Rmu_sc0020729.1_g000017

UPF0587 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020729.1
OG0005449
Physical Location & Seq
Forward (+)
62297 .. 63154
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020729.1_g000017.1.cds

Sequence Viewer

Length: 399 bp
atggtgctcttcgcgctacagataacggccgagctcgaaaacctcactaatcttcagccccggggaggctgcgatgatccagaatttacctatctcttcaagttgaaatgtcagagctgtggtgagccgactcagaaggaaactgctttgagcttgagcgagtctgtccctcttccggtgggcaagggaaccactaatctcattcagaagtgcaagttttgtggcagggaaggaaccgtaacaatgatgcctggtcgtggtcaaccattgactgaggagttaagtgaagcagggaagtttgcccccttgatggtgtttgaatgcaggggttatgagcctgcggattatgtctttggtggcgggtggaaagttcaatctgtaagtttctccttcttaaca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF866

Protein Analysis

133

Amino Acids

14.57

Weight (kDa)

4.99

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 14
AciI CCGC 2 cut(s) 341, 360
AclWI GGATC 1 cut(s) 71
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 1 cut(s) 83
AcuI CTGAAG 1 cut(s) 38
AfiI CCNNNNNNNGG 4 cut(s) 65, 175, 257, 310
AgsI TTSAA 4 cut(s) 100, 106, 320, 374
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 3 cut(s) 34, 117, 153
AluI AGCT 3 cut(s) 34, 117, 153
Alw21I GWGCWC 2 cut(s) 9, 36
AlwI GGATC 1 cut(s) 71
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 1 cut(s) 69
ApoI RAATTY 1 cut(s) 83
AspLEI GCGC 1 cut(s) 16
AsuC2I CCSGG 2 cut(s) 61, 62
AsuHPI GGTGA 1 cut(s) 134
AvaI CYCGRG 1 cut(s) 60
BanII GRGCYC 1 cut(s) 36
Bbv12I GWGCWC 2 cut(s) 9, 36
BbvI GCAGC 1 cut(s) 56
BccI CCATC 1 cut(s) 304
BceAI ACGGC 1 cut(s) 42
BciT130I CCWGG 1 cut(s) 252
BcnI CCSGG 2 cut(s) 61, 62
BfmI CTRYAG 1 cut(s) 17
BisI GCNGC 1 cut(s) 70
BlsI GCNGC 1 cut(s) 71
Bme1390I CCNGG 3 cut(s) 61, 62, 252
BmeT110I CYCGRG 1 cut(s) 60
BmiI GGNNCC 2 cut(s) 190, 235
BmrFI CCNGG 3 cut(s) 61, 62, 252
BmsI GCATC 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 175
BpuMI CCSGG 2 cut(s) 61, 62
BsaJI CCNNGG 3 cut(s) 59, 60, 61
BsaWI WCCGGW 1 cut(s) 175
Bsc4I CCNNNNNNNGG 4 cut(s) 65, 175, 257, 310
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 3 cut(s) 59, 60, 61
BseLI CCNNNNNNNGG 4 cut(s) 65, 175, 257, 310
BseMII CTCAG 2 cut(s) 146, 264
BseRI GAGGAG 1 cut(s) 290
BseX3I CGGCCG 1 cut(s) 27
BseXI GCAGC 1 cut(s) 56
Bsh1236I CGCG 1 cut(s) 14
Bsh1285I CGRYCG 1 cut(s) 30
BshFI GGCC 1 cut(s) 29
BsiEI CGRYCG 1 cut(s) 30
BsiHKAI GWGCWC 2 cut(s) 9, 36
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 2 cut(s) 61, 176
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 4 cut(s) 65, 175, 257, 310
BsmFI GGGAC 1 cut(s) 152
BsmI GAATGC 1 cut(s) 326
BsnI GGCC 1 cut(s) 29
BsoBI CYCGRG 1 cut(s) 60
Bsp1286I GDGCHC 2 cut(s) 9, 36
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 2 cut(s) 341, 360
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 2 cut(s) 145, 265
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 2 cut(s) 190, 235
BspPI GGATC 1 cut(s) 71
BspQI GCTCTTC 1 cut(s) 14
BssECI CCNNGG 3 cut(s) 59, 60, 61
BssMI GATC 1 cut(s) 76
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 238
Bst6I CTCTTC 3 cut(s) 14, 101, 177
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 2 cut(s) 132, 273
BstFNI CGCG 1 cut(s) 14
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstMCI CGRYCG 1 cut(s) 30
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 3 cut(s) 59, 60, 250
BstSFI CTRYAG 1 cut(s) 17
BstUI CGCG 1 cut(s) 14
BstV1I GCAGC 1 cut(s) 56
BstZI CGGCCG 1 cut(s) 27
BsuRI GGCC 1 cut(s) 29
BtgZI GCGATG 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 339
CfoI GCGC 1 cut(s) 16
Cfr9I CCCGGG 1 cut(s) 60
CspCI CAANNNNNGTGG 2 cut(s) 202, 237
CviJI RGCY 8 cut(s) 29, 34, 58, 69, 117, 127, 153, 337
CviKI_1 RGCY 8 cut(s) 29, 34, 58, 69, 117, 127, 153, 337
DdeI CTNAG 2 cut(s) 132, 273
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
EaeI YGGCCR 1 cut(s) 27
EagI CGGCCG 1 cut(s) 27
Eam1104I CTCTTC 3 cut(s) 14, 101, 177
EarI CTCTTC 3 cut(s) 14, 101, 177
Ecl136II GAGCTC 1 cut(s) 34
EclXI CGGCCG 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 36
Eco52I CGGCCG 1 cut(s) 27
Eco53kI GAGCTC 1 cut(s) 34
Eco57I CTGAAG 1 cut(s) 38
Eco88I CYCGRG 1 cut(s) 60
EcoICRI GAGCTC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 250
EcoT38I GRGCYC 1 cut(s) 36
FaiI YATR 2 cut(s) 333, 348
FaqI GGGAC 1 cut(s) 152
FauI CCCGC 1 cut(s) 353
Fnu4HI GCNGC 1 cut(s) 70
FriOI GRGCYC 1 cut(s) 36
Fsp4HI GCNGC 1 cut(s) 70
GlaI GCGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 70
HaeIII GGCC 1 cut(s) 29
HapII CCGG 2 cut(s) 61, 176
HhaI GCGC 1 cut(s) 16
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HincII GTYRAC 1 cut(s) 263
HindII GTYRAC 1 cut(s) 263
HinfI GANTC 2 cut(s) 130, 161
HpaII CCGG 2 cut(s) 61, 176
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 3 cut(s) 114, 135, 207
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 1 cut(s) 263
HpyAV CCTTC 2 cut(s) 130, 224
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4V TGCA 2 cut(s) 213, 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 2 cut(s) 132, 273
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 1 cut(s) 76
LguI GCTCTTC 1 cut(s) 14
LpnPI CCDG 9 cut(s) 74, 93, 189, 211, 237, 264, 276, 310, 351
Lsp1109I GCAGC 1 cut(s) 56
LweI GCATC 1 cut(s) 237
MaeIII GTNAC 1 cut(s) 238
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 3 cut(s) 44, 88, 164
MhlI GDGCHC 2 cut(s) 9, 36
MluCI AATT 1 cut(s) 83
MlyI GAGTC 2 cut(s) 124, 170
MnlI CCTC 4 cut(s) 53, 59, 180, 268
MseI TTAA 2 cut(s) 281, 395
MspI CCGG 2 cut(s) 61, 176
MspR9I CCNGG 3 cut(s) 61, 62, 252
Mva1269I GAATGC 1 cut(s) 326
MvaI CCWGG 1 cut(s) 252
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 13
NciI CCSGG 2 cut(s) 61, 62
NdeII GATC 1 cut(s) 76
NlaIV GGNNCC 2 cut(s) 190, 235
NmeAIII GCCGAG 1 cut(s) 55
PciSI GCTCTTC 1 cut(s) 14
PctI GAATGC 1 cut(s) 326
PkrI GCNGC 1 cut(s) 71
PleI GAGTC 2 cut(s) 124, 169
PpsI GAGTC 2 cut(s) 124, 169
Psp124BI GAGCTC 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 2 cut(s) 190, 235
SacI GAGCTC 1 cut(s) 36
SapI GCTCTTC 1 cut(s) 14
SaqAI TTAA 2 cut(s) 281, 395
SatI GCNGC 1 cut(s) 70
Sau3AI GATC 1 cut(s) 76
SchI GAGTC 2 cut(s) 124, 170
ScrFI CCNGG 3 cut(s) 61, 62, 252
SduI GDGCHC 2 cut(s) 9, 36
SetI ASST 5 cut(s) 36, 45, 92, 119, 155
SfaNI GCATC 1 cut(s) 237
SfcI CTRYAG 1 cut(s) 17
SmaI CCCGGG 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
Sse9I AATT 1 cut(s) 83
SsiI CCGC 2 cut(s) 341, 360
SstI GAGCTC 1 cut(s) 36
StyD4I CCNGG 3 cut(s) 59, 60, 250
TaaI ACNGT 1 cut(s) 238
TaqI TCGA 1 cut(s) 36
TasI AATT 1 cut(s) 83
Tru1I TTAA 2 cut(s) 281, 395
Tru9I TTAA 2 cut(s) 281, 395
TseI GCWGC 1 cut(s) 69
TspMI CCCGGG 1 cut(s) 60
XapI RAATTY 1 cut(s) 83
XmaI CCCGGG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.