Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005449

Physical Location & Seq

Genomic Coordinates Forward (+)

52610332 .. 52611684

Gene Structure 1353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0380200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAAACCAGAAAAGAAAGAAGCAAGCAGAGTGACTCTATCCAGTTCAGGCTCTTCTTAAATGGTTTGCTCGGTCAGTCAATGCCATCTAACTTGGAGCTTGCTGGATCAGTCAATGCCAAAGTCAATGGAATCACAGTTGGGAATACGAAGCTTCACATTGAACAAGAATATGTTCTCCTTTATCTTCACCAAGCTTTTAATATATTGTTTTGTGATTTGGCGATATCCAAAGAAGCTGTGGGAGGGGAGGGGCTTGCTTTATTATATAGTCTGATCACTAATACAAAGACAATTGTCACGGGAGCAGGAGATGAAACACCTAGGTTTTGGAATGTGTTTCCTTCCCTTAAATCTCAGTTAGCCTTGGACAACTGGAATTGGTTACTGCCTAGAGGATGGCATGCGGCTTCTGGTGCACGAATTTATCCCTCAAGGCAACTTGAACATGCATCTACATATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF866

Protein Analysis

155

Amino Acids

17.31

Weight (kDa)

8.73

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32930 AT4G32930
fragaria_vesca	FvH4_2g32260 FvH4_2g32280
malus_domestica	MD08G1073900.v1.1
prunus_persica	Prupe.1G415500_v2.0.a1
pyrus_communis	pycom15g05830
rosa_chinensis	RchiOBHm_Chr6g0310421 RchiOBHm_Chr6g0310431
rosa_laevigata	RLG00000010483
rosa_multiflora	Rmu_sc0000439.1_g000001 Rmu_sc0009072.1_g000007 Rmu_sc0009072.1_g000008 Rmu_sc0020729.1_g000016 Rmu_sc0020729.1_g000017
rosa_roxburghii	Rroxscaffold_7G00158530
rosa_rugosa	Rorug06G0380100 Rorug06G0380200 Rorug06G0380300
rosa_samantha	Rh6AG494100 Rh6AG494200 Rh6BG503800 Rh6BG504000 Rh6CG509000 Rh6CG509200 Rh6DG495000 Rh6DG495200
rosa_wichuraiana	Rw6G042990 Rw6G043000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	407
AclWI	GGATC	1 cut(s)	115
AcsI	RAATTY	1 cut(s)	423
AgsI	TTSAA	2 cut(s)	164, 446
AluBI	AGCT	4 cut(s)	100, 154, 197, 239
AluI	AGCT	4 cut(s)	100, 154, 197, 239
Alw21I	GWGCWC	1 cut(s)	421
Alw44I	GTGCAC	1 cut(s)	417
AlwI	GGATC	1 cut(s)	115
ApaLI	GTGCAC	1 cut(s)	417
ApoI	RAATTY	1 cut(s)	423
Asp700I	GAANNNNTTC	1 cut(s)	174
AspA2I	CCTAGG	1 cut(s)	323
AsuHPI	GGTGA	1 cut(s)	182
AvrII	CCTAGG	1 cut(s)	323
BaeGI	GKGCMC	1 cut(s)	421
Bbv12I	GWGCWC	1 cut(s)	421
BccI	CCATC	2 cut(s)	94, 393
BclI	TGATCA	1 cut(s)	276
BfaI	CTAG	2 cut(s)	324, 393
BisI	GCNGC	1 cut(s)	408
BlnI	CCTAGG	1 cut(s)	323
BlsI	GCNGC	1 cut(s)	409
BmsI	GCATC	1 cut(s)	461
BoxI	GACNNNNGTC	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	418
BsaJI	CCNNGG	2 cut(s)	323, 366
Bse1I	ACTGG	2 cut(s)	43, 380
BseDI	CCNNGG	2 cut(s)	323, 366
BseGI	GGATG	1 cut(s)	404
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	2 cut(s)	43, 380
BseSI	GKGCMC	1 cut(s)	421
BsiHKAI	GWGCWC	1 cut(s)	421
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	2 cut(s)	107, 276
BspACI	CCGC	1 cut(s)	407
BspCNI	CTCAG	1 cut(s)	370
BspPI	GGATC	1 cut(s)	115
BspQI	GCTCTTC	1 cut(s)	59
BsrI	ACTGG	2 cut(s)	43, 380
BssECI	CCNNGG	2 cut(s)	323, 366
BssMI	GATC	2 cut(s)	107, 276
BssT1I	CCWWGG	2 cut(s)	323, 366
Bst4CI	ACNGT	1 cut(s)	139
Bst6I	CTCTTC	1 cut(s)	59
BstC8I	GCNNGC	4 cut(s)	26, 102, 258, 405
BstDEI	CTNAG	1 cut(s)	357
BstF5I	GGATG	1 cut(s)	404
BstKTI	GATC	2 cut(s)	110, 279
BstMBI	GATC	2 cut(s)	107, 276
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstNSI	RCATGY	2 cut(s)	407, 452
BstPAI	GACNNNNGTC	1 cut(s)	296
BstSLI	GKGCMC	1 cut(s)	421
BtsCI	GGATG	1 cut(s)	404
Cac8I	GCNNGC	4 cut(s)	26, 102, 258, 405
CviAII	CATG	2 cut(s)	404, 449
CviJI	RGCY	8 cut(s)	52, 100, 154, 197, 239, 256, 365, 410
CviKI_1	RGCY	8 cut(s)	52, 100, 154, 197, 239, 256, 365, 410
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	2 cut(s)	109, 278
DpnII	GATC	2 cut(s)	107, 276
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco130I	CCWWGG	2 cut(s)	323, 366
Eco32I	GATATC	1 cut(s)	228
EcoRV	GATATC	1 cut(s)	228
EcoT14I	CCWWGG	2 cut(s)	323, 366
EcoT22I	ATGCAT	1 cut(s)	454
ErhI	CCWWGG	2 cut(s)	323, 366
FaeI	CATG	2 cut(s)	407, 452
FaiI	YATR	8 cut(s)	174, 206, 268, 270, 405, 450, 460, 462
FatI	CATG	2 cut(s)	403, 448
FbaI	TGATCA	1 cut(s)	276
Fnu4HI	GCNGC	1 cut(s)	408
FokI	GGATG	1 cut(s)	411
Fsp4HI	GCNGC	1 cut(s)	408
FspBI	CTAG	2 cut(s)	324, 393
GluI	GCNGC	1 cut(s)	408
Hin1II	CATG	2 cut(s)	407, 452
HindIII	AAGCTT	2 cut(s)	152, 195
HinfI	GANTC	2 cut(s)	35, 132
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	419
Hpy188I	TCNGA	1 cut(s)	276
Hpy8I	GTNNAC	1 cut(s)	419
HpyAV	CCTTC	1 cut(s)	354
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	2 cut(s)	419, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	1 cut(s)	357
Hsp92II	CATG	2 cut(s)	407, 452
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	2 cut(s)	107, 276
LguI	GCTCTTC	1 cut(s)	59
LmnI	GCTCC	2 cut(s)	97, 305
LpnPI	CCDG	7 cut(s)	22, 34, 56, 90, 294, 361, 399
LweI	GCATC	1 cut(s)	461
MaeI	CTAG	2 cut(s)	324, 393
MaeIII	GTNAC	3 cut(s)	32, 298, 384
MalI	GATC	2 cut(s)	109, 278
MboI	GATC	2 cut(s)	107, 276
MboII	GAAGA	2 cut(s)	46, 179
MfeI	CAATTG	1 cut(s)	294
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	3 cut(s)	294, 379, 423
MlyI	GAGTC	1 cut(s)	29
MnlI	CCTC	4 cut(s)	239, 244, 389, 442
Mph1103I	ATGCAT	1 cut(s)	454
MroXI	GAANNNNTTC	1 cut(s)	174
MseI	TTAA	3 cut(s)	59, 201, 351
MslI	CAYNNNNRTG	1 cut(s)	463
MunI	CAATTG	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	416
NdeII	GATC	2 cut(s)	107, 276
NlaIII	CATG	2 cut(s)	407, 452
NmuCI	GTSAC	2 cut(s)	32, 298
NsiI	ATGCAT	1 cut(s)	454
NspI	RCATGY	2 cut(s)	407, 452
PaeI	GCATGC	1 cut(s)	407
PciSI	GCTCTTC	1 cut(s)	59
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	1 cut(s)	132
PkrI	GCNGC	1 cut(s)	409
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
PshAI	GACNNNNGTC	1 cut(s)	296
RseI	CAYNNNNRTG	1 cut(s)	463
SapI	GCTCTTC	1 cut(s)	59
SaqAI	TTAA	3 cut(s)	59, 201, 351
SatI	GCNGC	1 cut(s)	408
Sau3AI	GATC	2 cut(s)	107, 276
SchI	GAGTC	1 cut(s)	29
SduI	GDGCHC	1 cut(s)	421
SetI	ASST	6 cut(s)	102, 156, 199, 241, 325, 329
SfaNI	GCATC	1 cut(s)	461
SmiMI	CAYNNNNRTG	1 cut(s)	463
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
SphI	GCATGC	1 cut(s)	407
Sse9I	AATT	3 cut(s)	294, 379, 423
SsiI	CCGC	1 cut(s)	407
SspMI	CTAG	2 cut(s)	324, 393
StyI	CCWWGG	2 cut(s)	323, 366
TaaI	ACNGT	1 cut(s)	139
TaqII	GACCGA	1 cut(s)	62
TasI	AATT	3 cut(s)	294, 379, 423
TauI	GCSGC	1 cut(s)	410
TfiI	GAWTC	1 cut(s)	132
Tru1I	TTAA	3 cut(s)	59, 201, 351
Tru9I	TTAA	3 cut(s)	59, 201, 351
TseFI	GTSAC	2 cut(s)	32, 298
Tsp45I	GTSAC	2 cut(s)	32, 298
TspDTI	ATGAA	1 cut(s)	330
VneI	GTGCAC	1 cut(s)	417
XapI	RAATTY	1 cut(s)	423
XceI	RCATGY	2 cut(s)	407, 452
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XmaJI	CCTAGG	1 cut(s)	323
XmnI	GAANNNNTTC	1 cut(s)	174
XspI	CTAG	2 cut(s)	324, 393
Zsp2I	ATGCAT	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.