Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005449

Physical Location & Seq

Genomic Coordinates Forward (+)

52622513 .. 52622848

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0380300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGCAGCAACCACCACCGCCAAGACTTCGGCTTCAACTCCCAAACTCAAGAGCTTCGCCCCAGTCCTCCTGCTCCTCCTCATCCTCGTCTTATCAACCATCTCCGGCAGATCTACTAATCGGATCCGGTTGGTTAAGAATCAGATCCCCAGCTGCTGCGACATGTCGTCGGAAGCGCAGTGCTCCCAAAACCCCAAGTACCGGCGGTGCCGCAGCGAGTCCCTGGACGACATGTGCTTCCCCCAAGTCCGAGGCTCTGCGATTGCCCCCTCAGGCCTTCACTTGCAAATTGATCCGATTCAGCCAAAAATTTTGAGCTACTATGATTGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF866

Protein Analysis

111

Amino Acids

12.18

Weight (kDa)

9.21

Isoelectric Point (pI)

56.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32930 AT4G32930
fragaria_vesca	FvH4_2g32260 FvH4_2g32280
malus_domestica	MD08G1073900.v1.1
prunus_persica	Prupe.1G415500_v2.0.a1
pyrus_communis	pycom15g05830
rosa_chinensis	RchiOBHm_Chr6g0310421 RchiOBHm_Chr6g0310431
rosa_laevigata	RLG00000010483
rosa_multiflora	Rmu_sc0000439.1_g000001 Rmu_sc0009072.1_g000007 Rmu_sc0009072.1_g000008 Rmu_sc0020729.1_g000016 Rmu_sc0020729.1_g000017
rosa_roxburghii	Rroxscaffold_7G00158530
rosa_rugosa	Rorug06G0380100 Rorug06G0380200 Rorug06G0380300
rosa_samantha	Rh6AG494100 Rh6AG494200 Rh6BG503800 Rh6BG504000 Rh6CG509000 Rh6CG509200 Rh6DG495000 Rh6DG495200
rosa_wichuraiana	Rw6G042990 Rw6G043000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	207
AciI	CCGC	3 cut(s)	18, 205, 211
AclWI	GGATC	4 cut(s)	118, 131, 139, 287
AcsI	RAATTY	1 cut(s)	309
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	201
AflIII	ACRYGT	2 cut(s)	162, 231
AgsI	TTSAA	1 cut(s)	36
AhdI	GACNNNNNGTC	1 cut(s)	166
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	3 cut(s)	54, 153, 318
AluI	AGCT	3 cut(s)	54, 153, 318
Alw21I	GWGCWC	1 cut(s)	185
AlwI	GGATC	4 cut(s)	118, 131, 139, 287
AlwNI	CAGNNNCTG	1 cut(s)	156
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	4 cut(s)	5, 153, 156, 213
ApoI	RAATTY	1 cut(s)	309
AspLEI	GCGC	1 cut(s)	178
AxyI	CCTNAGG	1 cut(s)	271
BamHI	GGATCC	1 cut(s)	123
BanI	GGYRCC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	4 cut(s)	17, 140, 143, 225
BccI	CCATC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	224
BglII	AGATCT	1 cut(s)	110
BisI	GCNGC	5 cut(s)	6, 154, 157, 211, 214
BlsI	GCNGC	5 cut(s)	7, 155, 158, 212, 215
Bme1390I	CCNGG	1 cut(s)	224
BmeRI	GACNNNNNGTC	1 cut(s)	166
BmiI	GGNNCC	2 cut(s)	125, 209
BmrFI	CCNGG	1 cut(s)	224
BmrI	ACTGGG	1 cut(s)	56
BmuI	ACTGGG	1 cut(s)	56
BpuEI	CTTGAG	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	222, 250
BsaWI	WCCGGW	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse118I	RCCGGY	1 cut(s)	201
Bse1I	ACTGG	1 cut(s)	62
Bse21I	CCTNAGG	1 cut(s)	271
BseBI	CCWGG	1 cut(s)	224
BseDI	CCNNGG	2 cut(s)	222, 250
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	62
BseRI	GAGGAG	2 cut(s)	65, 68
BseXI	GCAGC	4 cut(s)	17, 140, 143, 225
BseYI	CCCAGC	1 cut(s)	149
BshFI	GGCC	1 cut(s)	276
BshNI	GGYRCC	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	185
BsiSI	CCGG	3 cut(s)	105, 127, 202
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	1 cut(s)	276
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	4 cut(s)	110, 123, 144, 292
BspACI	CCGC	3 cut(s)	18, 205, 211
BspANI	GGCC	1 cut(s)	276
BspCNI	CTCAG	1 cut(s)	284
BspLI	GGNNCC	2 cut(s)	125, 209
BspPI	GGATC	4 cut(s)	118, 131, 139, 287
BspT107I	GGYRCC	1 cut(s)	207
BsrFI	RCCGGY	1 cut(s)	201
BsrI	ACTGG	1 cut(s)	62
BssAI	RCCGGY	1 cut(s)	201
BssECI	CCNNGG	2 cut(s)	222, 250
BssMI	GATC	4 cut(s)	110, 123, 144, 292
Bst2UI	CCWGG	1 cut(s)	224
BstDEI	CTNAG	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	4 cut(s)	113, 126, 147, 295
BstMBI	GATC	4 cut(s)	110, 123, 144, 292
BstNI	CCWGG	1 cut(s)	224
BstNSI	RCATGY	2 cut(s)	166, 235
BstSCI	CCNGG	1 cut(s)	222
BstV1I	GCAGC	4 cut(s)	17, 140, 143, 225
BstX2I	RGATCY	3 cut(s)	110, 123, 144
BstYI	RGATCY	3 cut(s)	110, 123, 144
Bsu36I	CCTNAGG	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	81
BtsI	GCAGTG	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	185
CaiI	CAGNNNCTG	1 cut(s)	156
CfoI	GCGC	1 cut(s)	178
Cfr10I	RCCGGY	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	2 cut(s)	163, 232
CviJI	RGCY	7 cut(s)	32, 54, 153, 255, 276, 304, 318
CviKI_1	RGCY	7 cut(s)	32, 54, 153, 255, 276, 304, 318
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	1 cut(s)	271
DpnI	GATC	4 cut(s)	112, 125, 146, 294
DpnII	GATC	4 cut(s)	110, 123, 144, 292
DriI	GACNNNNNGTC	1 cut(s)	166
Eam1105I	GACNNNNNGTC	1 cut(s)	166
Eco147I	AGGCCT	1 cut(s)	276
Eco81I	CCTNAGG	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	222
FaeI	CATG	2 cut(s)	166, 235
FaiI	YATR	3 cut(s)	164, 233, 324
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	2 cut(s)	162, 231
Fnu4HI	GCNGC	5 cut(s)	6, 154, 157, 211, 214
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	5 cut(s)	6, 154, 157, 211, 214
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	5 cut(s)	6, 154, 157, 211, 214
GsaI	CCCAGC	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	276
HapII	CCGG	3 cut(s)	105, 127, 202
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	2 cut(s)	166, 235
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	3 cut(s)	139, 218, 298
HpaII	CCGG	3 cut(s)	105, 127, 202
Hpy188I	TCNGA	5 cut(s)	123, 144, 172, 251, 297
Hpy188III	TCNNGA	1 cut(s)	49
Hpy99I	CGWCG	1 cut(s)	172
HpyAV	CCTTC	1 cut(s)	287
HpyCH4V	TGCA	2 cut(s)	286, 330
HpyF3I	CTNAG	1 cut(s)	271
Hsp92II	CATG	2 cut(s)	166, 235
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	4 cut(s)	110, 123, 144, 292
LmnI	GCTCC	2 cut(s)	78, 188
LpnPI	CCDG	9 cut(s)	75, 83, 118, 140, 163, 209, 215, 236, 258
Lsp1109I	GCAGC	4 cut(s)	17, 140, 143, 225
MalI	GATC	4 cut(s)	112, 125, 146, 294
MboI	GATC	4 cut(s)	110, 123, 144, 292
MflI	RGATCY	3 cut(s)	110, 123, 144
MhlI	GDGCHC	1 cut(s)	185
MluCI	AATT	2 cut(s)	288, 309
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	6 cut(s)	77, 86, 89, 95, 245, 280
MseI	TTAA	1 cut(s)	135
MspA1I	CMGCKG	1 cut(s)	153
MspI	CCGG	3 cut(s)	105, 127, 202
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
NdeII	GATC	4 cut(s)	110, 123, 144, 292
NlaIII	CATG	2 cut(s)	166, 235
NlaIV	GGNNCC	2 cut(s)	125, 209
NspI	RCATGY	2 cut(s)	166, 235
PceI	AGGCCT	1 cut(s)	276
PciI	ACATGT	2 cut(s)	162, 231
PfeI	GAWTC	2 cut(s)	139, 298
PkrI	GCNGC	5 cut(s)	7, 155, 158, 212, 215
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
PscI	ACATGT	2 cut(s)	162, 231
Psp6I	CCWGG	1 cut(s)	222
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	2 cut(s)	125, 209
PstNI	CAGNNNCTG	1 cut(s)	156
PsuI	RGATCY	3 cut(s)	110, 123, 144
PvuII	CAGCTG	1 cut(s)	153
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	5 cut(s)	6, 154, 157, 211, 214
Sau3AI	GATC	4 cut(s)	110, 123, 144, 292
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	3 cut(s)	56, 155, 320
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	2 cut(s)	288, 309
SseBI	AGGCCT	1 cut(s)	276
SsiI	CCGC	3 cut(s)	18, 205, 211
StuI	AGGCCT	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	222
TasI	AATT	2 cut(s)	288, 309
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	2 cut(s)	139, 298
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TscAI	CASTG	1 cut(s)	185
TseI	GCWGC	4 cut(s)	5, 153, 156, 213
TspRI	CASTG	1 cut(s)	185
XapI	RAATTY	1 cut(s)	309
XceI	RCATGY	2 cut(s)	166, 235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.