 cut(s) 498, 506, 531, 662
AspS9I GGNCC 6 cut(s) 522, 692, 700, 701, 768, 850
AsuC2I CCSGG 4 cut(s) 220, 476, 477, 513
AsuHPI GGTGA 4 cut(s) 88, 178, 269, 929
AsuII TTCGAA 1 cut(s) 617
AvaI CYCGRG 3 cut(s) 475, 622, 758
AvaII GGWCC 2 cut(s) 522, 850
BaeGI GKGCMC 2 cut(s) 704, 759
BanII GRGCYC 3 cut(s) 704, 782, 834
BbsI GAAGAC 2 cut(s) 135, 342
Bbv12I GWGCWC 1 cut(s) 834
BbvI GCAGC 4 cut(s) 92, 154, 188, 493
BccI CCATC 3 cut(s) 191, 569, 593
BceAI ACGGC 2 cut(s) 163, 176
BciVI GTATCC 1 cut(s) 913
BcnI CCSGG 4 cut(s) 220, 476, 477, 513
BcoDI GTCTC 2 cut(s) 510, 832
BfaI CTAG 3 cut(s) 137, 311, 798
BfoI RGCGCY 1 cut(s) 499
BfuI GTATCC 1 cut(s) 913
BglI GCCNNNNNGGC 1 cut(s) 699
BisI GCNGC 9 cut(s) 28, 78, 81, 165, 168, 202, 507, 663, 774
BlsI GCNGC 9 cut(s) 29, 79, 82, 166, 169, 203, 508, 664, 775
BmcAI AGTACT 1 cut(s) 926
Bme1390I CCNGG 4 cut(s) 220, 476, 477, 513
Bme18I GGWCC 2 cut(s) 522, 850
BmeT110I CYCGRG 3 cut(s) 475, 622, 758
BmgT120I GGNCC 6 cut(s) 522, 692, 700, 701, 768, 850
BmiI GGNNCC 3 cut(s) 46, 628, 702
BmrFI CCNGG 4 cut(s) 220, 476, 477, 513
BmsI GCATC 1 cut(s) 877
BpiI GAAGAC 2 cut(s) 135, 342
Bpu14I TTCGAA 1 cut(s) 617
BpuMI CCSGG 4 cut(s) 220, 476, 477, 513
BsaHI GRCGYC 2 cut(s) 39, 162
BsaJI CCNNGG 5 cut(s) 22, 210, 219, 475, 511
BsaWI WCCGGW 2 cut(s) 246, 834
Bsc4I CCNNNNNNNGG 6 cut(s) 246, 476, 519, 661, 681, 765
Bse118I RCCGGY 3 cut(s) 83, 747, 765
Bse1I ACTGG 2 cut(s) 524, 694
Bse3DI GCAATG 2 cut(s) 655, 686
BseAI TCCGGA 1 cut(s) 834
BseDI CCNNGG 5 cut(s) 22, 210, 219, 475, 511
BseLI CCNNNNNNNGG 6 cut(s) 246, 476, 519, 661, 681, 765
BseMI GCAATG 2 cut(s) 655, 686
BseMII CTCAG 3 cut(s) 245, 278, 360
BseNI ACTGG 2 cut(s) 524, 694
BseRI GAGGAG 2 cut(s) 101, 524
BseSI GKGCMC 2 cut(s) 704, 759
BseX3I CGGCCG 1 cut(s) 745
BseXI GCAGC 4 cut(s) 92, 154, 188, 493
Bsh1236I CGCG 5 cut(s) 504, 529, 662, 722, 776
Bsh1285I CGRYCG 1 cut(s) 748
BshFI GGCC 5 cut(s) 642, 693, 702, 747, 769
BsiEI CGRYCG 1 cut(s) 748
BsiHKAI GWGCWC 1 cut(s) 834
BsiHKCI CYCGRG 3 cut(s) 475, 622, 758
BslI CCNNNNNNNGG 6 cut(s) 246, 476, 519, 661, 681, 765
BsmAI GTCTC 2 cut(s) 510, 832
BsmI GAATGC 1 cut(s) 802
BsnI GGCC 5 cut(s) 642, 693, 702, 747, 769
BsoBI CYCGRG 3 cut(s) 475, 622, 758
Bsp119I TTCGAA 1 cut(s) 617
Bsp120I GGGCCC 1 cut(s) 700
Bsp1286I GDGCHC 4 cut(s) 704, 759, 782, 834
Bsp13I TCCGGA 1 cut(s) 834
Bsp143I GATC 2 cut(s) 857, 930
BspANI GGCC 5 cut(s) 642, 693, 702, 747, 769
BspCNI CTCAG 3 cut(s) 244, 277, 359
BspEI TCCGGA 1 cut(s) 834
BspFNI CGCG 5 cut(s) 504, 529, 662, 722, 776
BspHI TCATGA 1 cut(s) 916
BspLI GGNNCC 3 cut(s) 46, 628, 702
BspPI GGATC 1 cut(s) 925
BspT104I TTCGAA 1 cut(s) 617
BsrDI GCAATG 2 cut(s) 655, 686
BsrFI RCCGGY 3 cut(s) 83, 747, 765
BsrI ACTGG 2 cut(s) 524, 694
BssAI RCCGGY 3 cut(s) 83, 747, 765
BssECI CCNNGG 5 cut(s) 22, 210, 219, 475, 511
BssMI GATC 2 cut(s) 857, 930
BssNI GRCGYC 2 cut(s) 39, 162
Bst4CI ACNGT 2 cut(s) 100, 911
BstACI GRCGYC 2 cut(s) 39, 162
BstBI TTCGAA 1 cut(s) 617
BstC8I GCNNGC 8 cut(s) 75, 85, 366, 494, 724, 749, 771, 778
BstDEI CTNAG 4 cut(s) 231, 264, 346, 878
BstFNI CGCG 5 cut(s) 504, 529, 662, 722, 776
BstH2I RGCGCY 1 cut(s) 499
BstHHI GCGC 4 cut(s) 498, 506, 531, 662
BstKTI GATC 2 cut(s) 860, 933
BstMAI GTCTC 2 cut(s) 510, 832
BstMBI GATC 2 cut(s) 857, 930
BstMCI CGRYCG 1 cut(s) 748
BstMWI GCNNNNNNNGC 8 cut(s) 140, 188, 282, 316, 648, 657, 699, 732
BstSCI CCNGG 4 cut(s) 218, 474, 475, 511
BstSLI GKGCMC 2 cut(s) 704, 759
BstUI CGCG 5 cut(s) 504, 529, 662, 722, 776
BstV1I GCAGC 4 cut(s) 92, 154, 188, 493
BstV2I GAAGAC 2 cut(s) 135, 342
BstZI CGGCCG 1 cut(s) 745
BsuI GTATCC 1 cut(s) 913
BsuRI GGCC 5 cut(s) 642, 693, 702, 747, 769
Cac8I GCNNGC 8 cut(s) 75, 85, 366, 494, 724, 749, 771, 778
CciI TCATGA 1 cut(s) 916
CfoI GCGC 4 cut(s) 498, 506, 531, 662
Cfr10I RCCGGY 3 cut(s) 83, 747, 765
Cfr13I GGNCC 6 cut(s) 522, 692, 700, 701, 768, 850
Cfr9I CCCGGG 1 cut(s) 475
CseI GACGC 3 cut(s) 47, 140, 170
Csp6I GTAC 2 cut(s) 763, 925
CviAII CATG 2 cut(s) 385, 917
CviQI GTAC 2 cut(s) 763, 925
DdeI CTNAG 4 cut(s) 231, 264, 346, 878
DpnI GATC 2 cut(s) 859, 932
DpnII GATC 2 cut(s) 857, 930
DrdI GACNNNNNNGTC 1 cut(s) 137
DseDI GACNNNNNNGTC 1 cut(s) 137
EaeI YGGCCR 1 cut(s) 745
EagI CGGCCG 1 cut(s) 745
EciI GGCGGA 2 cut(s) 169, 320
Ecl136II GAGCTC 1 cut(s) 832
EclXI CGGCCG 1 cut(s) 745
Eco24I GRGCYC 3 cut(s) 704, 782, 834
Eco47I GGWCC 2 cut(s) 522, 850
Eco47III AGCGCT 1 cut(s) 497
Eco52I CGGCCG 1 cut(s) 745
Eco53kI GAGCTC 1 cut(s) 832
Eco57I CTGAAG 1 cut(s) 621
Eco88I CYCGRG 3 cut(s) 475, 622, 758
EcoICRI GAGCTC 1 cut(s) 832
EcoRI GAATTC 1 cut(s) 14
EcoT38I GRGCYC 3 cut(s) 704, 782, 834
FaeI CATG 2 cut(s) 388, 920
FaiI YATR 6 cut(s) 386, 698, 738, 855, 918, 942
FatI CATG 2 cut(s) 384, 916
FauI CCCGC 3 cut(s) 82, 684, 778
FblI GTMKAC 2 cut(s) 102, 195
Fnu4HI GCNGC 9 cut(s) 28, 78, 81, 165, 168, 202, 507, 663, 774
FriOI GRGCYC 3 cut(s) 704, 782, 834
Fsp4HI GCNGC 9 cut(s) 28, 78, 81, 165, 168, 202, 507, 663, 774
FspBI CTAG 3 cut(s) 137, 311, 798
GlaI GCGC 4 cut(s) 497, 505, 530, 661
GluI GCNGC 9 cut(s) 28, 78, 81, 165, 168, 202, 507, 663, 774
HaeII RGCGCY 1 cut(s) 499
HaeIII GGCC 5 cut(s) 642, 693, 702, 747, 769
HgaI GACGC 3 cut(s) 47, 140, 170
HhaI GCGC 4 cut(s) 498, 506, 531, 662
Hin1I GRCGYC 2 cut(s) 39, 162
Hin1II CATG 2 cut(s) 388, 920
Hin6I GCGC 4 cut(s) 496, 504, 529, 660
HinP1I GCGC 4 cut(s) 496, 504, 529, 660
HincII GTYRAC 2 cut(s) 103, 949
HindII GTYRAC 2 cut(s) 103, 949
HinfI GANTC 4 cut(s) 173, 260, 338, 436
HpaI GTTAAC 1 cut(s) 949
HphI GGTGA 4 cut(s) 88, 178, 269, 929
Hpy166II GTNNAC 4 cut(s) 103, 196, 525, 949
Hpy188I TCNGA 3 cut(s) 52, 430, 631
Hpy188III TCNNGA 2 cut(s) 835, 917
Hpy8I GTNNAC 4 cut(s) 103, 196, 525, 949
Hpy99I CGWCG 5 cut(s) 41, 104, 107, 149, 299
HpyAV CCTTC 3 cut(s) 349, 352, 814
HpyCH4III ACNGT 2 cut(s) 100, 911
HpyCH4IV ACGT 2 cut(s) 416, 584
HpyCH4V TGCA 2 cut(s) 204, 364
HpyF10VI GCNNNNNNNGC 8 cut(s) 140, 188, 282, 316, 648, 657, 699, 732
HpyF3I CTNAG 4 cut(s) 231, 264, 346, 878
HpySE526I ACGT 2 cut(s) 416, 584
Hsp92I GRCGYC 2 cut(s) 39, 162
Hsp92II CATG 2 cut(s) 388, 920
HspAI GCGC 4 cut(s) 496, 504, 529, 660
Kpn2I TCCGGA 1 cut(s) 834
KroI GCCGGC 2 cut(s) 83, 747
KroNI GCCGGC 2 cut(s) 85, 749
KspAI GTTAAC 1 cut(s) 949
Kzo9I GATC 2 cut(s) 857, 930
LmnI GCTCC 4 cut(s) 44, 307, 829, 837
Lsp1109I GCAGC 4 cut(s) 92, 154, 188, 493
LweI GCATC 1 cut(s) 877
MaeI CTAG 3 cut(s) 137, 311, 798
MaeII ACGT 2 cut(s) 416, 584
MaeIII GTNAC 4 cut(s) 257, 544, 716, 935
MalI GATC 2 cut(s) 859, 932
MboI GATC 2 cut(s) 857, 930
MboII GAAGA 4 cut(s) 79, 140, 347, 604
MhlI GDGCHC 4 cut(s) 704, 759, 782, 834
MluCI AATT 6 cut(s) 14, 92, 205, 374, 613, 808
MluI ACGCGT 1 cut(s) 720
MlyI GAGTC 2 cut(s) 254, 332
MmeI TCCRAC 4 cut(s) 75, 147, 654, 930
MroI TCCGGA 1 cut(s) 834
MroNI GCCGGC 2 cut(s) 83, 747
MseI TTAA 1 cut(s) 948
MslI CAYNNNNRTG 1 cut(s) 788
MspA1I CMGCKG 2 cut(s) 167, 201
MspR9I CCNGG 4 cut(s) 220, 476, 477, 513
Mva1269I GAATGC 1 cut(s) 802
MvnI CGCG 5 cut(s) 504, 529, 662, 722, 776
MwoI GCNNNNNNNGC 8 cut(s) 140, 188, 282, 316, 648, 657, 699, 732
NaeI GCCGGC 2 cut(s) 85, 749
NciI CCSGG 4 cut(s) 220, 476, 477, 513
NdeII GATC 2 cut(s) 857, 930
NgoMIV GCCGGC 2 cut(s) 83, 747
NlaIII CATG 2 cut(s) 388, 920
NlaIV GGNNCC 3 cut(s) 46, 628, 702
NmuCI GTSAC 3 cut(s) 257, 544, 935
NspV TTCGAA 1 cut(s) 617
OliI CACNNNNGTG 1 cut(s) 788
PagI TCATGA 1 cut(s) 916
PcsI WCGNNNNNNNCGW 2 cut(s) 111, 168
PctI GAATGC 1 cut(s) 802
PdiI GCCGGC 2 cut(s) 85, 749
PfeI GAWTC 2 cut(s) 173, 436
PkrI GCNGC 9 cut(s) 29, 79, 82, 166, 169, 203, 508, 664, 775
PleI GAGTC 2 cut(s) 254, 332
PpsI GAGTC 2 cut(s) 254, 332
Psp124BI GAGCTC 1 cut(s) 834
PspN4I GGNNCC 3 cut(s) 46, 628, 702
PspOMI GGGCCC 1 cut(s) 700
PspPI GGNCC 6 cut(s) 522, 692, 700, 701, 768, 850
PvuII CAGCTG 1 cut(s) 201
RsaI GTAC 2 cut(s) 764, 926
RsaNI GTAC 2 cut(s) 763, 925
RseI CAYNNNNRTG 1 cut(s) 788
SacI GAGCTC 1 cut(s) 834
SalI GTCGAC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 948
SatI GCNGC 9 cut(s) 28, 78, 81, 165, 168, 202, 507, 663, 774
Sau3AI GATC 2 cut(s) 857, 930
Sau96I GGNCC 6 cut(s) 522, 692, 700, 701, 768, 850
ScaI AGTACT 1 cut(s) 926
SchI GAGTC 2 cut(s) 254, 332
ScrFI CCNGG 4 cut(s) 220, 476, 477, 513
SduI GDGCHC 4 cut(s) 704, 759, 782, 834
SfaNI GCATC 1 cut(s) 877
SfiI GGCCNNNNNGGCC 1 cut(s) 699
SfuI TTCGAA 1 cut(s) 617
SgrDI CGTCGACG 1 cut(s) 101
SinI GGWCC 2 cut(s) 522, 850
SmaI CCCGGG 1 cut(s) 477
SmiMI CAYNNNNRTG 1 cut(s) 788
Sse9I AATT 6 cut(s) 14, 92, 205, 374, 613, 808
SspMI CTAG 3 cut(s) 137, 311, 798
SstI GAGCTC 1 cut(s) 834
StyD4I CCNGG 4 cut(s) 218, 474, 475, 511
TaaI ACNGT 2 cut(s) 100, 911
TaiI ACGT 2 cut(s) 419, 587
TaqI TCGA 5 cut(s) 36, 102, 114, 323, 617
TasI AATT 6 cut(s) 14, 92, 205, 374, 613, 808
TatI WGTACW 1 cut(s) 924
TauI GCSGC 5 cut(s) 30, 80, 167, 665, 776
TfiI GAWTC 2 cut(s) 173, 436
Tru1I TTAA 1 cut(s) 948
Tru9I TTAA 1 cut(s) 948
TseFI GTSAC 3 cut(s) 257, 544, 935
TseI GCWGC 4 cut(s) 80, 167, 201, 506
Tsp45I GTSAC 3 cut(s) 257, 544, 935
TspGWI ACGGA 1 cut(s) 923
TspMI CCCGGG 1 cut(s) 475
VpaK11BI GGWCC 2 cut(s) 522, 850
XapI RAATTY 1 cut(s) 14
XmaI CCCGGG 1 cut(s) 475
XmiI GTMKAC 2 cut(s) 102, 195
XspI CTAG 3 cut(s) 137, 311, 798
ZrmI AGTACT 1 cut(s) 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.