Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0005449

Physical Location & Seq

Genomic Coordinates Reverse (-)

36113295 .. 36115723

Gene Structure 2429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G415500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGTGAAATTTTTACTTCAGATCGCTGCGGACCTCGAGAACCTGACGAACCTTCAGCCCCAGGAAGGCTGCAACGACCCCAACTTTTCCTATCTCTTCAAGTTGAAATGTGAGAGGTGTGGAGAGCTGAGCCAGAGGGAAACTTGTGTGAGCTTGAACGAGACTGTTCCTCTTCCATCGGGCAAGGCAACCGTTAATCTCGTTCAGAAGTGCAAGTTTTGTGGAAGGGATGGAACTCTGACAATGATGCCAGGTCATGGTAAACCACTGACCCAGCAAATGTGTGAAGAAAGGAAATTTTCCCCCTTGATGATGTTTGAGTGCAGGGGTTATGAGCCTGTGGACTATGTATTTGCTAGTGGGTGGAAGGTTGAATCTGTGGAAGGGACAAAATTTGACCATGTTGACTTGTCGGGAGGGGACTTTGTTGAATATGATGAGAAGGGAGAGTGCCCAGTTATGGTTTCCAACCTCCGTGCCAGTTTTGTGGTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF866

Protein Analysis

166

Amino Acids

18.54

Weight (kDa)

5.13

Isoelectric Point (pI)

31.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005449)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G32930 AT4G32930
fragaria_vesca	FvH4_2g32260 FvH4_2g32280
malus_domestica	MD08G1073900.v1.1
prunus_persica	Prupe.1G415500_v2.0.a1
pyrus_communis	pycom15g05830
rosa_chinensis	RchiOBHm_Chr6g0310421 RchiOBHm_Chr6g0310431
rosa_laevigata	RLG00000010483
rosa_multiflora	Rmu_sc0000439.1_g000001 Rmu_sc0009072.1_g000007 Rmu_sc0009072.1_g000008 Rmu_sc0020729.1_g000016 Rmu_sc0020729.1_g000017
rosa_roxburghii	Rroxscaffold_7G00158530
rosa_rugosa	Rorug06G0380100 Rorug06G0380200 Rorug06G0380300
rosa_samantha	Rh6AG494100 Rh6AG494200 Rh6BG503800 Rh6BG504000 Rh6CG509000 Rh6CG509200 Rh6DG495000 Rh6DG495200
rosa_wichuraiana	Rw6G042990 Rw6G043000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	257
AciI	CCGC	1 cut(s)	29
AcsI	RAATTY	3 cut(s)	8, 296, 392
AcuI	CTGAAG	1 cut(s)	38
AfiI	CCNNNNNNNGG	3 cut(s)	65, 257, 460
AgsI	TTSAA	5 cut(s)	100, 106, 157, 374, 431
AjnI	CCWGG	2 cut(s)	60, 250
AluBI	AGCT	2 cut(s)	127, 153
AluI	AGCT	2 cut(s)	127, 153
Alw26I	GTCTC	1 cut(s)	155
Ama87I	CYCGRG	1 cut(s)	35
ApeKI	GCWGC	2 cut(s)	26, 69
ApoI	RAATTY	3 cut(s)	8, 296, 392
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	31
BaeGI	GKGCMC	1 cut(s)	455
BbvI	GCAGC	2 cut(s)	13, 56
BccI	CCATC	2 cut(s)	184, 224
BciT130I	CCWGG	2 cut(s)	62, 252
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	1 cut(s)	357
BisI	GCNGC	2 cut(s)	27, 70
BlpI	GCTNAGC	1 cut(s)	128
BlsI	GCNGC	2 cut(s)	28, 71
Bme1390I	CCNGG	2 cut(s)	62, 252
Bme18I	GGWCC	1 cut(s)	31
BmeT110I	CYCGRG	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	31
BmrFI	CCNGG	2 cut(s)	62, 252
BmrI	ACTGGG	1 cut(s)	449
BmsI	GCATC	1 cut(s)	237
BmuI	ACTGGG	1 cut(s)	449
Bpu1102I	GCTNAGC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 257, 460
Bse1I	ACTGG	2 cut(s)	455, 480
BseBI	CCWGG	2 cut(s)	62, 252
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	3 cut(s)	65, 257, 460
BseMII	CTCAG	1 cut(s)	119
BseNI	ACTGG	2 cut(s)	455, 480
BseSI	GKGCMC	1 cut(s)	455
BseXI	GCAGC	2 cut(s)	13, 56
BseYI	CCCAGC	1 cut(s)	273
BsgI	GTGCAG	1 cut(s)	343
BsiHKCI	CYCGRG	1 cut(s)	35
BslFI	GGGAC	2 cut(s)	400, 434
BslI	CCNNNNNNNGG	3 cut(s)	65, 257, 460
BsmAI	GTCTC	1 cut(s)	155
BsmFI	GGGAC	2 cut(s)	400, 434
BsoBI	CYCGRG	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	455
Bsp143I	GATC	1 cut(s)	21
Bsp1720I	GCTNAGC	1 cut(s)	128
BspACI	CCGC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	120
BsrI	ACTGG	2 cut(s)	455, 480
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	1 cut(s)	21
Bst2UI	CCWGG	2 cut(s)	62, 252
Bst4CI	ACNGT	2 cut(s)	166, 193
Bst6I	CTCTTC	2 cut(s)	101, 177
BstDEI	CTNAG	1 cut(s)	128
BstF5I	GGATG	1 cut(s)	235
BstKTI	GATC	1 cut(s)	24
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	21
BstNI	CCWGG	2 cut(s)	62, 252
BstSCI	CCNGG	2 cut(s)	60, 250
BstSLI	GKGCMC	1 cut(s)	455
BstV1I	GCAGC	2 cut(s)	13, 56
BstXI	CCANNNNNNTGG	1 cut(s)	487
BtsCI	GGATG	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	31
CspCI	CAANNNNNGTGG	2 cut(s)	202, 237
CviAII	CATG	2 cut(s)	257, 401
CviJI	RGCY	6 cut(s)	58, 69, 127, 132, 153, 337
CviKI_1	RGCY	6 cut(s)	58, 69, 127, 132, 153, 337
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
Eam1104I	CTCTTC	2 cut(s)	101, 177
EarI	CTCTTC	2 cut(s)	101, 177
Eco47I	GGWCC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	38
Eco88I	CYCGRG	1 cut(s)	35
EcoRII	CCWGG	2 cut(s)	60, 250
FaeI	CATG	2 cut(s)	260, 404
FaiI	YATR	6 cut(s)	258, 333, 348, 402, 435, 461
FaqI	GGGAC	2 cut(s)	400, 434
FatI	CATG	2 cut(s)	256, 400
Fnu4HI	GCNGC	2 cut(s)	27, 70
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	2 cut(s)	27, 70
FspBI	CTAG	1 cut(s)	357
GluI	GCNGC	2 cut(s)	27, 70
GsaI	CCCAGC	1 cut(s)	277
Hin1II	CATG	2 cut(s)	260, 404
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	1 cut(s)	374
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	3 cut(s)	263, 343, 406
Hpy188I	TCNGA	3 cut(s)	21, 207, 240
Hpy188III	TCNNGA	2 cut(s)	37, 414
Hpy8I	GTNNAC	3 cut(s)	263, 343, 406
HpyAV	CCTTC	6 cut(s)	59, 62, 219, 361, 377, 436
HpyCH4III	ACNGT	2 cut(s)	166, 193
HpyCH4V	TGCA	3 cut(s)	72, 213, 324
HpyF3I	CTNAG	1 cut(s)	128
Hsp92II	CATG	2 cut(s)	260, 404
Kzo9I	GATC	1 cut(s)	21
Lsp1109I	GCAGC	2 cut(s)	13, 56
LweI	GCATC	1 cut(s)	237
MaeI	CTAG	1 cut(s)	357
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	3 cut(s)	88, 164, 299
MhlI	GDGCHC	1 cut(s)	455
MluCI	AATT	3 cut(s)	8, 296, 392
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	6 cut(s)	44, 108, 129, 180, 410, 482
MseI	TTAA	1 cut(s)	195
MspR9I	CCNGG	2 cut(s)	62, 252
MvaI	CCWGG	2 cut(s)	62, 252
NdeII	GATC	1 cut(s)	21
NlaIII	CATG	2 cut(s)	260, 404
PaeR7I	CTCGAG	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	374
PflMI	CCANNNNNTGG	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	28, 71
Psp6I	CCWGG	2 cut(s)	60, 250
PspFI	CCCAGC	1 cut(s)	273
PspGI	CCWGG	2 cut(s)	60, 250
PspPI	GGNCC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	2 cut(s)	27, 70
Sau3AI	GATC	1 cut(s)	21
Sau96I	GGNCC	1 cut(s)	31
ScrFI	CCNGG	2 cut(s)	62, 252
SduI	GDGCHC	1 cut(s)	455
SetI	ASST	9 cut(s)	36, 45, 54, 119, 129, 155, 256, 372, 474
SfaNI	GCATC	1 cut(s)	237
Sfr274I	CTCGAG	1 cut(s)	35
SinI	GGWCC	1 cut(s)	31
SlaI	CTCGAG	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	3 cut(s)	8, 296, 392
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	1 cut(s)	357
StyD4I	CCNGG	2 cut(s)	60, 250
TaaI	ACNGT	2 cut(s)	166, 193
TaqI	TCGA	1 cut(s)	36
TasI	AATT	3 cut(s)	8, 296, 392
TfiI	GAWTC	1 cut(s)	374
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	1 cut(s)	273
TseI	GCWGC	2 cut(s)	26, 69
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	1 cut(s)	273
Van91I	CCANNNNNTGG	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	31
XapI	RAATTY	3 cut(s)	8, 296, 392
XhoI	CTCGAG	1 cut(s)	35
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.