Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005449

Physical Location & Seq

Genomic Coordinates Reverse (-)

1936890 .. 1938358

Gene Structure 1469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00158530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGTGCGCTTCTTGCTTCAGATCAGGGCCAAACTCCAGAGCCTCACTAACCTTCAGCCCCAAGGAGGCTGCAAGGACCCCGACTTTACCTACCTCTTCAAGCTGAAATGTGAGGGCTGCGGAGAGCTAAGCGAGAAAGAAGCTGGTGTGAGATTGAACCTGGGCAAACGCAAGGGTGACCCTGATCTTGTTCGGAAGGTGGCAGGGACAACTTTTGACAATGTTGACTTGTCGAAAGGGAAGTTTGCTGAGTACGATGAGAGGGGAGAGCGTTCAGTTAAGATTTCCAATCTCCATGCTACTTTTACTGTTATTAGGCCTGGATATACATGTAGGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF866

Protein Analysis

113

Amino Acids

12.77

Weight (kDa)

9.3

Isoelectric Point (pI)

30.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CXXC_Zn-b_euk	PF05907	6 - 51	2.9e-08	CXXC motif containing zinc binding protein, eukaryotic
CXXC_Zn-b_euk	PF05907	64 - 102	2.8e-07	CXXC motif containing zinc binding protein, eukaryotic

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32930 AT4G32930
fragaria_vesca	FvH4_2g32260 FvH4_2g32280
malus_domestica	MD08G1073900.v1.1
prunus_persica	Prupe.1G415500_v2.0.a1
pyrus_communis	pycom15g05830
rosa_chinensis	RchiOBHm_Chr6g0310421 RchiOBHm_Chr6g0310431
rosa_laevigata	RLG00000010483
rosa_multiflora	Rmu_sc0000439.1_g000001 Rmu_sc0009072.1_g000007 Rmu_sc0009072.1_g000008 Rmu_sc0020729.1_g000016 Rmu_sc0020729.1_g000017
rosa_roxburghii	Rroxscaffold_7G00158530
rosa_rugosa	Rorug06G0380100 Rorug06G0380200 Rorug06G0380300
rosa_samantha	Rh6AG494100 Rh6AG494200 Rh6BG503800 Rh6BG504000 Rh6CG509000 Rh6CG509200 Rh6DG495000 Rh6DG495200
rosa_wichuraiana	Rw6G042990 Rw6G043000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	120
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	329
AgsI	TTSAA	2 cut(s)	100, 157
AjnI	CCWGG	2 cut(s)	159, 319
AluBI	AGCT	3 cut(s)	103, 127, 143
AluI	AGCT	3 cut(s)	103, 127, 143
AoxI	GGCC	2 cut(s)	27, 317
ApeKI	GCWGC	2 cut(s)	69, 117
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	27, 76
AsuHPI	GGTGA	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	76
BbvI	GCAGC	2 cut(s)	56, 104
BciT130I	CCWGG	2 cut(s)	161, 321
BisI	GCNGC	2 cut(s)	70, 118
BlpI	GCTNAGC	1 cut(s)	128
BlsI	GCNGC	2 cut(s)	71, 119
Bme1390I	CCNGG	2 cut(s)	161, 321
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	27, 76
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	2 cut(s)	161, 321
BpmI	CTGGAG	1 cut(s)	20
Bpu1102I	GCTNAGC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	61, 160
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
BseBI	CCWGG	2 cut(s)	161, 321
BseDI	CCNNGG	2 cut(s)	61, 160
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMII	CTCAG	1 cut(s)	240
BseXI	GCAGC	2 cut(s)	56, 104
BshFI	GGCC	2 cut(s)	29, 319
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmFI	GGGAC	1 cut(s)	220
BsnI	GGCC	2 cut(s)	29, 319
Bsp143I	GATC	2 cut(s)	21, 184
Bsp1720I	GCTNAGC	1 cut(s)	128
BspACI	CCGC	1 cut(s)	120
BspANI	GGCC	2 cut(s)	29, 319
BspCNI	CTCAG	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	78
BssECI	CCNNGG	2 cut(s)	61, 160
BssMI	GATC	2 cut(s)	21, 184
BssT1I	CCWWGG	1 cut(s)	61
Bst2UI	CCWGG	2 cut(s)	161, 321
Bst4CI	ACNGT	1 cut(s)	310
Bst6I	CTCTTC	1 cut(s)	101
BstDEI	CTNAG	2 cut(s)	128, 249
BstEII	GGTNACC	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	2 cut(s)	24, 187
BstMBI	GATC	2 cut(s)	21, 184
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstNI	CCWGG	2 cut(s)	161, 321
BstNSI	RCATGY	1 cut(s)	333
BstPI	GGTNACC	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	159, 319
BstV1I	GCAGC	2 cut(s)	56, 104
BsuRI	GGCC	2 cut(s)	29, 319
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	2 cut(s)	27, 76
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	2 cut(s)	296, 330
CviJI	RGCY	9 cut(s)	29, 42, 58, 69, 103, 117, 127, 143, 319
CviKI_1	RGCY	9 cut(s)	29, 42, 58, 69, 103, 117, 127, 143, 319
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	2 cut(s)	128, 249
DpnI	GATC	2 cut(s)	23, 186
DpnII	GATC	2 cut(s)	21, 184
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	61
Eco147I	AGGCCT	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	38
Eco91I	GGTNACC	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	76
EcoO65I	GGTNACC	1 cut(s)	176
EcoRII	CCWGG	2 cut(s)	159, 319
EcoT14I	CCWWGG	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	2 cut(s)	299, 333
FaiI	YATR	3 cut(s)	297, 327, 331
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	2 cut(s)	295, 329
Fnu4HI	GCNGC	2 cut(s)	70, 118
Fsp4HI	GCNGC	2 cut(s)	70, 118
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	2 cut(s)	70, 118
GsuI	CTGGAG	1 cut(s)	20
HaeIII	GGCC	2 cut(s)	29, 319
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	2 cut(s)	299, 333
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	21, 195
Hpy188III	TCNNGA	1 cut(s)	37
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	2 cut(s)	62, 190
HpyCH4III	ACNGT	1 cut(s)	310
HpyCH4V	TGCA	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
HpyF3I	CTNAG	2 cut(s)	128, 249
Hsp92II	CATG	2 cut(s)	299, 333
HspAI	GCGC	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	21, 184
LpnPI	CCDG	9 cut(s)	10, 50, 129, 146, 173, 189, 195, 306, 333
Lsp1109I	GCAGC	2 cut(s)	56, 104
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	2 cut(s)	23, 186
MboI	GATC	2 cut(s)	21, 184
MboII	GAAGA	1 cut(s)	88
MnlI	CCTC	5 cut(s)	53, 59, 104, 106, 255
MseI	TTAA	1 cut(s)	279
MslI	CAYNNNNRTG	1 cut(s)	334
MspR9I	CCNGG	2 cut(s)	161, 321
MvaI	CCWGG	2 cut(s)	161, 321
MwoI	GCNNNNNNNGC	1 cut(s)	13
NdeII	GATC	2 cut(s)	21, 184
NlaIII	CATG	2 cut(s)	299, 333
NlaIV	GGNNCC	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	176
NspI	RCATGY	1 cut(s)	333
PceI	AGGCCT	1 cut(s)	319
PciI	ACATGT	1 cut(s)	329
PkrI	GCNGC	2 cut(s)	71, 119
PpuMI	RGGWCCY	1 cut(s)	76
PscI	ACATGT	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	76
Psp6I	CCWGG	2 cut(s)	159, 319
PspEI	GGTNACC	1 cut(s)	176
PspGI	CCWGG	2 cut(s)	159, 319
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	2 cut(s)	27, 76
PspPPI	RGGWCCY	1 cut(s)	76
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
RseI	CAYNNNNRTG	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	2 cut(s)	70, 118
Sau3AI	GATC	2 cut(s)	21, 184
Sau96I	GGNCC	2 cut(s)	27, 76
ScrFI	CCNGG	2 cut(s)	161, 321
SetI	ASST	9 cut(s)	54, 92, 96, 105, 129, 145, 162, 201, 338
SinI	GGWCC	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	334
SseBI	AGGCCT	1 cut(s)	319
SsiI	CCGC	1 cut(s)	120
StuI	AGGCCT	1 cut(s)	319
StyD4I	CCNGG	2 cut(s)	159, 319
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	1 cut(s)	310
TaqI	TCGA	1 cut(s)	233
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	176
TseI	GCWGC	2 cut(s)	69, 117
Tsp45I	GTSAC	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	76
XceI	RCATGY	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.