AT4G32930

UPF0587 protein C1orf123 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0005449
Physical Location & Seq
Forward (+)
15898784 .. 15900289
1506 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G32930.2

Sequence Viewer

Length: 504 bp
ATGGTGAACTATGTGCTCAAAATCACCGCTGATCTCGAGAATCTCACTAATCTCCAGCCTTCCGGTGGCTGCGACGATTCCAACTTCCCTTACCTCTTCAAGTTGAAATGTGAAAGATGTGGAGAGGTGACTCCGAAAGAAACATGTGTGACTTTGAATGAGACTTTTACTCCTCCGGGAGGTAGGGGTACTTGTCATCTTGTTCAGAAGTGTAAGTTCTGTGGAAGGGAAGGGAATGTGACTATGATTCCGGGCAAAGGTCGACCTTTAACTCTGGAAGATTCTGAGGCTGGAGAACATGCCCCTCTTATGGTGTTTGACTGTCGTGGCTATGAACCCATTGATTTCGGATTTGGTGGATATTGGAAAGCTCAAGCTGAATCTGGAACCAAATTTGATGAGATTGATTTGTCGAGCGGGGAGGAATTCACAGAGTACGATGAGAAGGGAGAATGCCCAGTAATGATATCGAATTTCCGTGCAAGCTTCAGCGTCACCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF866

Protein Analysis

167

Amino Acids

18.47

Weight (kDa)

4.76

Isoelectric Point (pI)

27.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CXXC_Zn-b_euk PF05907 5 - 171 4e-47 CXXC motif containing zinc binding protein, eukaryotic
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 417
AccI GTMKAC 1 cut(s) 262
AciI CCGC 2 cut(s) 27, 417
AcsI RAATTY 3 cut(s) 392, 425, 472
AcuI CTGAAG 1 cut(s) 472
AdeI CACNNNGTG 1 cut(s) 501
AfaI GTAC 2 cut(s) 190, 437
AfiI CCNNNNNNNGG 4 cut(s) 65, 179, 257, 310
AflIII ACRYGT 1 cut(s) 143
AgsI TTSAA 3 cut(s) 100, 106, 157
AluBI AGCT 3 cut(s) 371, 377, 486
AluI AGCT 3 cut(s) 371, 377, 486
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 1 cut(s) 155
Ama87I CYCGRG 1 cut(s) 35
ApeKI GCWGC 1 cut(s) 69
ApoI RAATTY 3 cut(s) 392, 425, 472
AsuC2I CCSGG 2 cut(s) 177, 252
AsuHPI GGTGA 4 cut(s) 16, 16, 139, 487
AvaI CYCGRG 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 56
BcnI CCSGG 2 cut(s) 177, 252
BcoDI GTCTC 1 cut(s) 155
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
Bme1390I CCNGG 2 cut(s) 177, 252
BmeT110I CYCGRG 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 388
BmrFI CCNGG 2 cut(s) 177, 252
BmrI ACTGGG 1 cut(s) 452
BmuI ACTGGG 1 cut(s) 452
BpmI CTGGAG 2 cut(s) 38, 312
BpuEI CTTGAG 1 cut(s) 357
BpuMI CCSGG 2 cut(s) 177, 252
BsaWI WCCGGW 1 cut(s) 62
BsaXI ACNNNNNCTCC 2 cut(s) 154, 184
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 179, 257, 310
Bse1I ACTGG 1 cut(s) 458
BseLI CCNNNNNNNGG 4 cut(s) 65, 179, 257, 310
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 1 cut(s) 458
BseRI GAGGAG 1 cut(s) 162
BseXI GCAGC 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 18
BsiHKCI CYCGRG 1 cut(s) 35
BsiSI CCGG 3 cut(s) 63, 176, 251
BslI CCNNNNNNNGG 4 cut(s) 65, 179, 257, 310
BsmAI GTCTC 1 cut(s) 155
BsmI GAATGC 1 cut(s) 458
BsoBI CYCGRG 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 18
Bsp143I GATC 1 cut(s) 31
BspACI CCGC 2 cut(s) 27, 417
BspCNI CTCAG 1 cut(s) 277
BspLI GGNNCC 1 cut(s) 388
BsrBI CCGCTC 1 cut(s) 417
BsrI ACTGG 1 cut(s) 458
BssMI GATC 1 cut(s) 31
Bst4CI ACNGT 1 cut(s) 323
Bst6I CTCTTC 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 484
BstDEI CTNAG 1 cut(s) 285
BstENI CCTNNNNNAGG 1 cut(s) 177
BstKTI GATC 1 cut(s) 34
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 1 cut(s) 31
BstNSI RCATGY 2 cut(s) 147, 302
BstSCI CCNGG 2 cut(s) 175, 250
BstV1I GCAGC 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 484
CseI GACGC 1 cut(s) 481
Csp6I GTAC 2 cut(s) 189, 436
CviAII CATG 2 cut(s) 144, 299
CviJI RGCY 7 cut(s) 58, 69, 290, 330, 371, 377, 486
CviKI_1 RGCY 7 cut(s) 58, 69, 290, 330, 371, 377, 486
CviQI GTAC 2 cut(s) 189, 436
DdeI CTNAG 1 cut(s) 285
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
DraIII CACNNNGTG 1 cut(s) 501
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco32I GATATC 1 cut(s) 468
Eco57I CTGAAG 1 cut(s) 472
Eco88I CYCGRG 1 cut(s) 35
EcoNI CCTNNNNNAGG 1 cut(s) 177
EcoRI GAATTC 1 cut(s) 425
EcoRV GATATC 1 cut(s) 468
FaeI CATG 2 cut(s) 147, 302
FaiI YATR 6 cut(s) 12, 145, 245, 300, 311, 333
FatI CATG 2 cut(s) 143, 298
FauI CCCGC 1 cut(s) 410
FblI GTMKAC 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 70
GluI GCNGC 1 cut(s) 70
GsuI CTGGAG 2 cut(s) 38, 312
HapII CCGG 3 cut(s) 63, 176, 251
HgaI GACGC 1 cut(s) 481
Hin1II CATG 2 cut(s) 147, 302
HincII GTYRAC 1 cut(s) 263
HindII GTYRAC 1 cut(s) 263
HindIII AAGCTT 1 cut(s) 484
HinfI GANTC 6 cut(s) 40, 77, 130, 247, 281, 380
HpaII CCGG 3 cut(s) 63, 176, 251
HphI GGTGA 4 cut(s) 16, 16, 139, 487
Hpy166II GTNNAC 2 cut(s) 7, 263
Hpy188I TCNGA 4 cut(s) 135, 207, 286, 350
Hpy188III TCNNGA 4 cut(s) 35, 37, 275, 384
Hpy8I GTNNAC 2 cut(s) 7, 263
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 4 cut(s) 69, 219, 224, 439
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4V TGCA 1 cut(s) 482
HpyF3I CTNAG 1 cut(s) 285
Hsp92II CATG 2 cut(s) 147, 302
Kzo9I GATC 1 cut(s) 31
LpnPI CCDG 8 cut(s) 68, 76, 189, 260, 264, 276, 369, 471
Lsp1109I GCAGC 1 cut(s) 56
MaeIII GTNAC 4 cut(s) 127, 148, 238, 493
MalI GATC 1 cut(s) 33
MbiI CCGCTC 1 cut(s) 417
MboI GATC 1 cut(s) 31
MboII GAAGA 2 cut(s) 88, 290
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 3 cut(s) 392, 425, 472
MlyI GAGTC 1 cut(s) 124
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 7 cut(s) 104, 118, 173, 183, 280, 315, 415
MseI TTAA 1 cut(s) 269
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 3 cut(s) 63, 176, 251
MspR9I CCNGG 2 cut(s) 177, 252
Mva1269I GAATGC 1 cut(s) 458
NciI CCSGG 2 cut(s) 177, 252
NdeII GATC 1 cut(s) 31
NlaIII CATG 2 cut(s) 147, 302
NlaIV GGNNCC 1 cut(s) 388
NmuCI GTSAC 4 cut(s) 127, 148, 238, 493
NspI RCATGY 2 cut(s) 147, 302
PaeR7I CTCGAG 1 cut(s) 35
PciI ACATGT 1 cut(s) 143
PctI GAATGC 1 cut(s) 458
PfeI GAWTC 5 cut(s) 40, 77, 247, 281, 380
PfoI TCCNGGA 1 cut(s) 175
PkrI GCNGC 1 cut(s) 71
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PscI ACATGT 1 cut(s) 143
PspN4I GGNNCC 1 cut(s) 388
RsaI GTAC 2 cut(s) 190, 437
RsaNI GTAC 2 cut(s) 189, 436
SalI GTCGAC 1 cut(s) 261
SaqAI TTAA 1 cut(s) 269
SatI GCNGC 1 cut(s) 70
Sau3AI GATC 1 cut(s) 31
SchI GAGTC 1 cut(s) 124
ScrFI CCNGG 2 cut(s) 177, 252
SduI GDGCHC 1 cut(s) 18
SetI ASST 8 cut(s) 96, 129, 184, 262, 268, 373, 379, 488
Sfr274I CTCGAG 1 cut(s) 35
SlaI CTCGAG 1 cut(s) 35
SmlI CTYRAG 2 cut(s) 35, 372
SmoI CTYRAG 2 cut(s) 35, 372
Sse9I AATT 3 cut(s) 392, 425, 472
SsiI CCGC 2 cut(s) 27, 417
StyD4I CCNGG 2 cut(s) 175, 250
TaaI ACNGT 1 cut(s) 323
TaqI TCGA 4 cut(s) 36, 262, 413, 470
TasI AATT 3 cut(s) 392, 425, 472
TfiI GAWTC 5 cut(s) 40, 77, 247, 281, 380
Tru1I TTAA 1 cut(s) 269
Tru9I TTAA 1 cut(s) 269
TseFI GTSAC 4 cut(s) 127, 148, 238, 493
TseI GCWGC 1 cut(s) 69
Tsp45I GTSAC 4 cut(s) 127, 148, 238, 493
TspDTI ATGAA 1 cut(s) 348
TspGWI ACGGA 1 cut(s) 467
XagI CCTNNNNNAGG 1 cut(s) 177
XapI RAATTY 3 cut(s) 392, 425, 472
XceI RCATGY 2 cut(s) 147, 302
XcmI CCANNNNNNNNNTGG 1 cut(s) 62
XhoI CTCGAG 1 cut(s) 35
XmiI GTMKAC 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.