Rorug06G0380100

UPF0587 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005449
Physical Location & Seq
Reverse (-)
52608717 .. 52609707
991 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0380100.1

Sequence Viewer

Length: 429 bp
ATGGGGGATGAAGGGTTAGGTTGTTTTGGGTTTTCAGTTTTGATGATTAGGGTGAGGACTTTCGATTTGGCAAGAAATTTGGAATCAGTTGGAGGTGTAAGAATACCACCTCCTCCGGATCAGTTGGTCAAGCAATTGAACCTAGACAACATTATTTTGGAAAGTGATTCACAAGAGCTAATTTCAGATTTGGGAAATCACATAGAGAAAGGTAATTGGAGAATCTACCCTTTTCTCATTGAGTTTCATCACATCCATCATCTTCTTAGCAATGTCTCTTGGAATTGGATCTCCCATGAAGCTAACCGTGCTGCCAATGCAGCCGCAAAGCTAGCCAAATCGAGGTTGTGCACAGAAGTGTGGGTTAATATACCCCCAACCTCTCTTGTCTCTGTTTTAACTAGTGATGGGCTTCCTTGTCCTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF866

Protein Analysis

142

Amino Acids

15.84

Weight (kDa)

5.92

Isoelectric Point (pI)

52.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 41 - 112 5.8e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 115
AciI CCGC 1 cut(s) 324
AclWI GGATC 2 cut(s) 126, 296
AcsI RAATTY 1 cut(s) 76
AfiI CCNNNNNNNGG 1 cut(s) 342
AgsI TTSAA 1 cut(s) 139
AhlI ACTAGT 1 cut(s) 401
AleI CACNNNNGTG 1 cut(s) 356
AluBI AGCT 3 cut(s) 178, 302, 331
AluI AGCT 3 cut(s) 178, 302, 331
Alw21I GWGCWC 1 cut(s) 353
Alw26I GTCTC 2 cut(s) 280, 394
Alw44I GTGCAC 1 cut(s) 349
AlwI GGATC 2 cut(s) 126, 296
Aor13HI TCCGGA 1 cut(s) 115
ApaLI GTGCAC 1 cut(s) 349
ApeKI GCWGC 2 cut(s) 311, 320
ApoI RAATTY 1 cut(s) 76
ArsI GACNNNNNNTTYG 2 cut(s) 49, 81
AsuHPI GGTGA 1 cut(s) 64
AsuNHI GCTAGC 1 cut(s) 331
BaeGI GKGCMC 1 cut(s) 353
Bbv12I GWGCWC 1 cut(s) 353
BbvI GCAGC 2 cut(s) 298, 332
BccI CCATC 2 cut(s) 264, 401
BcoDI GTCTC 2 cut(s) 280, 394
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 3 cut(s) 143, 332, 402
BisI GCNGC 3 cut(s) 312, 321, 324
BlsI GCNGC 3 cut(s) 313, 322, 325
BmtI GCTAGC 1 cut(s) 335
BsaWI WCCGGW 1 cut(s) 115
Bsc4I CCNNNNNNNGG 1 cut(s) 342
Bse3DI GCAATG 1 cut(s) 277
BseAI TCCGGA 1 cut(s) 115
BseGI GGATG 2 cut(s) 13, 252
BseLI CCNNNNNNNGG 1 cut(s) 342
BseMI GCAATG 1 cut(s) 277
BseRI GAGGAG 1 cut(s) 102
BseSI GKGCMC 1 cut(s) 353
BseXI GCAGC 2 cut(s) 298, 332
BsiHKAI GWGCWC 1 cut(s) 353
BsiSI CCGG 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 342
BsmAI GTCTC 2 cut(s) 280, 394
Bsp1286I GDGCHC 1 cut(s) 353
Bsp13I TCCGGA 1 cut(s) 115
Bsp143I GATC 2 cut(s) 118, 288
BspACI CCGC 1 cut(s) 324
BspEI TCCGGA 1 cut(s) 115
BspOI GCTAGC 1 cut(s) 335
BspPI GGATC 2 cut(s) 126, 296
BsrDI GCAATG 1 cut(s) 277
BssMI GATC 2 cut(s) 118, 288
Bst4CI ACNGT 1 cut(s) 308
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 1 cut(s) 266
BstF5I GGATG 2 cut(s) 13, 252
BstKTI GATC 2 cut(s) 121, 291
BstMAI GTCTC 2 cut(s) 280, 394
BstMBI GATC 2 cut(s) 118, 288
BstMWI GCNNNNNNNGC 4 cut(s) 308, 317, 320, 332
BstSLI GKGCMC 1 cut(s) 353
BstV1I GCAGC 2 cut(s) 298, 332
BstX2I RGATCY 1 cut(s) 288
BstYI RGATCY 1 cut(s) 288
BtsCI GGATG 2 cut(s) 13, 252
Cac8I GCNNGC 1 cut(s) 333
CviAII CATG 1 cut(s) 296
CviJI RGCY 6 cut(s) 178, 302, 323, 331, 335, 412
CviKI_1 RGCY 6 cut(s) 178, 302, 323, 331, 335, 412
DdeI CTNAG 1 cut(s) 266
DpnI GATC 2 cut(s) 120, 290
DpnII GATC 2 cut(s) 118, 288
FaeI CATG 1 cut(s) 299
FaiI YATR 3 cut(s) 203, 297, 371
FatI CATG 1 cut(s) 295
Fnu4HI GCNGC 3 cut(s) 312, 321, 324
FokI GGATG 2 cut(s) 20, 239
Fsp4HI GCNGC 3 cut(s) 312, 321, 324
FspBI CTAG 3 cut(s) 143, 332, 402
GluI GCNGC 3 cut(s) 312, 321, 324
HapII CCGG 1 cut(s) 116
Hin1II CATG 1 cut(s) 299
HinfI GANTC 3 cut(s) 83, 167, 222
HpaII CCGG 1 cut(s) 116
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 351
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 1 cut(s) 351
HpyAV CCTTC 1 cut(s) 5
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4V TGCA 2 cut(s) 320, 351
HpyF10VI GCNNNNNNNGC 4 cut(s) 308, 317, 320, 332
HpyF3I CTNAG 1 cut(s) 266
Hsp92II CATG 1 cut(s) 299
Kpn2I TCCGGA 1 cut(s) 115
Kzo9I GATC 2 cut(s) 118, 288
LpnPI CCDG 1 cut(s) 129
Lsp1109I GCAGC 2 cut(s) 298, 332
MaeI CTAG 3 cut(s) 143, 332, 402
MalI GATC 2 cut(s) 120, 290
MboI GATC 2 cut(s) 118, 288
MboII GAAGA 1 cut(s) 254
MfeI CAATTG 1 cut(s) 134
MflI RGATCY 1 cut(s) 288
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 5 cut(s) 76, 134, 180, 214, 283
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 6 cut(s) 48, 86, 120, 123, 336, 391
MroI TCCGGA 1 cut(s) 115
MseI TTAA 2 cut(s) 366, 398
MslI CAYNNNNRTG 1 cut(s) 356
MspI CCGG 1 cut(s) 116
MunI CAATTG 1 cut(s) 134
MwoI GCNNNNNNNGC 4 cut(s) 308, 317, 320, 332
NdeII GATC 2 cut(s) 118, 288
NheI GCTAGC 1 cut(s) 331
NlaIII CATG 1 cut(s) 299
OliI CACNNNNGTG 1 cut(s) 356
PfeI GAWTC 3 cut(s) 83, 167, 222
PkrI GCNGC 3 cut(s) 313, 322, 325
PsuI RGATCY 1 cut(s) 288
RseI CAYNNNNRTG 1 cut(s) 356
SaqAI TTAA 2 cut(s) 366, 398
SatI GCNGC 3 cut(s) 312, 321, 324
Sau3AI GATC 2 cut(s) 118, 288
SduI GDGCHC 1 cut(s) 353
SmiMI CAYNNNNRTG 1 cut(s) 356
SpeI ACTAGT 1 cut(s) 401
Sse9I AATT 5 cut(s) 76, 134, 180, 214, 283
SsiI CCGC 1 cut(s) 324
SspMI CTAG 3 cut(s) 143, 332, 402
TaaI ACNGT 1 cut(s) 308
TaqI TCGA 2 cut(s) 63, 341
TasI AATT 5 cut(s) 76, 134, 180, 214, 283
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 3 cut(s) 83, 167, 222
Tru1I TTAA 2 cut(s) 366, 398
Tru9I TTAA 2 cut(s) 366, 398
TseI GCWGC 2 cut(s) 311, 320
TspDTI ATGAA 3 cut(s) 24, 236, 312
VneI GTGCAC 1 cut(s) 349
XapI RAATTY 1 cut(s) 76
XspI CTAG 3 cut(s) 143, 332, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.