Rmu_sc0009072.1_g000008

UPF0587 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009072.1
OG0005449
Physical Location & Seq
Forward (+)
29612 .. 31701
2090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009072.1_g000008.1.cds

Sequence Viewer

Length: 504 bp
atggtgctcttcgcgctacagataacggccgagctcgaaaacctcactaatcttcagtcccggggaggctgcgatgatccagaatttacctatcccttcaagttgaaatgtcagagctgtggtgagccgactcagaaggaaactgctttgagcttgagcgagtctgttcctcttccggtgggcaagggaaccactaatctcattcagaagtgcaagttttgtggcagggaaggaaccgtaacaatgatgcctggtcgtggtcaaccattgaccgaggagttaagtgaagcggggaagtttgcccccttgatggtgttcgaatgcaggggttatgagcctgcggattatgtctttggtggcgggtggaaagttcaatctttggctgggacaacatttgacgatgttgacttgtcagaggaggagtttgctgaatatgacgagaagggagagtgcccagttatgatctccaagccctcttctacttttgttgtgctgaagcactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF866

Protein Analysis

167

Amino Acids

18.31

Weight (kDa)

4.6

Isoelectric Point (pI)

53.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 14
AciI CCGC 3 cut(s) 290, 341, 360
AclWI GGATC 1 cut(s) 71
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 1 cut(s) 83
AcuI CTGAAG 1 cut(s) 38
AfiI CCNNNNNNNGG 2 cut(s) 257, 310
AgsI TTSAA 3 cut(s) 100, 106, 374
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 3 cut(s) 34, 117, 153
AluI AGCT 3 cut(s) 34, 117, 153
Alw21I GWGCWC 2 cut(s) 9, 36
AlwI GGATC 1 cut(s) 71
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 69
ApoI RAATTY 1 cut(s) 83
AspLEI GCGC 1 cut(s) 16
AsuC2I CCSGG 2 cut(s) 61, 62
AsuHPI GGTGA 1 cut(s) 134
AsuII TTCGAA 1 cut(s) 318
AvaI CYCGRG 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 455
BanII GRGCYC 1 cut(s) 36
Bbv12I GWGCWC 2 cut(s) 9, 36
BbvI GCAGC 1 cut(s) 56
BccI CCATC 1 cut(s) 304
BceAI ACGGC 1 cut(s) 42
BciT130I CCWGG 1 cut(s) 252
BcnI CCSGG 2 cut(s) 61, 62
BfaI CTAG 1 cut(s) 502
BfmI CTRYAG 1 cut(s) 17
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
Bme1390I CCNGG 3 cut(s) 61, 62, 252
BmeT110I CYCGRG 1 cut(s) 60
BmiI GGNNCC 2 cut(s) 190, 235
BmrFI CCNGG 3 cut(s) 61, 62, 252
BmrI ACTGGG 1 cut(s) 449
BmsI GCATC 1 cut(s) 237
BmuI ACTGGG 1 cut(s) 449
Bpu14I TTCGAA 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 175
BpuMI CCSGG 2 cut(s) 61, 62
BsaJI CCNNGG 3 cut(s) 60, 61, 273
BsaWI WCCGGW 1 cut(s) 175
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 310
Bse1I ACTGG 1 cut(s) 455
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 3 cut(s) 60, 61, 273
BseLI CCNNNNNNNGG 2 cut(s) 257, 310
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 1 cut(s) 455
BseRI GAGGAG 3 cut(s) 290, 431, 434
BseSI GKGCMC 1 cut(s) 455
BseX3I CGGCCG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 56
BseYI CCCAGC 1 cut(s) 383
Bsh1236I CGCG 1 cut(s) 14
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 1 cut(s) 29
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 2 cut(s) 9, 36
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 2 cut(s) 61, 176
BslFI GGGAC 2 cut(s) 43, 400
BslI CCNNNNNNNGG 2 cut(s) 257, 310
BsmFI GGGAC 2 cut(s) 43, 400
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 1 cut(s) 29
BsoBI CYCGRG 1 cut(s) 60
Bsp119I TTCGAA 1 cut(s) 318
Bsp1286I GDGCHC 3 cut(s) 9, 36, 455
Bsp143I GATC 2 cut(s) 76, 462
BspACI CCGC 3 cut(s) 290, 341, 360
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 1 cut(s) 145
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 2 cut(s) 190, 235
BspPI GGATC 1 cut(s) 71
BspQI GCTCTTC 1 cut(s) 14
BspT104I TTCGAA 1 cut(s) 318
BsrI ACTGG 1 cut(s) 455
BssECI CCNNGG 3 cut(s) 60, 61, 273
BssMI GATC 2 cut(s) 76, 462
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 238
Bst6I CTCTTC 3 cut(s) 14, 177, 481
BstBI TTCGAA 1 cut(s) 318
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 1 cut(s) 132
BstFNI CGCG 1 cut(s) 14
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 2 cut(s) 79, 465
BstMBI GATC 2 cut(s) 76, 462
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 3 cut(s) 59, 60, 250
BstSFI CTRYAG 1 cut(s) 17
BstSLI GKGCMC 1 cut(s) 455
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 56
BstZI CGGCCG 1 cut(s) 27
BsuRI GGCC 1 cut(s) 29
BtgZI GCGATG 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 339
CfoI GCGC 1 cut(s) 16
Cfr9I CCCGGG 1 cut(s) 60
CspCI CAANNNNNGTGG 2 cut(s) 202, 237
CviJI RGCY 9 cut(s) 29, 34, 69, 117, 127, 153, 337, 383, 472
CviKI_1 RGCY 9 cut(s) 29, 34, 69, 117, 127, 153, 337, 383, 472
DdeI CTNAG 1 cut(s) 132
DpnI GATC 2 cut(s) 78, 464
DpnII GATC 2 cut(s) 76, 462
EaeI YGGCCR 1 cut(s) 27
EagI CGGCCG 1 cut(s) 27
Eam1104I CTCTTC 3 cut(s) 14, 177, 481
EarI CTCTTC 3 cut(s) 14, 177, 481
Ecl136II GAGCTC 1 cut(s) 34
EclXI CGGCCG 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 36
Eco52I CGGCCG 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 38
Eco88I CYCGRG 1 cut(s) 60
EcoICRI GAGCTC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 36
FaiI YATR 4 cut(s) 333, 348, 435, 461
FaqI GGGAC 2 cut(s) 43, 400
FauI CCCGC 2 cut(s) 283, 353
Fnu4HI GCNGC 1 cut(s) 70
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 70
FspBI CTAG 1 cut(s) 502
GlaI GCGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 70
GsaI CCCAGC 1 cut(s) 387
HaeIII GGCC 1 cut(s) 29
HapII CCGG 2 cut(s) 61, 176
HhaI GCGC 1 cut(s) 16
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HincII GTYRAC 2 cut(s) 263, 406
HindII GTYRAC 2 cut(s) 263, 406
HinfI GANTC 2 cut(s) 130, 161
HpaII CCGG 2 cut(s) 61, 176
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 2 cut(s) 263, 406
Hpy188I TCNGA 4 cut(s) 114, 135, 207, 415
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 2 cut(s) 263, 406
HpyAV CCTTC 4 cut(s) 106, 130, 224, 436
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4V TGCA 2 cut(s) 213, 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 1 cut(s) 132
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 2 cut(s) 76, 462
LguI GCTCTTC 1 cut(s) 14
Lsp1109I GCAGC 1 cut(s) 56
LweI GCATC 1 cut(s) 237
MaeI CTAG 1 cut(s) 502
MaeIII GTNAC 1 cut(s) 238
MalI GATC 2 cut(s) 78, 464
MboI GATC 2 cut(s) 76, 462
MboII GAAGA 3 cut(s) 44, 164, 468
MhlI GDGCHC 3 cut(s) 9, 36, 455
MluCI AATT 1 cut(s) 83
MlyI GAGTC 2 cut(s) 124, 170
MnlI CCTC 7 cut(s) 53, 59, 180, 268, 409, 412, 484
MseI TTAA 1 cut(s) 281
MspI CCGG 2 cut(s) 61, 176
MspR9I CCNGG 3 cut(s) 61, 62, 252
Mva1269I GAATGC 1 cut(s) 326
MvaI CCWGG 1 cut(s) 252
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 13
NciI CCSGG 2 cut(s) 61, 62
NdeII GATC 2 cut(s) 76, 462
NlaIV GGNNCC 2 cut(s) 190, 235
NmeAIII GCCGAG 1 cut(s) 55
NspV TTCGAA 1 cut(s) 318
PciSI GCTCTTC 1 cut(s) 14
PctI GAATGC 1 cut(s) 326
PkrI GCNGC 1 cut(s) 71
PleI GAGTC 2 cut(s) 124, 169
PpsI GAGTC 2 cut(s) 124, 169
Psp124BI GAGCTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 250
PspFI CCCAGC 1 cut(s) 383
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 2 cut(s) 190, 235
SacI GAGCTC 1 cut(s) 36
SapI GCTCTTC 1 cut(s) 14
SaqAI TTAA 1 cut(s) 281
SatI GCNGC 1 cut(s) 70
Sau3AI GATC 2 cut(s) 76, 462
SchI GAGTC 2 cut(s) 124, 170
ScrFI CCNGG 3 cut(s) 61, 62, 252
SduI GDGCHC 3 cut(s) 9, 36, 455
SetI ASST 5 cut(s) 36, 45, 92, 119, 155
SfaNI GCATC 1 cut(s) 237
SfcI CTRYAG 1 cut(s) 17
SfuI TTCGAA 1 cut(s) 318
SmaI CCCGGG 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
Sse9I AATT 1 cut(s) 83
SsiI CCGC 3 cut(s) 290, 341, 360
SspMI CTAG 1 cut(s) 502
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 3 cut(s) 59, 60, 250
TaaI ACNGT 1 cut(s) 238
TaqI TCGA 2 cut(s) 36, 318
TaqII GACCGA 1 cut(s) 287
TasI AATT 1 cut(s) 83
Tru1I TTAA 1 cut(s) 281
Tru9I TTAA 1 cut(s) 281
TseI GCWGC 1 cut(s) 69
TspMI CCCGGG 1 cut(s) 60
XapI RAATTY 1 cut(s) 83
XmaI CCCGGG 1 cut(s) 60
XspI CTAG 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.