Rh6CG509000

UPF0587 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0005449
Physical Location & Seq
Reverse (-)
66952211 .. 66954864
2654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG509000.1

Sequence Viewer

Length: 474 bp
ATGGTGCTCTTCGCGCTACAGATAACGGCCGAGCTCGAAAACCTCACTAATCTTCAGCCCGGGGGAGGCTGCGATGATCCAGAATTTACCTATCTCTTCAAGTTGAAATGTCAGAGCTGTGGTGAGCCGACTCAGAAGGAAACTGCTTTGAGCTTGAGCGAGTCTGTTCCTCTTCCGGTGGGCAAGGGAACCACTAATCTCATTCAGAAGTGCAAGTTTTGTGGCAGGGAAGGAACCGTAACAATGATGCCTGGTCGTGGTCGACCATTGACTGAGGAGTTAAGTGAAGCAGGGAAGTTTGCCCCCTTGATGGTGTTCGAATGCAGGGGTTATGAGCCTGTGGATTATGTCTTTGGTGGCGGGTGGAAAGTTCAATCTGTAAGTTTCTCCCTCTTAACAAGGCACTTTCTATTATGCTGGAGTGTTGCTCGTGGAATGTTTGAACAGTTCATCTTACTTATGGCTGGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF866

Protein Analysis

157

Amino Acids

17.33

Weight (kDa)

5.28

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CXXC_Zn-b_euk PF05907 5 - 128 3.8e-36 CXXC motif containing zinc binding protein, eukaryotic
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 262
AccII CGCG 1 cut(s) 14
AciI CCGC 1 cut(s) 360
AclWI GGATC 1 cut(s) 71
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 1 cut(s) 83
AcuI CTGAAG 1 cut(s) 38
AfiI CCNNNNNNNGG 3 cut(s) 65, 257, 310
AgsI TTSAA 4 cut(s) 100, 106, 374, 443
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 3 cut(s) 34, 117, 153
AluI AGCT 3 cut(s) 34, 117, 153
Alw21I GWGCWC 2 cut(s) 9, 36
AlwI GGATC 1 cut(s) 71
Ama87I CYCGRG 1 cut(s) 59
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 69
ApoI RAATTY 1 cut(s) 83
AspLEI GCGC 1 cut(s) 16
AsuC2I CCSGG 2 cut(s) 60, 61
AsuHPI GGTGA 1 cut(s) 134
AsuII TTCGAA 1 cut(s) 318
AvaI CYCGRG 1 cut(s) 59
BanII GRGCYC 1 cut(s) 36
BauI CACGAG 1 cut(s) 429
Bbv12I GWGCWC 2 cut(s) 9, 36
BbvI GCAGC 1 cut(s) 56
BccI CCATC 1 cut(s) 304
BceAI ACGGC 1 cut(s) 42
BciT130I CCWGG 1 cut(s) 252
BcnI CCSGG 2 cut(s) 60, 61
BfmI CTRYAG 1 cut(s) 17
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
Bme1390I CCNGG 3 cut(s) 60, 61, 252
BmeT110I CYCGRG 1 cut(s) 59
BmiI GGNNCC 2 cut(s) 190, 235
BmrFI CCNGG 3 cut(s) 60, 61, 252
BmsI GCATC 1 cut(s) 237
BplI GAGNNNNNCTC 2 cut(s) 412, 444
BpmI CTGGAG 1 cut(s) 439
Bpu14I TTCGAA 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 175
BpuMI CCSGG 2 cut(s) 60, 61
BsaJI CCNNGG 2 cut(s) 59, 60
BsaWI WCCGGW 1 cut(s) 175
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 257, 310
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 2 cut(s) 59, 60
BseLI CCNNNNNNNGG 3 cut(s) 65, 257, 310
BseMII CTCAG 2 cut(s) 146, 264
BseRI GAGGAG 1 cut(s) 290
BseX3I CGGCCG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 56
Bsh1236I CGCG 1 cut(s) 14
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 1 cut(s) 29
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 2 cut(s) 9, 36
BsiHKCI CYCGRG 1 cut(s) 59
BsiSI CCGG 2 cut(s) 60, 176
BslI CCNNNNNNNGG 3 cut(s) 65, 257, 310
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 1 cut(s) 29
BsoBI CYCGRG 1 cut(s) 59
Bsp119I TTCGAA 1 cut(s) 318
Bsp1286I GDGCHC 2 cut(s) 9, 36
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 1 cut(s) 360
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 2 cut(s) 145, 265
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 2 cut(s) 190, 235
BspPI GGATC 1 cut(s) 71
BspQI GCTCTTC 1 cut(s) 14
BspT104I TTCGAA 1 cut(s) 318
BssECI CCNNGG 2 cut(s) 59, 60
BssMI GATC 1 cut(s) 76
BssSI CACGAG 1 cut(s) 429
Bst2BI CACGAG 1 cut(s) 429
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 2 cut(s) 238, 447
Bst6I CTCTTC 3 cut(s) 14, 101, 177
BstBI TTCGAA 1 cut(s) 318
BstDEI CTNAG 2 cut(s) 132, 273
BstFNI CGCG 1 cut(s) 14
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 3 cut(s) 58, 59, 250
BstSFI CTRYAG 1 cut(s) 17
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 56
BstZI CGGCCG 1 cut(s) 27
BsuRI GGCC 1 cut(s) 29
BtgZI GCGATG 1 cut(s) 87
CfoI GCGC 1 cut(s) 16
Cfr9I CCCGGG 1 cut(s) 59
CspCI CAANNNNNGTGG 2 cut(s) 202, 237
CviJI RGCY 9 cut(s) 29, 34, 58, 69, 117, 127, 153, 337, 464
CviKI_1 RGCY 9 cut(s) 29, 34, 58, 69, 117, 127, 153, 337, 464
DdeI CTNAG 2 cut(s) 132, 273
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
EaeI YGGCCR 1 cut(s) 27
EagI CGGCCG 1 cut(s) 27
Eam1104I CTCTTC 3 cut(s) 14, 101, 177
EarI CTCTTC 3 cut(s) 14, 101, 177
Ecl136II GAGCTC 1 cut(s) 34
EclXI CGGCCG 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 36
Eco52I CGGCCG 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 38
Eco88I CYCGRG 1 cut(s) 59
EcoICRI GAGCTC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 36
FaiI YATR 4 cut(s) 333, 348, 415, 461
FauI CCCGC 1 cut(s) 353
FblI GTMKAC 1 cut(s) 262
Fnu4HI GCNGC 1 cut(s) 70
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 70
GlaI GCGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 70
GsuI CTGGAG 1 cut(s) 439
HaeIII GGCC 1 cut(s) 29
HapII CCGG 2 cut(s) 60, 176
HhaI GCGC 1 cut(s) 16
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HincII GTYRAC 1 cut(s) 263
HindII GTYRAC 1 cut(s) 263
HinfI GANTC 2 cut(s) 130, 161
HpaII CCGG 2 cut(s) 60, 176
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 3 cut(s) 114, 135, 207
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 1 cut(s) 263
HpyAV CCTTC 2 cut(s) 130, 224
HpyCH4III ACNGT 2 cut(s) 238, 447
HpyCH4V TGCA 2 cut(s) 213, 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 2 cut(s) 132, 273
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 1 cut(s) 76
LguI GCTCTTC 1 cut(s) 14
Lsp1109I GCAGC 1 cut(s) 56
LweI GCATC 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 238
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 3 cut(s) 44, 88, 164
MhlI GDGCHC 2 cut(s) 9, 36
MluCI AATT 1 cut(s) 83
MlyI GAGTC 2 cut(s) 124, 170
MnlI CCTC 5 cut(s) 53, 59, 180, 268, 401
MseI TTAA 2 cut(s) 281, 395
MspI CCGG 2 cut(s) 60, 176
MspR9I CCNGG 3 cut(s) 60, 61, 252
Mva1269I GAATGC 1 cut(s) 326
MvaI CCWGG 1 cut(s) 252
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 13
NciI CCSGG 2 cut(s) 60, 61
NdeII GATC 1 cut(s) 76
NlaIV GGNNCC 2 cut(s) 190, 235
NmeAIII GCCGAG 1 cut(s) 55
NspV TTCGAA 1 cut(s) 318
PciSI GCTCTTC 1 cut(s) 14
PctI GAATGC 1 cut(s) 326
PkrI GCNGC 1 cut(s) 71
PleI GAGTC 2 cut(s) 124, 169
PpsI GAGTC 2 cut(s) 124, 169
Psp124BI GAGCTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 2 cut(s) 190, 235
SacI GAGCTC 1 cut(s) 36
SalI GTCGAC 1 cut(s) 261
SapI GCTCTTC 1 cut(s) 14
SaqAI TTAA 2 cut(s) 281, 395
SatI GCNGC 1 cut(s) 70
Sau3AI GATC 1 cut(s) 76
SchI GAGTC 2 cut(s) 124, 170
ScrFI CCNGG 3 cut(s) 60, 61, 252
SduI GDGCHC 2 cut(s) 9, 36
SetI ASST 5 cut(s) 36, 45, 92, 119, 155
SfaNI GCATC 1 cut(s) 237
SfcI CTRYAG 1 cut(s) 17
SfuI TTCGAA 1 cut(s) 318
SmaI CCCGGG 1 cut(s) 61
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
Sse9I AATT 1 cut(s) 83
SsiI CCGC 1 cut(s) 360
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 3 cut(s) 58, 59, 250
TaaI ACNGT 2 cut(s) 238, 447
TaqI TCGA 3 cut(s) 36, 262, 318
TasI AATT 1 cut(s) 83
Tru1I TTAA 2 cut(s) 281, 395
Tru9I TTAA 2 cut(s) 281, 395
TseI GCWGC 1 cut(s) 69
TspDTI ATGAA 1 cut(s) 439
TspMI CCCGGG 1 cut(s) 59
XapI RAATTY 1 cut(s) 83
XmaI CCCGGG 1 cut(s) 59
XmiI GTMKAC 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.